Wall clock time and date at job start Wed Apr 1 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.52399 * 2 1 4 4 C 1.53186 * 109.49725 * 239.91951 * 2 1 3 5 5 N 1.46928 * 108.77614 * 185.41550 * 4 2 1 6 6 C 1.36943 * 120.63167 * 233.58445 * 5 4 2 7 7 H 1.07992 * 120.00049 * 151.84144 * 6 5 4 8 8 C 1.38810 * 119.99664 * 331.84556 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.06631 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.07686 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99588 * 10 8 6 12 12 H 1.48503 * 109.47356 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46998 * 299.99309 * 10 8 6 14 14 C 1.46924 * 118.73905 * 53.60628 * 5 4 2 15 15 C 1.53193 * 108.77828 * 306.39186 * 14 5 4 16 16 C 1.53037 * 109.30894 * 54.63532 * 15 14 5 17 17 H 1.09004 * 109.46399 * 58.65734 * 16 15 14 18 18 N 1.46503 * 109.45877 * 178.63265 * 16 15 14 19 19 C 1.34775 * 119.99445 * 275.02504 * 18 16 15 20 20 O 1.21609 * 120.00679 * 359.97438 * 19 18 16 21 21 C 1.47420 * 119.99806 * 180.02562 * 19 18 16 22 22 C 1.36096 * 126.45063 * 179.69073 * 21 19 18 23 23 O 1.34265 * 106.94862 * 179.84165 * 22 21 19 24 24 C 1.34046 * 108.22635 * 0.42087 * 23 22 21 25 25 C 1.50700 * 125.37866 * 179.69503 * 24 23 22 26 26 C 1.53003 * 109.47347 * 270.04450 * 25 24 23 27 27 C 1.52992 * 117.49898 * 243.61958 * 26 25 24 28 28 C 1.52993 * 117.49845 * 174.99687 * 26 25 24 29 29 N 1.29937 * 109.24481 * 359.73764 * 24 23 22 30 30 H 1.09005 * 109.46810 * 299.91823 * 1 2 3 31 31 H 1.08995 * 109.46889 * 59.91726 * 1 2 3 32 32 H 1.08993 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47024 * 300.07855 * 3 2 1 35 35 H 1.08996 * 109.47149 * 60.08272 * 3 2 1 36 36 H 1.08994 * 109.58742 * 65.62604 * 4 2 1 37 37 H 1.09000 * 109.70372 * 305.26777 * 4 2 1 38 38 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.58596 * 186.60210 * 14 5 4 40 40 H 1.09002 * 109.70839 * 66.25347 * 14 5 4 41 41 H 1.09001 * 109.49405 * 294.68433 * 15 14 5 42 42 H 1.09001 * 109.52588 * 174.60208 * 15 14 5 43 43 H 0.96999 * 120.00258 * 95.03060 * 18 16 15 44 44 H 1.07993 * 126.52510 * 359.97438 * 22 21 19 45 45 H 1.09003 * 109.46969 * 30.04193 * 25 24 23 46 46 H 1.08995 * 109.47389 * 150.04183 * 25 24 23 47 47 H 1.09003 * 115.54369 * 29.32908 * 26 25 24 48 48 H 1.09000 * 117.49871 * 0.02562 * 27 26 25 49 49 H 1.09005 * 117.50239 * 145.01935 * 27 26 25 50 50 H 1.09005 * 117.50115 * 214.98045 * 28 26 25 51 51 H 1.08998 * 117.50112 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3794 -2.1945 7 1 5.2961 -0.0327 -1.9920 8 6 3.8047 -0.3690 -3.4936 9 7 2.7414 -1.0807 -3.8023 10 14 4.6560 0.6548 -4.8037 11 1 6.0613 0.1987 -4.9529 12 1 3.9442 0.4947 -6.0972 13 1 4.6395 2.0847 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2661 16 6 2.0409 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2353 18 7 1.5266 -0.0526 2.4452 19 6 1.3977 -0.7379 3.5985 20 8 1.7079 -1.9128 3.6458 21 6 0.8797 -0.0634 4.8027 22 6 0.6913 -0.6268 6.0271 23 8 0.2107 0.3353 6.8309 24 6 0.0972 1.4624 6.1143 25 6 -0.4116 2.7812 6.6369 26 6 -1.9275 2.8558 6.4436 27 6 -2.4677 3.9376 5.5063 28 6 -2.6539 4.0733 7.0187 29 7 0.4944 1.2382 4.8976 30 1 -0.3633 0.5126 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1314 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7638 -0.1579 -2.1388 37 1 1.6054 -1.7215 -1.3005 38 1 2.3996 -1.0731 -4.7100 39 1 5.1896 -1.3247 -0.0138 40 1 3.8398 -2.4823 0.0881 41 1 3.9160 0.3388 1.2541 42 1 3.9334 -1.1892 2.1674 43 1 1.2787 0.8844 2.4074 44 1 0.8924 -1.6520 6.3007 45 1 -0.1759 2.8669 7.6977 46 1 0.0647 3.5961 6.0919 47 1 -2.4517 1.9003 6.4651 48 1 -1.7431 4.5959 5.0270 49 1 -3.3475 3.6940 4.9106 50 1 -3.6563 3.9189 7.4183 51 1 -2.0519 4.8209 7.5353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941136136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:13 Heat of formation + Delta-G solvation = 24.572794 kcal Electronic energy + Delta-G solvation = -31312.695083 eV Core-core repulsion = 27214.913860 eV Total energy + Delta-G solvation = -4097.781224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.64341 -39.89125 -38.09196 -37.95949 -35.06571 -34.53439 -32.76513 -32.16863 -31.87620 -29.42879 -28.21926 -26.70990 -25.93321 -25.47617 -23.82905 -22.79697 -22.35308 -21.94947 -20.97651 -20.55650 -20.18414 -18.67303 -17.68569 -17.02787 -16.90428 -16.49268 -16.10884 -15.61653 -14.86405 -14.81321 -14.70156 -14.50893 -13.99665 -13.86368 -13.74394 -13.57409 -13.29332 -13.22785 -13.12714 -12.64475 -12.28212 -12.21523 -11.93079 -11.59324 -11.46474 -11.45608 -11.25710 -11.03780 -11.01129 -10.85530 -10.83339 -10.67979 -10.54983 -10.47636 -10.22196 -10.08830 -10.04006 -9.90895 -9.62972 -9.41010 -9.23136 -8.62457 -8.42070 -6.64278 -5.77000 -3.18964 0.94783 1.83558 2.29961 3.21617 3.34218 3.37507 3.39720 3.45486 3.46551 3.63200 4.25214 4.43004 4.47425 4.51230 4.63291 4.69164 4.87882 5.06101 5.12878 5.23599 5.23831 5.31695 5.35284 5.44083 5.45231 5.50907 5.59201 5.63287 5.68914 5.72753 5.84785 5.91216 6.00784 6.13679 6.16100 6.25733 6.36141 6.45236 6.50582 6.52230 6.70040 6.74669 6.85846 6.95862 7.01848 7.08556 7.25729 7.35266 7.64710 7.77767 7.82935 8.34899 8.47221 9.23260 9.86518 10.43836 11.31674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002460 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.442347 B =11378.973085 C =12357.467494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.148 3.852 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.082 0.918 18 N -0.699 5.699 19 C 0.595 3.405 20 O -0.541 6.541 21 C -0.065 4.065 22 C 0.006 3.994 23 O -0.197 6.197 24 C 0.198 3.802 25 C 0.009 3.991 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.174 4.174 29 N -0.453 5.453 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.254 0.746 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.405 0.595 44 H 0.230 0.770 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 8.833 22.533 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.185 4.185 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.021 3.979 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.349 5.349 19 C 0.380 3.620 20 O -0.418 6.418 21 C -0.185 4.185 22 C -0.067 4.067 23 O -0.083 6.083 24 C -0.011 4.011 25 C -0.029 4.029 26 C -0.176 4.176 27 C -0.208 4.208 28 C -0.211 4.211 29 N -0.183 5.183 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.241 0.759 44 H 0.247 0.753 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.119 0.881 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.808 8.422 21.876 25.410 hybrid contribution 0.235 0.281 -0.217 0.426 sum -9.573 8.704 21.659 25.229 Atomic orbital electron populations 1.21767 0.95388 1.01295 1.00795 1.21560 0.94496 0.96855 0.96923 1.21747 1.02548 0.94669 0.99493 1.20826 0.83094 0.96788 0.93317 1.44040 1.01651 1.69214 1.16210 1.19109 0.97921 1.35229 0.85679 0.91771 1.25026 0.98531 0.99002 0.96963 1.70014 1.25658 1.40171 1.18838 0.86402 0.78972 0.80521 0.81062 1.20943 1.21702 1.21064 1.20870 0.96646 0.94275 0.86145 1.22457 0.94660 1.01701 0.99488 1.21091 0.93947 0.96797 0.82268 0.89963 1.46177 1.64040 1.14938 1.09700 1.16774 0.77962 0.85567 0.81738 1.90821 1.51341 1.15181 1.84499 1.21999 1.08990 0.90922 0.96630 1.25294 0.98139 0.94495 0.88801 1.84379 1.63541 1.19112 1.41314 1.26106 1.00009 0.89369 0.85663 1.19696 0.93700 0.87206 1.02331 1.22144 0.93377 0.95361 1.06706 1.23096 1.03559 1.01425 0.92749 1.23017 1.01791 0.99538 0.96747 1.70783 1.14350 1.14855 1.18330 0.93740 0.92548 0.93105 0.91129 0.92908 0.95020 0.88888 0.96205 0.93597 0.92568 0.96214 0.91770 0.92772 0.75881 0.75335 0.88266 0.87237 0.87478 0.88141 0.88532 0.88477 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.31 37.16 0.31 -1.91 16 2 C -0.10 -1.77 0.56 -154.39 -0.09 -1.86 16 3 C -0.13 -2.25 7.83 37.16 0.29 -1.96 16 4 C 0.19 4.34 3.98 -3.71 -0.01 4.32 16 5 N -0.59 -14.47 2.43 -172.33 -0.42 -14.89 16 6 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 7 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 9 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 10 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 15 C -0.14 -2.67 5.31 -26.61 -0.14 -2.81 16 16 C 0.16 2.93 1.57 -67.89 -0.11 2.82 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 18 N -0.70 -11.09 4.29 -54.84 -0.23 -11.33 16 19 C 0.60 9.63 7.78 -12.52 -0.10 9.53 16 20 O -0.54 -10.12 16.55 5.27 0.09 -10.03 16 21 C -0.07 -0.88 6.99 -83.02 -0.58 -1.47 16 22 C 0.01 0.07 11.95 29.96 0.36 0.43 16 23 O -0.20 -2.01 10.73 6.50 0.07 -1.94 16 24 C 0.20 1.99 7.51 -13.08 -0.10 1.89 16 25 C 0.01 0.05 6.12 -27.88 -0.17 -0.12 16 26 C -0.16 -0.99 5.72 -90.63 -0.52 -1.51 16 27 C -0.17 -1.04 10.18 -26.74 -0.27 -1.32 16 28 C -0.17 -0.84 10.25 -26.74 -0.27 -1.11 16 29 N -0.45 -5.71 11.06 -7.65 -0.08 -5.79 16 30 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.48 6.58 -51.93 -0.34 0.13 16 36 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.19 6.33 -51.93 -0.33 0.86 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.40 6.01 6.39 -40.82 -0.26 5.75 16 44 H 0.23 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.62 7.87 -51.93 -0.41 0.21 16 47 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 48 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -31.28 406.08 -8.72 -40.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.19 Total: 5.38 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.66 Total: 1.23 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.12 Total: -57.25 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.16 Total: -11.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.28 -8.72 -40.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941136136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.571 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds