Wall clock time and date at job start Wed Apr 1 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35675 * 116.99617 * 2 1 4 4 C 1.38919 * 119.68194 * 180.02562 * 3 2 1 5 5 C 1.38374 * 119.11327 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.75868 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47188 * 89.99968 * 6 5 4 8 8 O 1.21276 * 119.99496 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99783 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99889 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46345 * 325.03065 * 10 9 7 12 12 C 1.53043 * 109.46151 * 85.00320 * 10 9 7 13 13 C 1.53193 * 109.31631 * 181.37397 * 12 10 9 14 14 N 1.46922 * 108.77392 * 305.36337 * 13 12 10 15 15 C 1.36936 * 120.63062 * 233.58842 * 14 13 12 16 16 H 1.08003 * 119.99873 * 152.06407 * 15 14 13 17 17 C 1.38809 * 119.99934 * 332.05661 * 15 14 13 18 18 N 1.31614 * 120.00117 * 335.34582 * 17 15 14 19 19 Si 1.86802 * 120.00012 * 155.34144 * 17 15 14 20 20 H 1.48498 * 109.47091 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46992 * 300.00362 * 19 17 15 22 22 H 1.48502 * 109.47080 * 60.00224 * 19 17 15 23 23 C 1.46928 * 118.74048 * 53.85863 * 14 13 12 24 24 C 1.53044 * 109.45260 * 205.06377 * 10 9 7 25 25 C 1.53005 * 109.49622 * 298.57514 * 24 10 9 26 26 C 1.52999 * 109.49327 * 58.66808 * 24 10 9 27 27 C 1.38834 * 118.48469 * 0.27357 * 5 4 3 28 28 C 1.38043 * 119.28513 * 359.45253 * 27 5 4 29 29 N 1.31962 * 120.83605 * 0.56506 * 28 27 5 30 30 H 1.08995 * 109.47532 * 300.00222 * 1 2 3 31 31 H 1.09007 * 109.47230 * 60.00290 * 1 2 3 32 32 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.44642 * 359.95302 * 4 3 2 34 34 H 1.08995 * 109.47059 * 329.99687 * 6 5 4 35 35 H 1.09007 * 109.47135 * 210.00211 * 6 5 4 36 36 H 0.97000 * 120.00154 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.49630 * 61.41267 * 12 10 9 38 38 H 1.09005 * 109.52220 * 301.34361 * 12 10 9 39 39 H 1.08995 * 109.58272 * 185.57539 * 13 12 10 40 40 H 1.09001 * 109.58567 * 65.15119 * 13 12 10 41 41 H 0.97010 * 120.00165 * 354.24304 * 18 17 15 42 42 H 1.09002 * 109.58347 * 65.92560 * 23 14 13 43 43 H 1.08999 * 109.58910 * 186.35017 * 23 14 13 44 44 H 1.09003 * 109.47019 * 59.99509 * 25 24 10 45 45 H 1.08996 * 109.46994 * 180.02562 * 25 24 10 46 46 H 1.09001 * 109.46918 * 299.99901 * 25 24 10 47 47 H 1.09002 * 109.46798 * 60.00793 * 26 24 10 48 48 H 1.09006 * 109.46687 * 180.02562 * 26 24 10 49 49 H 1.08995 * 109.47509 * 300.00030 * 26 24 10 50 50 H 1.08000 * 120.35394 * 179.70171 * 27 5 4 51 51 H 1.08009 * 119.57854 * 180.27338 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5131 -0.0011 6 6 5.5512 2.6270 -0.0022 7 6 6.0510 2.6648 -1.4235 8 8 5.2643 2.6057 -2.3446 9 7 7.3720 2.7654 -1.6707 10 6 7.8580 2.8016 -3.0522 11 1 7.2313 2.1628 -3.6745 12 6 7.7996 4.2386 -3.5757 13 6 8.2760 4.2673 -5.0314 14 7 9.6081 3.6518 -5.1053 15 6 10.6544 4.3202 -5.6829 16 1 11.6663 4.1179 -5.3642 17 6 10.4145 5.2577 -6.6781 18 7 9.3191 5.1814 -7.4038 19 14 11.6462 6.6276 -6.9873 20 1 11.1599 7.4900 -8.0941 21 1 11.7992 7.4430 -5.7557 22 1 12.9584 6.0392 -7.3576 23 6 9.7948 2.3032 -4.5530 24 6 9.3027 2.2987 -3.0977 25 6 10.1894 3.2153 -2.2523 26 6 9.3649 0.8739 -2.5436 27 6 3.2504 3.6492 0.0048 28 6 1.8770 3.5097 -0.0006 29 7 1.3186 2.3140 0.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0229 0.3696 -0.0002 34 1 5.9811 1.7670 0.5113 35 1 5.8467 3.5419 0.5114 36 1 8.0011 2.8130 -0.9339 37 1 8.4454 4.8733 -2.9689 38 1 6.7744 4.6048 -3.5211 39 1 8.3306 5.2993 -5.3777 40 1 7.5794 3.7068 -5.6550 41 1 8.7209 4.4247 -7.3010 42 1 9.2195 1.5858 -5.1383 43 1 10.8518 2.0389 -4.5836 44 1 9.8361 3.2124 -1.2212 45 1 11.2182 2.8570 -2.2854 46 1 10.1454 4.2297 -2.6487 47 1 8.7342 0.2214 -3.1474 48 1 10.3942 0.5163 -2.5758 49 1 9.0111 0.8691 -1.5127 50 1 3.6993 4.6315 0.0094 51 1 1.2517 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941031874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:28 Heat of formation + Delta-G solvation = -46.321999 kcal Electronic energy + Delta-G solvation = -31222.390699 eV Core-core repulsion = 27121.535246 eV Total energy + Delta-G solvation = -4100.855453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.80362 -41.25796 -39.75319 -38.79251 -36.62003 -34.81298 -34.55770 -33.19977 -31.81466 -31.65192 -29.67105 -28.17601 -28.04792 -27.31059 -26.63075 -24.50689 -24.21465 -22.97155 -22.40569 -21.36535 -19.76402 -19.44514 -18.83627 -18.13293 -18.03402 -17.16669 -16.97676 -16.86159 -16.31049 -16.09591 -15.93033 -15.51577 -15.45922 -15.33793 -15.25238 -15.05542 -14.78824 -14.41382 -14.17277 -13.94360 -13.75681 -13.57447 -13.25818 -12.90849 -12.89881 -12.74393 -12.67379 -12.54417 -12.49358 -12.41686 -12.29951 -12.18010 -11.92937 -11.77273 -11.59834 -11.42294 -11.21707 -11.07361 -10.69413 -10.54051 -10.44304 -10.00341 -9.50134 -8.92776 -8.23187 -5.39130 0.15478 0.23323 1.58755 1.66244 1.66957 1.84670 2.08196 2.23505 2.66854 2.81215 3.22926 3.33576 3.50428 3.56398 3.63991 3.88010 3.94283 3.98455 4.03481 4.14074 4.18050 4.27561 4.34289 4.39746 4.42208 4.51524 4.52776 4.56881 4.57987 4.72403 4.74960 4.76276 4.79177 4.86816 4.90723 4.93407 4.96279 5.05986 5.14399 5.15577 5.22923 5.30118 5.30738 5.38417 5.46015 5.53999 5.65823 5.86161 6.22659 6.38098 6.61196 6.83770 7.04554 7.31836 7.78008 8.23661 9.01619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.002291 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.820650 B =12219.050810 C =12760.414446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.296 3.704 4 C -0.190 4.190 5 C 0.006 3.994 6 C -0.094 4.094 7 C 0.512 3.488 8 O -0.585 6.585 9 N -0.705 5.705 10 C 0.178 3.822 11 H 0.048 0.952 12 C -0.128 4.128 13 C 0.162 3.838 14 N -0.608 5.608 15 C -0.344 4.344 16 H 0.057 0.943 17 C -0.081 4.081 18 N -0.948 5.948 19 Si 1.114 2.886 20 H -0.297 1.297 21 H -0.277 1.277 22 H -0.275 1.275 23 C 0.154 3.846 24 C -0.077 4.077 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.199 4.199 28 C 0.128 3.872 29 N -0.560 5.560 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.046 0.954 40 H -0.011 1.011 41 H 0.251 0.749 42 H 0.002 0.998 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.158 0.842 51 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 -7.200 23.951 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.002 4.002 6 C -0.133 4.133 7 C 0.299 3.701 8 O -0.464 6.464 9 N -0.357 5.357 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.168 4.168 13 C 0.035 3.965 14 N -0.332 5.332 15 C -0.474 4.474 16 H 0.075 0.925 17 C -0.277 4.277 18 N -0.590 5.590 19 Si 0.939 3.061 20 H -0.224 1.224 21 H -0.203 1.203 22 H -0.200 1.200 23 C 0.028 3.972 24 C -0.079 4.079 25 C -0.182 4.182 26 C -0.188 4.188 27 C -0.219 4.219 28 C -0.027 4.027 29 N -0.284 5.284 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.007 0.993 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.176 0.824 51 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.986 -6.245 22.426 25.331 hybrid contribution 0.200 -1.249 0.095 1.269 sum -9.786 -7.495 22.521 25.674 Atomic orbital electron populations 1.23021 0.75976 1.04532 1.02092 1.86204 1.24320 1.24687 1.88054 1.20037 0.89911 0.85025 0.93223 1.21085 0.91983 0.99826 1.08167 1.19757 0.95887 0.92113 0.92474 1.20791 0.90359 1.09131 0.93057 1.21043 0.82099 0.75051 0.91887 1.90759 1.56317 1.51077 1.48279 1.45977 1.07254 1.74078 1.08425 1.20487 0.94383 0.95107 0.82728 0.93326 1.22261 0.99615 0.97668 0.97235 1.20673 0.85557 0.96671 0.93578 1.44296 1.06723 1.13803 1.68377 1.20197 0.88490 1.22308 1.16380 0.92484 1.27217 1.02782 1.05305 0.92403 1.70908 1.16193 1.33453 1.38441 0.82868 0.73321 0.73907 0.76017 1.22380 1.20263 1.20034 1.21197 0.98611 0.85472 0.91882 1.21238 0.93143 0.97074 0.96420 1.21719 0.98824 0.99050 0.98632 1.21761 1.02312 0.93352 1.01359 1.22183 0.94826 1.00261 1.04631 1.22857 0.93584 0.93849 0.92418 1.67292 1.41602 0.99438 1.20088 0.92142 0.93149 0.86035 0.83533 0.84059 0.83716 0.74569 0.90883 0.93435 0.93533 0.99343 0.93928 0.97989 0.92233 0.90420 0.92565 0.93805 0.93946 0.91429 0.90186 0.82428 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.83 16 2 O -0.33 -7.72 10.48 -89.92 -0.94 -8.66 16 3 C 0.30 7.46 7.49 84.79 0.63 8.09 16 4 C -0.19 -4.27 9.75 22.47 0.22 -4.05 16 5 C 0.01 0.11 4.41 -19.69 -0.09 0.03 16 6 C -0.09 -1.27 5.88 29.10 0.17 -1.10 16 7 C 0.51 12.22 7.79 87.66 0.68 12.90 16 8 O -0.58 -20.88 15.70 -3.02 -0.05 -20.93 16 9 N -0.70 -15.47 4.29 -442.41 -1.90 -17.36 16 10 C 0.18 5.67 1.57 45.02 0.07 5.74 16 11 H 0.05 1.89 7.58 -2.39 -0.02 1.87 16 12 C -0.13 -4.89 5.31 30.67 0.16 -4.72 16 13 C 0.16 7.97 4.68 86.36 0.40 8.37 16 14 N -0.61 -30.03 2.28 -698.26 -1.59 -31.62 16 15 C -0.34 -18.82 9.49 84.03 0.80 -18.03 16 16 H 0.06 3.07 7.94 -2.91 -0.02 3.04 16 17 C -0.08 -4.64 4.69 84.86 0.40 -4.24 16 18 N -0.95 -59.08 12.41 21.65 0.27 -58.81 16 19 Si 1.11 50.74 29.99 68.60 2.06 52.79 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 C 0.15 6.24 5.24 86.51 0.45 6.69 16 24 C -0.08 -2.26 0.56 -51.96 -0.03 -2.29 16 25 C -0.13 -3.29 7.84 71.98 0.56 -2.73 16 26 C -0.13 -2.91 8.31 71.98 0.60 -2.32 16 27 C -0.20 -3.71 9.81 22.37 0.22 -3.49 16 28 C 0.13 2.54 11.17 84.63 0.95 3.48 16 29 N -0.56 -13.64 9.22 -308.96 -2.85 -16.48 16 30 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.14 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.15 1.00 8.10 -2.38 -0.02 0.98 16 36 H 0.42 5.90 6.66 -92.71 -0.62 5.28 16 37 H 0.07 2.67 6.34 -2.39 -0.02 2.65 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 2.59 6.31 -2.39 -0.02 2.58 16 40 H -0.01 -0.61 7.86 -2.39 -0.02 -0.63 16 41 H 0.25 16.15 6.69 -92.70 -0.62 15.53 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 44 H 0.08 1.38 6.58 -2.39 -0.02 1.37 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.04 1.46 5.97 -2.39 -0.01 1.44 16 47 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 50 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 51 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -79.91 402.68 2.85 -77.06 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.46 Total: 19.83 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 7.38 Total: 4.18 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -6.07 Total: -124.28 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.99 Total: -29.59 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.06 Total: 52.79 kcal Total: -79.91 2.85 -77.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941031874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.743 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds