Wall clock time and date at job start Wed Apr 1 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34260 * 126.52168 * 2 1 4 4 C 1.34057 * 108.22608 * 180.22924 * 3 2 1 5 5 C 1.50696 * 125.38041 * 179.73347 * 4 3 2 6 6 C 1.53004 * 117.49890 * 8.65839 * 5 4 3 7 7 C 1.53004 * 60.00037 * 252.51432 * 6 5 4 8 8 N 1.29937 * 109.23960 * 359.76500 * 4 3 2 9 9 C 1.36066 * 108.47950 * 0.02562 * 8 4 3 10 10 C 1.47420 * 126.44870 * 179.97438 * 9 8 4 11 11 O 1.21613 * 120.00027 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00048 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00133 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45930 * 325.02853 * 13 12 10 15 15 C 1.53044 * 109.45941 * 84.99683 * 13 12 10 16 16 C 1.53194 * 109.30939 * 181.37371 * 15 13 12 17 17 N 1.46928 * 108.77571 * 305.36478 * 16 15 13 18 18 C 1.36940 * 120.63047 * 233.59041 * 17 16 15 19 19 H 1.08001 * 120.00074 * 152.41655 * 18 17 16 20 20 C 1.38810 * 119.99568 * 332.41191 * 18 17 16 21 21 N 1.31612 * 120.00342 * 334.89674 * 20 18 17 22 22 Si 1.86802 * 119.99639 * 154.90100 * 20 18 17 23 23 H 1.48502 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47133 * 119.99630 * 22 20 18 25 25 H 1.48491 * 109.47174 * 239.99763 * 22 20 18 26 26 C 1.46920 * 118.73725 * 53.86205 * 17 16 15 27 27 C 1.53036 * 109.44987 * 205.06109 * 13 12 10 28 28 C 1.53004 * 109.49653 * 298.57085 * 27 13 12 29 29 C 1.52997 * 109.49794 * 58.63218 * 27 13 12 30 30 H 1.09004 * 109.46793 * 270.16350 * 1 2 3 31 31 H 1.08997 * 109.46993 * 30.16511 * 1 2 3 32 32 H 1.08998 * 109.47015 * 150.16696 * 1 2 3 33 33 H 1.08998 * 115.55018 * 154.37131 * 5 4 3 34 34 H 1.09005 * 117.49717 * 0.02562 * 6 5 4 35 35 H 1.08999 * 117.49412 * 145.02256 * 6 5 4 36 36 H 1.09002 * 117.49768 * 252.50838 * 7 6 5 37 37 H 1.08991 * 117.51608 * 107.48547 * 7 6 5 38 38 H 0.97000 * 119.99856 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.49812 * 61.42205 * 15 13 12 40 40 H 1.08993 * 109.52501 * 301.34058 * 15 13 12 41 41 H 1.09002 * 109.58109 * 185.58012 * 16 15 13 42 42 H 1.08999 * 109.70537 * 65.22289 * 16 15 13 43 43 H 0.97002 * 120.00390 * 354.25820 * 21 20 18 44 44 H 1.09002 * 109.58833 * 65.92731 * 26 17 16 45 45 H 1.09006 * 109.58837 * 186.34998 * 26 17 16 46 46 H 1.09002 * 109.46977 * 59.99819 * 28 27 13 47 47 H 1.08994 * 109.46971 * 179.97438 * 28 27 13 48 48 H 1.09003 * 109.47494 * 299.99957 * 28 27 13 49 49 H 1.09006 * 109.47001 * 60.00316 * 29 27 13 50 50 H 1.08999 * 109.47335 * 180.02562 * 29 27 13 51 51 H 1.08992 * 109.47216 * 300.00431 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6581 -0.0051 5 6 4.7929 1.5508 -0.0126 6 6 4.5683 3.0507 0.1897 7 6 4.9541 2.5142 -1.1903 8 7 3.6002 -0.6411 -0.0032 9 6 2.3170 -1.0936 0.0027 10 6 1.8854 -2.5031 0.0060 11 8 0.7003 -2.7762 0.0108 12 7 2.8042 -3.4893 0.0037 13 6 2.3753 -4.8901 0.0065 14 1 1.4657 -4.9902 0.5988 15 6 2.1007 -5.3420 -1.4297 16 6 1.6196 -6.7965 -1.4198 17 7 2.6088 -7.6169 -0.7076 18 6 3.1438 -8.7319 -1.2958 19 1 4.1309 -9.0690 -1.0160 20 6 2.4172 -9.4287 -2.2515 21 7 1.1027 -9.3636 -2.2555 22 14 3.3053 -10.4591 -3.5318 23 1 4.7710 -10.3668 -3.3116 24 1 2.8756 -11.8755 -3.4122 25 1 2.9754 -9.9545 -4.8888 26 6 3.0085 -7.2218 0.6498 27 6 3.4781 -5.7595 0.6147 28 6 4.7448 -5.6466 -0.2359 29 6 3.7753 -5.2852 2.0386 30 1 -0.3633 0.0029 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 5.6988 1.1158 0.4094 34 1 3.5423 3.3917 0.3287 35 1 5.3265 3.6026 0.7451 36 1 5.9661 2.7134 -1.5427 37 1 4.1822 2.5021 -1.9597 38 1 3.7494 -3.2715 -0.0005 39 1 3.0161 -5.2656 -2.0164 40 1 1.3319 -4.7076 -1.8706 41 1 1.5176 -7.1544 -2.4443 42 1 0.6572 -6.8618 -0.9123 43 1 0.6380 -8.8978 -1.5428 44 1 2.1576 -7.3191 1.3242 45 1 3.8230 -7.8605 0.9915 46 1 5.0739 -4.6078 -0.2615 47 1 5.5301 -6.2656 0.1979 48 1 4.5330 -5.9857 -1.2500 49 1 2.8729 -5.3668 2.6446 50 1 4.5611 -5.9044 2.4713 51 1 4.1038 -4.2462 2.0144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941136027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:15 Heat of formation + Delta-G solvation = 4.124988 kcal Electronic energy + Delta-G solvation = -31652.497245 eV Core-core repulsion = 27553.829338 eV Total energy + Delta-G solvation = -4098.667907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.61794 -41.43550 -39.68151 -38.17166 -36.66943 -36.03980 -34.61990 -33.34288 -33.20791 -31.66964 -28.85222 -28.24705 -27.39720 -26.93967 -25.42131 -24.26304 -23.56809 -23.26919 -22.45404 -22.13449 -21.20890 -19.76175 -19.45248 -18.71106 -18.13791 -17.50366 -17.22850 -16.50505 -16.22987 -16.11186 -16.02322 -15.62381 -15.41118 -15.32543 -15.25786 -14.94001 -14.71594 -14.29188 -14.06930 -13.96853 -13.59204 -13.58085 -13.29466 -12.95734 -12.83406 -12.72742 -12.66681 -12.58740 -12.47157 -12.46337 -12.35461 -11.96154 -11.88701 -11.82243 -11.76413 -11.65255 -11.56758 -11.48590 -11.31887 -11.09624 -10.45612 -10.17945 -9.75675 -8.93103 -8.23383 -5.37942 -0.08833 0.79229 1.28450 1.58802 1.66551 1.82203 1.96018 2.10886 2.59300 2.66039 2.88539 3.22391 3.44506 3.48727 3.56134 3.61993 3.73144 3.82483 3.92687 3.92975 4.05457 4.11146 4.22192 4.29506 4.37788 4.46216 4.49508 4.51472 4.68120 4.72428 4.73810 4.74802 4.79082 4.84611 4.87297 4.91942 4.97847 4.99230 5.02950 5.06574 5.09686 5.12681 5.17641 5.18278 5.26339 5.30393 5.40742 5.56792 5.86856 6.22075 6.39379 6.51885 7.02609 7.04707 7.77934 8.23488 9.02210 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002512 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.251347 B =11142.547004 C =11441.385839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.045 3.955 3 O -0.194 6.194 4 C 0.228 3.772 5 C -0.094 4.094 6 C -0.147 4.147 7 C -0.150 4.150 8 N -0.476 5.476 9 C -0.101 4.101 10 C 0.597 3.403 11 O -0.562 6.562 12 N -0.692 5.692 13 C 0.176 3.824 14 H 0.064 0.936 15 C -0.130 4.130 16 C 0.164 3.836 17 N -0.608 5.608 18 C -0.344 4.344 19 H 0.056 0.944 20 C -0.079 4.079 21 N -0.946 5.946 22 Si 1.117 2.883 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.291 1.291 26 C 0.158 3.842 27 C -0.077 4.077 28 C -0.124 4.124 29 C -0.129 4.129 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.048 0.952 42 H -0.001 1.001 43 H 0.253 0.747 44 H 0.011 0.989 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.584 27.914 6.743 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.012 4.012 3 O -0.081 6.081 4 C 0.019 3.981 5 C -0.112 4.112 6 C -0.184 4.184 7 C -0.188 4.188 8 N -0.205 5.205 9 C -0.219 4.219 10 C 0.384 3.616 11 O -0.442 6.442 12 N -0.343 5.343 13 C 0.072 3.928 14 H 0.082 0.918 15 C -0.170 4.170 16 C 0.038 3.962 17 N -0.332 5.332 18 C -0.474 4.474 19 H 0.074 0.926 20 C -0.275 4.275 21 N -0.589 5.589 22 Si 0.942 3.058 23 H -0.195 1.195 24 H -0.220 1.220 25 H -0.217 1.217 26 C 0.032 3.968 27 C -0.080 4.080 28 C -0.181 4.181 29 C -0.187 4.187 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.178 0.822 34 H 0.117 0.883 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.109 0.891 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.029 0.971 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.123 26.361 5.417 28.111 hybrid contribution -0.547 0.738 1.276 1.572 sum 7.576 27.099 6.694 28.923 Atomic orbital electron populations 1.20685 0.80754 1.05887 1.05668 1.24147 0.96041 0.82890 0.98154 1.84302 1.18004 1.35850 1.69976 1.25786 0.83849 0.89514 0.98913 1.20584 0.91090 0.90227 1.09335 1.23243 1.04615 0.91126 0.99446 1.23260 1.05148 0.99024 0.91395 1.70638 1.21221 1.09896 1.18699 1.21402 0.89764 0.95162 1.15612 1.16970 0.85346 0.83306 0.75980 1.90770 1.17257 1.83761 1.52389 1.45882 1.10248 1.05216 1.72912 1.20694 0.97349 0.79080 0.95688 0.91830 1.22294 1.00888 0.96740 0.97071 1.20667 0.90163 0.89125 0.96293 1.44294 1.49436 1.26920 1.12548 1.20224 0.98791 1.04904 1.23462 0.92631 1.27150 0.95937 1.00086 1.04338 1.70838 1.08273 1.43305 1.36441 0.82838 0.74524 0.74389 0.74057 1.19539 1.21995 1.21745 1.21150 0.96978 0.92990 0.85651 1.21260 0.94951 0.95206 0.96540 1.21697 0.95744 1.00936 0.99764 1.21741 1.01789 1.01428 0.93760 0.87637 0.87444 0.88564 0.82182 0.88343 0.84675 0.84845 0.89054 0.75014 0.91628 0.93124 0.93340 0.98314 0.93688 0.97073 0.91976 0.91981 0.92116 0.93599 0.93171 0.90978 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.88 71.24 0.70 -0.66 16 2 C 0.04 1.07 7.44 25.19 0.19 1.26 16 3 O -0.19 -4.14 10.40 0.29 0.00 -4.14 16 4 C 0.23 4.79 7.80 88.39 0.69 5.48 16 5 C -0.09 -1.14 6.33 -11.54 -0.07 -1.21 16 6 C -0.15 -1.04 10.16 30.60 0.31 -0.73 16 7 C -0.15 -1.23 10.23 30.60 0.31 -0.92 16 8 N -0.48 -12.49 11.06 -293.03 -3.24 -15.73 16 9 C -0.10 -2.89 6.99 40.41 0.28 -2.60 16 10 C 0.60 19.78 7.78 86.66 0.67 20.45 16 11 O -0.56 -21.22 14.47 -4.07 -0.06 -21.28 16 12 N -0.69 -21.78 4.28 -445.67 -1.91 -23.68 16 13 C 0.18 6.36 1.57 45.02 0.07 6.43 16 14 H 0.06 2.57 7.57 -2.39 -0.02 2.55 16 15 C -0.13 -5.38 5.31 30.67 0.16 -5.22 16 16 C 0.16 8.23 4.69 86.36 0.41 8.63 16 17 N -0.61 -30.69 2.28 -698.25 -1.59 -32.29 16 18 C -0.34 -19.17 9.49 84.03 0.80 -18.37 16 19 H 0.06 3.07 7.94 -2.91 -0.02 3.04 16 20 C -0.08 -4.56 4.68 84.86 0.40 -4.16 16 21 N -0.95 -59.02 12.40 21.65 0.27 -58.75 16 22 Si 1.12 51.83 29.99 68.60 2.06 53.88 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 C 0.16 6.61 5.24 86.51 0.45 7.07 16 27 C -0.08 -2.58 0.56 -51.96 -0.03 -2.61 16 28 C -0.12 -3.94 7.83 71.98 0.56 -3.37 16 29 C -0.13 -3.48 8.31 71.98 0.60 -2.88 16 30 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 2.21 6.48 -2.39 -0.02 2.19 16 33 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 0.83 7.94 -2.38 -0.02 0.82 16 35 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.41 11.70 6.39 -92.71 -0.59 11.11 16 39 H 0.07 2.70 6.34 -2.39 -0.02 2.69 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.74 6.29 -2.39 -0.02 2.72 16 42 H 0.00 -0.06 7.86 -2.39 -0.02 -0.08 16 43 H 0.25 16.22 6.71 -92.71 -0.62 15.60 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 2.55 7.93 -2.38 -0.02 2.53 16 46 H 0.06 1.65 6.58 -2.39 -0.02 1.63 16 47 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.04 1.74 5.97 -2.39 -0.01 1.73 16 49 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.06 1.56 7.36 -2.39 -0.02 1.54 16 Total: -1.00 -72.43 401.43 2.54 -69.89 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.50 Total: 25.52 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.51 Total: 6.58 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -6.47 Total: -130.45 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.06 Total: 53.88 kcal Total: -72.43 2.54 -69.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941136027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds