Wall clock time and date at job start Wed Apr 1 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34260 * 126.52168 * 2 1 4 4 C 1.34057 * 108.22608 * 180.22924 * 3 2 1 5 5 C 1.50696 * 125.38041 * 179.73347 * 4 3 2 6 6 C 1.53004 * 117.49890 * 8.65839 * 5 4 3 7 7 C 1.53004 * 60.00037 * 252.51432 * 6 5 4 8 8 N 1.29937 * 109.23960 * 359.76500 * 4 3 2 9 9 C 1.36066 * 108.47950 * 0.02562 * 8 4 3 10 10 C 1.47420 * 126.44870 * 179.97438 * 9 8 4 11 11 O 1.21613 * 120.00027 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00048 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00133 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45930 * 325.02853 * 13 12 10 15 15 C 1.53044 * 109.45941 * 84.99683 * 13 12 10 16 16 C 1.53194 * 109.30939 * 181.37371 * 15 13 12 17 17 N 1.46928 * 108.77571 * 305.36478 * 16 15 13 18 18 C 1.36940 * 120.63047 * 233.59041 * 17 16 15 19 19 H 1.08001 * 120.00074 * 152.41655 * 18 17 16 20 20 C 1.38810 * 119.99568 * 332.41191 * 18 17 16 21 21 N 1.31612 * 120.00342 * 334.89674 * 20 18 17 22 22 Si 1.86802 * 119.99639 * 154.90100 * 20 18 17 23 23 H 1.48502 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47133 * 119.99630 * 22 20 18 25 25 H 1.48491 * 109.47174 * 239.99763 * 22 20 18 26 26 C 1.46920 * 118.73725 * 53.86205 * 17 16 15 27 27 C 1.53036 * 109.44987 * 205.06109 * 13 12 10 28 28 C 1.53004 * 109.49653 * 298.57085 * 27 13 12 29 29 C 1.52997 * 109.49794 * 58.63218 * 27 13 12 30 30 H 1.09004 * 109.46793 * 270.16350 * 1 2 3 31 31 H 1.08997 * 109.46993 * 30.16511 * 1 2 3 32 32 H 1.08998 * 109.47015 * 150.16696 * 1 2 3 33 33 H 1.08998 * 115.55018 * 154.37131 * 5 4 3 34 34 H 1.09005 * 117.49717 * 0.02562 * 6 5 4 35 35 H 1.08999 * 117.49412 * 145.02256 * 6 5 4 36 36 H 1.09002 * 117.49768 * 252.50838 * 7 6 5 37 37 H 1.08991 * 117.51608 * 107.48547 * 7 6 5 38 38 H 0.97000 * 119.99856 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.49812 * 61.42205 * 15 13 12 40 40 H 1.08993 * 109.52501 * 301.34058 * 15 13 12 41 41 H 1.09002 * 109.58109 * 185.58012 * 16 15 13 42 42 H 1.08999 * 109.70537 * 65.22289 * 16 15 13 43 43 H 0.97002 * 120.00390 * 354.25820 * 21 20 18 44 44 H 1.09002 * 109.58833 * 65.92731 * 26 17 16 45 45 H 1.09006 * 109.58837 * 186.34998 * 26 17 16 46 46 H 1.09002 * 109.46977 * 59.99819 * 28 27 13 47 47 H 1.08994 * 109.46971 * 179.97438 * 28 27 13 48 48 H 1.09003 * 109.47494 * 299.99957 * 28 27 13 49 49 H 1.09006 * 109.47001 * 60.00316 * 29 27 13 50 50 H 1.08999 * 109.47335 * 180.02562 * 29 27 13 51 51 H 1.08992 * 109.47216 * 300.00431 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6581 -0.0051 5 6 4.7929 1.5508 -0.0126 6 6 4.5683 3.0507 0.1897 7 6 4.9541 2.5142 -1.1903 8 7 3.6002 -0.6411 -0.0032 9 6 2.3170 -1.0936 0.0027 10 6 1.8854 -2.5031 0.0060 11 8 0.7003 -2.7762 0.0108 12 7 2.8042 -3.4893 0.0037 13 6 2.3753 -4.8901 0.0065 14 1 1.4657 -4.9902 0.5988 15 6 2.1007 -5.3420 -1.4297 16 6 1.6196 -6.7965 -1.4198 17 7 2.6088 -7.6169 -0.7076 18 6 3.1438 -8.7319 -1.2958 19 1 4.1309 -9.0690 -1.0160 20 6 2.4172 -9.4287 -2.2515 21 7 1.1027 -9.3636 -2.2555 22 14 3.3053 -10.4591 -3.5318 23 1 4.7710 -10.3668 -3.3116 24 1 2.8756 -11.8755 -3.4122 25 1 2.9754 -9.9545 -4.8888 26 6 3.0085 -7.2218 0.6498 27 6 3.4781 -5.7595 0.6147 28 6 4.7448 -5.6466 -0.2359 29 6 3.7753 -5.2852 2.0386 30 1 -0.3633 0.0029 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 5.6988 1.1158 0.4094 34 1 3.5423 3.3917 0.3287 35 1 5.3265 3.6026 0.7451 36 1 5.9661 2.7134 -1.5427 37 1 4.1822 2.5021 -1.9597 38 1 3.7494 -3.2715 -0.0005 39 1 3.0161 -5.2656 -2.0164 40 1 1.3319 -4.7076 -1.8706 41 1 1.5176 -7.1544 -2.4443 42 1 0.6572 -6.8618 -0.9123 43 1 0.6380 -8.8978 -1.5428 44 1 2.1576 -7.3191 1.3242 45 1 3.8230 -7.8605 0.9915 46 1 5.0739 -4.6078 -0.2615 47 1 5.5301 -6.2656 0.1979 48 1 4.5330 -5.9857 -1.2500 49 1 2.8729 -5.3668 2.6446 50 1 4.5611 -5.9044 2.4713 51 1 4.1038 -4.2462 2.0144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941136027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:16 Heat of formation + Delta-G solvation = 24.611875 kcal Electronic energy + Delta-G solvation = -31651.608867 eV Core-core repulsion = 27553.829338 eV Total energy + Delta-G solvation = -4097.779529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.68758 -39.98824 -38.20651 -37.65546 -35.08030 -34.83790 -33.15097 -32.43352 -31.35113 -29.87144 -27.89028 -26.90761 -25.87999 -25.21562 -24.19308 -23.14472 -22.92254 -22.22129 -21.12509 -20.56589 -20.04224 -18.45001 -17.59690 -17.29444 -17.21365 -16.72859 -15.82935 -15.62255 -14.96944 -14.70539 -14.42242 -14.30049 -14.02976 -13.72700 -13.66392 -13.51284 -13.42356 -13.32252 -12.92566 -12.72553 -12.59328 -12.33231 -12.11539 -11.95510 -11.82876 -11.57348 -11.28047 -11.12849 -11.10817 -10.97827 -10.92500 -10.87278 -10.71135 -10.54461 -10.29458 -10.09705 -9.98115 -9.91699 -9.78233 -9.25601 -8.96087 -8.62532 -8.31142 -6.84723 -6.02949 -3.19050 0.89480 1.75974 2.14994 3.15240 3.21594 3.38800 3.53119 3.54951 3.56702 3.69047 4.17654 4.33293 4.44547 4.49125 4.61678 4.76492 4.93134 5.04352 5.08947 5.18260 5.18554 5.23744 5.29965 5.33710 5.40137 5.47233 5.53485 5.54610 5.64400 5.77135 5.81996 5.82128 5.89957 5.94799 6.03563 6.13015 6.23828 6.28906 6.36772 6.45023 6.51794 6.58299 6.73084 6.75741 6.85315 6.92629 7.12615 7.23156 7.26726 7.73541 8.04598 8.31736 8.61255 9.15024 9.88318 10.32952 11.25649 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002512 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.251347 B =11142.547004 C =11441.385839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.037 3.963 3 O -0.198 6.198 4 C 0.220 3.780 5 C -0.071 4.071 6 C -0.163 4.163 7 C -0.157 4.157 8 N -0.451 5.451 9 C -0.070 4.070 10 C 0.598 3.402 11 O -0.536 6.536 12 N -0.701 5.701 13 C 0.164 3.836 14 H 0.082 0.918 15 C -0.145 4.145 16 C 0.154 3.846 17 N -0.596 5.596 18 C -0.346 4.346 19 H 0.057 0.943 20 C -0.025 4.025 21 N -0.917 5.917 22 Si 1.067 2.933 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.162 3.838 27 C -0.088 4.088 28 C -0.131 4.131 29 C -0.137 4.137 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.148 0.852 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.404 0.596 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.270 0.730 44 H 0.018 0.982 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 25.191 6.027 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 O -0.085 6.085 4 C 0.012 3.988 5 C -0.090 4.090 6 C -0.200 4.200 7 C -0.195 4.195 8 N -0.180 5.180 9 C -0.190 4.190 10 C 0.383 3.617 11 O -0.414 6.414 12 N -0.351 5.351 13 C 0.060 3.940 14 H 0.100 0.900 15 C -0.185 4.185 16 C 0.027 3.973 17 N -0.319 5.319 18 C -0.475 4.475 19 H 0.074 0.926 20 C -0.227 4.227 21 N -0.557 5.557 22 Si 0.898 3.102 23 H -0.219 1.219 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.035 3.965 27 C -0.091 4.091 28 C -0.188 4.188 29 C -0.195 4.195 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.240 0.760 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.662 23.612 4.670 24.726 hybrid contribution 0.212 1.474 1.453 2.081 sum 5.874 25.086 6.123 26.482 Atomic orbital electron populations 1.20607 0.82378 1.05474 1.04679 1.23747 0.95068 0.83170 0.99923 1.84263 1.17818 1.36398 1.70036 1.24917 0.83117 0.89560 1.01239 1.20256 0.92252 0.89465 1.06992 1.23121 1.04075 0.93108 0.99743 1.23149 1.04163 1.00554 0.91680 1.70682 1.21710 1.08643 1.16999 1.21647 0.88573 0.95938 1.12856 1.16698 0.85751 0.82392 0.76854 1.90784 1.16207 1.83116 1.51300 1.46118 1.09873 1.06309 1.72768 1.21039 0.97556 0.77604 0.97769 0.89970 1.22515 1.01284 0.99498 0.95188 1.20922 0.90739 0.87017 0.98607 1.44135 1.49515 1.27297 1.10918 1.19984 0.99066 1.04703 1.23787 0.92567 1.25805 0.95984 0.98696 1.02201 1.70709 1.07168 1.41435 1.36390 0.83502 0.74380 0.75888 0.76474 1.21870 1.22199 1.21747 1.20993 0.97242 0.90476 0.87804 1.21419 0.95193 0.98082 0.94366 1.21778 0.96029 0.99236 1.01784 1.21809 1.01225 1.00358 0.96123 0.89028 0.90267 0.86686 0.83439 0.87840 0.87124 0.86983 0.88123 0.75950 0.91763 0.92689 0.89974 0.96347 0.91886 0.96406 0.92174 0.94501 0.93063 0.90634 0.93005 0.92637 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.88 36.01 0.36 -0.38 16 2 C 0.04 0.46 7.44 -35.08 -0.26 0.20 16 3 O -0.20 -2.28 10.40 6.48 0.07 -2.21 16 4 C 0.22 2.50 7.80 -13.08 -0.10 2.40 16 5 C -0.07 -0.52 6.33 -91.77 -0.58 -1.10 16 6 C -0.16 -0.84 10.16 -26.73 -0.27 -1.11 16 7 C -0.16 -0.87 10.23 -26.73 -0.27 -1.15 16 8 N -0.45 -6.19 11.06 -7.65 -0.08 -6.27 16 9 C -0.07 -1.02 6.99 -83.02 -0.58 -1.61 16 10 C 0.60 9.90 7.78 -12.52 -0.10 9.80 16 11 O -0.54 -9.92 14.47 5.27 0.08 -9.84 16 12 N -0.70 -11.20 4.28 -54.84 -0.23 -11.44 16 13 C 0.16 2.93 1.57 -67.89 -0.11 2.82 16 14 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 15 C -0.14 -2.90 5.31 -26.61 -0.14 -3.05 16 16 C 0.15 3.66 4.69 -3.71 -0.02 3.64 16 17 N -0.60 -14.61 2.28 -172.05 -0.39 -15.00 16 18 C -0.35 -9.48 9.49 -15.06 -0.14 -9.63 16 19 H 0.06 1.55 7.94 -52.49 -0.42 1.13 16 20 C -0.02 -0.70 4.68 -17.43 -0.08 -0.78 16 21 N -0.92 -27.53 12.40 55.49 0.69 -26.85 16 22 Si 1.07 25.40 29.99 -169.99 -5.10 20.30 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.16 3.36 5.24 -3.49 -0.02 3.35 16 27 C -0.09 -1.51 0.56 -154.17 -0.09 -1.60 16 28 C -0.13 -2.18 7.83 37.16 0.29 -1.89 16 29 C -0.14 -1.99 8.31 37.16 0.31 -1.69 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.32 6.48 -51.93 -0.34 0.98 16 33 H 0.15 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 6.03 6.39 -40.82 -0.26 5.77 16 39 H 0.06 1.30 6.34 -51.93 -0.33 0.97 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 2.19 6.29 -51.93 -0.33 1.86 16 42 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 43 H 0.27 8.20 6.71 -40.82 -0.27 7.93 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 46 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.47 5.97 -51.93 -0.31 1.16 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -32.13 401.43 -8.78 -40.91 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.05 Total: 6.12 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.81 Total: -1.77 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.02 Total: -59.56 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.14 Total: -12.06 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.13 -8.78 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941136027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.523 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds