Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52137 * 2 1 4 4 C 1.53623 * 109.63239 * 239.91184 * 2 1 3 5 5 N 1.46920 * 108.54659 * 294.86593 * 4 2 1 6 6 C 1.36940 * 120.63171 * 126.36599 * 5 4 2 7 7 H 1.08001 * 120.00074 * 332.13974 * 6 5 4 8 8 C 1.38810 * 119.99568 * 152.13511 * 6 5 4 9 9 N 1.31612 * 120.00342 * 334.89674 * 8 6 5 10 10 Si 1.86802 * 119.99639 * 154.90100 * 8 6 5 11 11 H 1.48502 * 109.47243 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47133 * 119.99630 * 10 8 6 13 13 H 1.48491 * 109.47174 * 239.99763 * 10 8 6 14 14 C 1.46928 * 118.73725 * 306.09435 * 5 4 2 15 15 C 1.53194 * 108.77571 * 53.86205 * 14 5 4 16 16 C 1.53036 * 109.49653 * 120.07899 * 2 1 3 17 17 H 1.08999 * 109.46125 * 178.60461 * 16 2 1 18 18 N 1.46500 * 109.46169 * 298.56383 * 16 2 1 19 19 C 1.34782 * 120.00252 * 205.06642 * 18 16 2 20 20 O 1.21610 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.47418 * 119.99914 * 179.97438 * 19 18 16 22 22 C 1.36094 * 126.44786 * 180.02562 * 21 19 18 23 23 O 1.34253 * 106.95079 * 179.97438 * 22 21 19 24 24 C 1.34054 * 108.22869 * 0.02562 * 23 22 21 25 25 C 1.50691 * 125.38083 * 180.02562 * 24 23 22 26 26 C 1.53777 * 113.61651 * 37.46912 * 25 24 23 27 27 C 1.53780 * 87.08704 * 220.02044 * 26 25 24 28 28 C 1.53788 * 113.61156 * 299.97492 * 25 24 23 29 29 N 1.29936 * 109.23863 * 359.74715 * 24 23 22 30 30 H 1.09002 * 109.46977 * 299.91919 * 1 2 3 31 31 H 1.08994 * 109.46971 * 59.92039 * 1 2 3 32 32 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47099 * 180.08451 * 3 2 1 34 34 H 1.08999 * 109.47332 * 300.07880 * 3 2 1 35 35 H 1.08997 * 109.47571 * 60.08001 * 3 2 1 36 36 H 1.09002 * 109.73702 * 175.12578 * 4 2 1 37 37 H 1.09006 * 109.66406 * 54.56302 * 4 2 1 38 38 H 0.97002 * 120.00390 * 354.25820 * 9 8 6 39 39 H 1.09002 * 109.58709 * 173.64297 * 14 5 4 40 40 H 1.08999 * 109.58653 * 293.93015 * 14 5 4 41 41 H 1.08998 * 109.49916 * 65.31580 * 15 14 5 42 42 H 1.08993 * 109.49821 * 185.38145 * 15 14 5 43 43 H 0.97001 * 120.00097 * 25.07140 * 18 16 2 44 44 H 1.07998 * 126.52322 * 0.02562 * 22 21 19 45 45 H 1.08994 * 112.85266 * 168.78200 * 25 24 23 46 46 H 1.08997 * 113.61408 * 334.57363 * 26 25 24 47 47 H 1.09002 * 113.61127 * 105.47196 * 26 25 24 48 48 H 1.08999 * 113.61440 * 270.88850 * 27 26 25 49 49 H 1.08997 * 113.69254 * 139.98976 * 27 26 25 50 50 H 1.08999 * 113.61618 * 254.52479 * 28 25 24 51 51 H 1.08998 * 113.61860 * 25.34965 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0462 -0.7254 -1.2520 5 7 1.6515 -2.1382 -1.1695 6 6 0.9639 -2.7315 -2.1944 7 1 0.3270 -2.1371 -2.8327 8 6 1.0854 -4.0969 -2.4128 9 7 2.1667 -4.7333 -2.0152 10 14 -0.2856 -5.0311 -3.2712 11 1 -1.3835 -4.0926 -3.6163 12 1 0.2411 -5.6536 -4.5123 13 1 -0.8042 -6.0897 -2.3681 14 6 2.0140 -2.9040 0.0309 15 6 1.5030 -2.1557 1.2661 16 6 2.0408 -0.7230 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5811 -0.0143 2.4453 19 6 2.2705 -0.1215 3.5984 20 8 3.2745 -0.8063 3.6452 21 6 1.8082 0.5921 4.8027 22 6 2.3998 0.5774 6.0283 23 8 1.6573 1.3567 6.8306 24 6 0.6319 1.8394 6.1146 25 6 -0.4410 2.7592 6.6376 26 6 0.0781 3.8050 7.6384 27 6 -1.2096 3.5599 8.4425 28 6 -1.2503 2.1626 7.8014 29 7 0.7127 1.3935 4.8968 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9558 0.8906 36 1 3.1327 -0.6516 -1.2985 37 1 1.6089 -0.2752 -2.1432 38 1 2.9134 -4.2367 -1.6453 39 1 1.5554 -3.8918 -0.0136 40 1 3.0978 -3.0064 0.0855 41 1 0.4133 -2.1355 1.2542 42 1 1.8475 -2.6630 2.1671 43 1 0.7805 0.5321 2.4079 44 1 3.2963 0.0415 6.3028 45 1 -1.0605 3.1803 5.8459 46 1 0.9842 3.4976 8.1605 47 1 0.1485 4.8101 7.2224 48 1 -2.0391 4.2012 8.1447 49 1 -1.0553 3.5409 9.5213 50 1 -2.2525 1.8418 7.5170 51 1 -0.7080 1.4051 8.3672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941147180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = 19.255215 kcal Electronic energy + Delta-G solvation = -31387.113500 eV Core-core repulsion = 27289.101688 eV Total energy + Delta-G solvation = -4098.011811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.69954 -40.00738 -39.11790 -38.13587 -35.10246 -34.83404 -33.12170 -31.40777 -30.94049 -29.74736 -26.92572 -26.60506 -26.20759 -25.94464 -25.26056 -23.83199 -22.29096 -21.85005 -20.75523 -20.51176 -19.71738 -18.61639 -17.75878 -17.35756 -17.04592 -16.76973 -16.10177 -15.82856 -15.55812 -14.74969 -14.46403 -14.31091 -14.05934 -13.78334 -13.66590 -13.53081 -13.42255 -13.31546 -13.08573 -12.93789 -12.74494 -12.34083 -11.96262 -11.61981 -11.54354 -11.49091 -11.28545 -11.08221 -11.03217 -10.99559 -10.93612 -10.88025 -10.73175 -10.55161 -10.31311 -10.10094 -10.04842 -9.93138 -9.79878 -9.26170 -9.23209 -8.67915 -8.31560 -6.85142 -6.03239 -3.19393 0.91525 1.78886 2.27210 3.17297 3.31970 3.52872 3.55631 3.58812 3.68797 3.97787 4.06683 4.28760 4.36055 4.61347 4.62091 4.74835 5.03632 5.07088 5.14824 5.17867 5.18359 5.31154 5.32230 5.38487 5.39450 5.40729 5.41410 5.52221 5.54089 5.76195 5.81025 5.84206 5.87835 5.93729 6.02521 6.12094 6.22685 6.27401 6.35818 6.44127 6.50597 6.57552 6.72424 6.74838 6.83865 6.91783 7.12000 7.21676 7.25448 7.70880 8.04221 8.29123 8.60890 9.14623 9.87977 10.32594 11.25335 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.002308 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.334533 B =12127.542416 C =12271.900929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.162 3.838 5 N -0.596 5.596 6 C -0.346 4.346 7 H 0.057 0.943 8 C -0.025 4.025 9 N -0.917 5.917 10 Si 1.067 2.933 11 H -0.292 1.292 12 H -0.295 1.295 13 H -0.291 1.291 14 C 0.153 3.847 15 C -0.145 4.145 16 C 0.163 3.837 17 H 0.082 0.918 18 N -0.700 5.700 19 C 0.596 3.404 20 O -0.538 6.538 21 C -0.065 4.065 22 C 0.007 3.993 23 O -0.195 6.195 24 C 0.206 3.794 25 C -0.020 4.020 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.458 5.458 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.060 0.940 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.404 0.596 44 H 0.231 0.769 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 18.233 20.572 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.195 4.195 4 C 0.035 3.965 5 N -0.319 5.319 6 C -0.475 4.475 7 H 0.074 0.926 8 C -0.227 4.227 9 N -0.557 5.557 10 Si 0.898 3.102 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.027 3.973 15 C -0.185 4.185 16 C 0.060 3.940 17 H 0.100 0.900 18 N -0.350 5.350 19 C 0.380 3.620 20 O -0.416 6.416 21 C -0.186 4.186 22 C -0.067 4.067 23 O -0.081 6.081 24 C -0.003 4.003 25 C -0.039 4.039 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 N -0.188 5.188 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.241 0.759 44 H 0.247 0.753 45 H 0.151 0.849 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.456 16.361 19.580 26.093 hybrid contribution 0.743 1.564 0.901 1.952 sum -4.712 17.925 20.481 27.622 Atomic orbital electron populations 1.21777 0.94233 1.03086 0.99721 1.21419 0.96634 0.94627 0.96370 1.21810 1.00764 0.95829 1.01119 1.20994 0.95902 0.85975 0.93653 1.44138 1.65680 1.06119 1.15938 1.19983 1.22448 0.94398 1.10721 0.92554 1.25811 1.01122 0.95336 1.00441 1.70709 1.03538 1.39663 1.41769 0.83500 0.75180 0.75523 0.76028 1.21867 1.22198 1.21740 1.20926 0.96571 0.95966 0.83854 1.22514 1.01226 0.94734 1.00013 1.21049 0.99269 0.91669 0.82044 0.89990 1.46132 1.29410 1.49747 1.09728 1.16769 0.83198 0.80286 0.81712 1.90832 1.25471 1.40829 1.84436 1.21964 0.96001 1.04035 0.96567 1.25297 0.97679 0.94939 0.88779 1.84328 1.32697 1.49697 1.41410 1.26052 0.90453 0.98566 0.85247 1.21318 0.91565 0.93342 0.97688 1.23025 0.98787 0.98794 0.96468 1.22820 0.97883 0.96654 1.00306 1.23029 1.00704 0.97714 0.95450 1.70773 1.18147 1.11303 1.18568 0.94512 0.93042 0.90629 0.93000 0.92619 0.93259 0.96405 0.92158 0.91889 0.89948 0.96335 0.91735 0.92690 0.75922 0.75286 0.84901 0.89207 0.90236 0.89408 0.90573 0.90110 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.84 37.16 0.29 -1.87 16 2 C -0.09 -1.50 0.56 -154.17 -0.09 -1.59 16 3 C -0.14 -1.98 8.31 37.16 0.31 -1.67 16 4 C 0.16 3.36 5.24 -3.49 -0.02 3.34 16 5 N -0.60 -14.62 2.28 -172.05 -0.39 -15.02 16 6 C -0.35 -9.49 9.49 -15.06 -0.14 -9.63 16 7 H 0.06 1.55 7.94 -52.49 -0.42 1.14 16 8 C -0.03 -0.71 4.68 -17.43 -0.08 -0.79 16 9 N -0.92 -27.57 12.40 55.49 0.69 -26.88 16 10 Si 1.07 25.40 29.99 -169.99 -5.10 20.30 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.15 3.66 4.69 -3.71 -0.02 3.64 16 15 C -0.14 -2.91 5.31 -26.61 -0.14 -3.05 16 16 C 0.16 2.92 1.57 -67.89 -0.11 2.82 16 17 H 0.08 1.63 7.57 -51.93 -0.39 1.23 16 18 N -0.70 -11.07 4.28 -54.84 -0.23 -11.31 16 19 C 0.60 9.75 7.78 -12.52 -0.10 9.65 16 20 O -0.54 -10.26 16.55 5.27 0.09 -10.17 16 21 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 22 C 0.01 0.07 11.95 29.96 0.36 0.43 16 23 O -0.20 -2.00 10.39 6.51 0.07 -1.93 16 24 C 0.21 2.12 7.33 -13.08 -0.10 2.03 16 25 C -0.02 -0.14 4.29 -90.96 -0.39 -0.53 16 26 C -0.13 -0.68 7.62 -25.92 -0.20 -0.87 16 27 C -0.14 -0.56 8.08 -25.92 -0.21 -0.77 16 28 C -0.13 -0.71 7.63 -25.91 -0.20 -0.91 16 29 N -0.46 -5.88 11.06 -7.66 -0.08 -5.97 16 30 H 0.04 0.52 6.58 -51.93 -0.34 0.18 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.46 5.97 -51.93 -0.31 1.15 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.27 8.22 6.71 -40.82 -0.27 7.94 16 39 H 0.08 2.20 6.29 -51.93 -0.33 1.88 16 40 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 41 H 0.06 1.30 6.33 -51.93 -0.33 0.97 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.40 5.91 6.39 -40.82 -0.26 5.64 16 44 H 0.23 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.50 7.81 -51.93 -0.41 0.09 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -32.36 399.98 -8.47 -40.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.13 Total: 5.36 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.41 Total: -1.24 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.02 Total: -59.17 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.15 Total: -12.10 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.36 -8.47 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941147180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.091 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds