Wall clock time and date at job start Wed Apr 1 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.52399 * 2 1 4 4 C 1.53186 * 109.49725 * 239.91951 * 2 1 3 5 5 N 1.46928 * 108.77614 * 185.41550 * 4 2 1 6 6 C 1.36943 * 120.63167 * 233.58445 * 5 4 2 7 7 H 1.07992 * 120.00049 * 151.84144 * 6 5 4 8 8 C 1.38810 * 119.99664 * 331.84556 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.06631 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.07686 * 8 6 5 11 11 H 1.48495 * 109.47503 * 59.99588 * 10 8 6 12 12 H 1.48503 * 109.47356 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46998 * 299.99309 * 10 8 6 14 14 C 1.46924 * 118.73905 * 53.60628 * 5 4 2 15 15 C 1.53193 * 108.77828 * 306.39186 * 14 5 4 16 16 C 1.53037 * 109.30894 * 54.63532 * 15 14 5 17 17 H 1.09004 * 109.46399 * 58.65734 * 16 15 14 18 18 N 1.46503 * 109.45877 * 178.63265 * 16 15 14 19 19 C 1.34775 * 119.99445 * 275.02504 * 18 16 15 20 20 O 1.21609 * 120.00679 * 359.97438 * 19 18 16 21 21 C 1.47420 * 119.99806 * 180.02562 * 19 18 16 22 22 C 1.36096 * 126.45063 * 179.69073 * 21 19 18 23 23 O 1.34265 * 106.94862 * 179.84165 * 22 21 19 24 24 C 1.34046 * 108.22635 * 0.42087 * 23 22 21 25 25 C 1.50700 * 125.37866 * 179.69503 * 24 23 22 26 26 C 1.53003 * 109.47347 * 270.04450 * 25 24 23 27 27 C 1.52992 * 117.49898 * 243.61958 * 26 25 24 28 28 C 1.52993 * 117.49845 * 174.99687 * 26 25 24 29 29 N 1.29937 * 109.24481 * 359.73764 * 24 23 22 30 30 H 1.09005 * 109.46810 * 299.91823 * 1 2 3 31 31 H 1.08995 * 109.46889 * 59.91726 * 1 2 3 32 32 H 1.08993 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47024 * 300.07855 * 3 2 1 35 35 H 1.08996 * 109.47149 * 60.08272 * 3 2 1 36 36 H 1.08994 * 109.58742 * 65.62604 * 4 2 1 37 37 H 1.09000 * 109.70372 * 305.26777 * 4 2 1 38 38 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.58596 * 186.60210 * 14 5 4 40 40 H 1.09002 * 109.70839 * 66.25347 * 14 5 4 41 41 H 1.09001 * 109.49405 * 294.68433 * 15 14 5 42 42 H 1.09001 * 109.52588 * 174.60208 * 15 14 5 43 43 H 0.96999 * 120.00258 * 95.03060 * 18 16 15 44 44 H 1.07993 * 126.52510 * 359.97438 * 22 21 19 45 45 H 1.09003 * 109.46969 * 30.04193 * 25 24 23 46 46 H 1.08995 * 109.47389 * 150.04183 * 25 24 23 47 47 H 1.09003 * 115.54369 * 29.32908 * 26 25 24 48 48 H 1.09000 * 117.49871 * 0.02562 * 27 26 25 49 49 H 1.09005 * 117.50239 * 145.01935 * 27 26 25 50 50 H 1.09005 * 117.50115 * 214.98045 * 28 26 25 51 51 H 1.08998 * 117.50112 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3794 -2.1945 7 1 5.2961 -0.0327 -1.9920 8 6 3.8047 -0.3690 -3.4936 9 7 2.7414 -1.0807 -3.8023 10 14 4.6560 0.6548 -4.8037 11 1 6.0613 0.1987 -4.9529 12 1 3.9442 0.4947 -6.0972 13 1 4.6395 2.0847 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2661 16 6 2.0409 -0.7231 1.2484 17 1 1.6967 -1.7573 1.2353 18 7 1.5266 -0.0526 2.4452 19 6 1.3977 -0.7379 3.5985 20 8 1.7079 -1.9128 3.6458 21 6 0.8797 -0.0634 4.8027 22 6 0.6913 -0.6268 6.0271 23 8 0.2107 0.3353 6.8309 24 6 0.0972 1.4624 6.1143 25 6 -0.4116 2.7812 6.6369 26 6 -1.9275 2.8558 6.4436 27 6 -2.4677 3.9376 5.5063 28 6 -2.6539 4.0733 7.0187 29 7 0.4944 1.2382 4.8976 30 1 -0.3633 0.5126 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1314 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7638 -0.1579 -2.1388 37 1 1.6054 -1.7215 -1.3005 38 1 2.3996 -1.0731 -4.7100 39 1 5.1896 -1.3247 -0.0138 40 1 3.8398 -2.4823 0.0881 41 1 3.9160 0.3388 1.2541 42 1 3.9334 -1.1892 2.1674 43 1 1.2787 0.8844 2.4074 44 1 0.8924 -1.6520 6.3007 45 1 -0.1759 2.8669 7.6977 46 1 0.0647 3.5961 6.0919 47 1 -2.4517 1.9003 6.4651 48 1 -1.7431 4.5959 5.0270 49 1 -3.3475 3.6940 4.9106 50 1 -3.6563 3.9189 7.4183 51 1 -2.0519 4.8209 7.5353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941136136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:12 Heat of formation + Delta-G solvation = 4.993402 kcal Electronic energy + Delta-G solvation = -31313.544110 eV Core-core repulsion = 27214.913860 eV Total energy + Delta-G solvation = -4098.630250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.48762 -41.32672 -39.53122 -38.46707 -36.30886 -35.92916 -34.25611 -33.82516 -32.81763 -31.18525 -28.97071 -28.17645 -27.62312 -27.12698 -25.21892 -23.66595 -23.20045 -22.84963 -22.30517 -21.74181 -21.25393 -19.92793 -19.20311 -18.49711 -17.85131 -17.57888 -17.09991 -16.77947 -16.62917 -16.03930 -15.83801 -15.57452 -15.28817 -15.14419 -15.01041 -14.94026 -14.70908 -14.50581 -14.29707 -13.87676 -13.74414 -13.27305 -13.07133 -12.90179 -12.75934 -12.73928 -12.60745 -12.46705 -12.35284 -12.30660 -12.25220 -11.97226 -11.89128 -11.83824 -11.68909 -11.41581 -11.33124 -11.27097 -11.07952 -10.87804 -10.51837 -10.19010 -9.92702 -8.66925 -7.85268 -5.30434 0.04855 0.92345 1.48725 1.50283 1.53062 1.57176 2.05102 2.20952 2.52820 2.77352 2.93972 3.29808 3.58778 3.67146 3.73141 3.77471 3.82065 3.95448 4.03444 4.08403 4.12374 4.28249 4.32333 4.42887 4.45674 4.55128 4.60486 4.64286 4.70667 4.75938 4.77770 4.83896 4.88008 4.93358 4.95064 5.01847 5.02675 5.07968 5.12218 5.23016 5.28513 5.29501 5.31762 5.32464 5.40760 5.49507 5.60598 5.68953 5.73879 6.30514 6.41043 6.59777 7.08921 7.16510 7.85931 8.39579 9.21433 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002460 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.442347 B =11378.973085 C =12357.467494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.119 4.119 4 C 0.196 3.804 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.276 1.276 14 C 0.145 3.855 15 C -0.128 4.128 16 C 0.174 3.826 17 H 0.059 0.941 18 N -0.692 5.692 19 C 0.597 3.403 20 O -0.572 6.572 21 C -0.097 4.097 22 C 0.027 3.973 23 O -0.193 6.193 24 C 0.207 3.793 25 C 0.011 3.989 26 C -0.165 4.165 27 C -0.185 4.185 28 C -0.157 4.157 29 N -0.476 5.476 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.065 0.935 37 H -0.011 1.011 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.412 0.588 44 H 0.254 0.746 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 10.973 25.051 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.176 4.176 4 C 0.069 3.931 5 N -0.325 5.325 6 C -0.387 4.387 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.204 1.204 12 H -0.222 1.222 13 H -0.202 1.202 14 C 0.019 3.981 15 C -0.168 4.168 16 C 0.070 3.930 17 H 0.078 0.922 18 N -0.342 5.342 19 C 0.383 3.617 20 O -0.452 6.452 21 C -0.216 4.216 22 C -0.047 4.047 23 O -0.078 6.078 24 C -0.003 4.003 25 C -0.027 4.027 26 C -0.184 4.184 27 C -0.222 4.222 28 C -0.194 4.194 29 N -0.206 5.206 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.007 0.993 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.250 0.750 44 H 0.270 0.730 45 H 0.143 0.857 46 H 0.137 0.863 47 H 0.114 0.886 48 H 0.121 0.879 49 H 0.108 0.892 50 H 0.120 0.880 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.135 10.590 24.422 28.483 hybrid contribution 0.314 -0.428 -0.911 1.054 sum -9.821 10.162 23.511 27.431 Atomic orbital electron populations 1.21708 0.93592 1.01320 1.01983 1.21337 0.95853 0.96898 0.94740 1.21649 1.01320 0.93909 1.00737 1.20597 0.82636 0.95212 0.94609 1.44252 1.02065 1.69597 1.16610 1.19412 0.98243 1.34664 0.86428 0.91596 1.25749 0.99431 1.00179 0.98894 1.70176 1.27224 1.41727 1.18883 0.85394 0.77941 0.79211 0.78211 1.20379 1.22202 1.20236 1.20951 0.96911 0.93868 0.86382 1.22261 0.95025 1.01544 0.97986 1.20721 0.93466 0.95743 0.83097 0.92238 1.45937 1.64101 1.15095 1.09022 1.17063 0.77125 0.85198 0.82269 1.90801 1.52721 1.16555 1.85092 1.21668 1.11633 0.91933 0.96404 1.25736 0.95805 0.95278 0.87870 1.84431 1.63259 1.19121 1.41033 1.26848 0.98290 0.90134 0.84984 1.19943 0.93520 0.85381 1.03858 1.22090 0.93349 0.95333 1.07625 1.23154 1.03563 1.01722 0.93713 1.23102 1.02042 0.98587 0.95683 1.70738 1.15661 1.14449 1.19740 0.91494 0.92310 0.93746 0.92880 0.93506 0.91874 0.91712 0.99275 0.94121 0.92215 0.97429 0.91110 0.92136 0.74990 0.72993 0.85741 0.86327 0.88622 0.87932 0.89169 0.87957 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 8.31 71.98 0.60 -3.56 16 2 C -0.09 -3.19 0.56 -52.10 -0.03 -3.22 16 3 C -0.12 -4.08 7.83 71.98 0.56 -3.52 16 4 C 0.20 9.45 3.98 86.36 0.34 9.79 16 5 N -0.60 -30.37 2.43 -699.11 -1.70 -32.07 16 6 C -0.26 -14.06 9.58 84.03 0.81 -13.25 16 7 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 8 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 9 N -0.93 -55.19 11.20 21.65 0.24 -54.95 16 10 Si 0.96 44.76 29.59 68.60 2.03 46.78 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 C 0.15 6.37 6.52 86.36 0.56 6.93 16 15 C -0.13 -4.76 5.31 30.67 0.16 -4.60 16 16 C 0.17 6.28 1.57 45.02 0.07 6.35 16 17 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 18 N -0.69 -21.21 4.29 -445.66 -1.91 -23.12 16 19 C 0.60 18.78 7.78 86.66 0.67 19.46 16 20 O -0.57 -21.22 16.55 -4.06 -0.07 -21.29 16 21 C -0.10 -2.49 6.99 40.41 0.28 -2.21 16 22 C 0.03 0.54 11.95 67.32 0.80 1.34 16 23 O -0.19 -3.40 10.73 0.34 0.00 -3.40 16 24 C 0.21 3.65 7.51 88.39 0.66 4.31 16 25 C 0.01 0.10 6.12 29.85 0.18 0.28 16 26 C -0.16 -1.70 5.72 -10.80 -0.06 -1.76 16 27 C -0.18 -1.91 10.18 30.59 0.31 -1.60 16 28 C -0.16 -1.09 10.25 30.59 0.31 -0.77 16 29 N -0.48 -11.05 11.06 -293.03 -3.24 -14.29 16 30 H 0.07 1.87 7.36 -2.38 -0.02 1.85 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 2.02 5.97 -2.38 -0.01 2.01 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.76 6.58 -2.39 -0.02 1.74 16 36 H 0.06 3.50 6.06 -2.39 -0.01 3.48 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.07 2.56 6.33 -2.39 -0.02 2.54 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.41 11.46 6.39 -92.71 -0.59 10.86 16 44 H 0.25 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.12 0.98 7.87 -2.39 -0.02 0.96 16 47 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 48 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 49 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 51 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -69.07 406.08 2.37 -66.69 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.35 Total: 23.86 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.67 Total: 11.78 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.61 Total: -124.43 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.07 2.37 -66.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941136136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds