Wall clock time and date at job start Wed Apr 1 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52137 * 2 1 4 4 C 1.53623 * 109.63239 * 239.91184 * 2 1 3 5 5 N 1.46920 * 108.54659 * 294.86593 * 4 2 1 6 6 C 1.36940 * 120.63171 * 126.36599 * 5 4 2 7 7 H 1.08001 * 120.00074 * 332.13974 * 6 5 4 8 8 C 1.38810 * 119.99568 * 152.13511 * 6 5 4 9 9 N 1.31612 * 120.00342 * 334.89674 * 8 6 5 10 10 Si 1.86802 * 119.99639 * 154.90100 * 8 6 5 11 11 H 1.48502 * 109.47243 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47133 * 119.99630 * 10 8 6 13 13 H 1.48491 * 109.47174 * 239.99763 * 10 8 6 14 14 C 1.46928 * 118.73725 * 306.09435 * 5 4 2 15 15 C 1.53194 * 108.77571 * 53.86205 * 14 5 4 16 16 C 1.53036 * 109.49653 * 120.07899 * 2 1 3 17 17 H 1.08999 * 109.46125 * 178.60461 * 16 2 1 18 18 N 1.46500 * 109.46169 * 298.56383 * 16 2 1 19 19 C 1.34782 * 120.00252 * 205.06642 * 18 16 2 20 20 O 1.21610 * 119.99770 * 0.02562 * 19 18 16 21 21 C 1.47418 * 119.99914 * 179.97438 * 19 18 16 22 22 C 1.36094 * 126.44786 * 180.02562 * 21 19 18 23 23 O 1.34253 * 106.95079 * 179.97438 * 22 21 19 24 24 C 1.34054 * 108.22869 * 0.02562 * 23 22 21 25 25 C 1.50691 * 125.38083 * 180.02562 * 24 23 22 26 26 C 1.53777 * 113.61651 * 37.46912 * 25 24 23 27 27 C 1.53780 * 87.08704 * 220.02044 * 26 25 24 28 28 C 1.53788 * 113.61156 * 299.97492 * 25 24 23 29 29 N 1.29936 * 109.23863 * 359.74715 * 24 23 22 30 30 H 1.09002 * 109.46977 * 299.91919 * 1 2 3 31 31 H 1.08994 * 109.46971 * 59.92039 * 1 2 3 32 32 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47099 * 180.08451 * 3 2 1 34 34 H 1.08999 * 109.47332 * 300.07880 * 3 2 1 35 35 H 1.08997 * 109.47571 * 60.08001 * 3 2 1 36 36 H 1.09002 * 109.73702 * 175.12578 * 4 2 1 37 37 H 1.09006 * 109.66406 * 54.56302 * 4 2 1 38 38 H 0.97002 * 120.00390 * 354.25820 * 9 8 6 39 39 H 1.09002 * 109.58709 * 173.64297 * 14 5 4 40 40 H 1.08999 * 109.58653 * 293.93015 * 14 5 4 41 41 H 1.08998 * 109.49916 * 65.31580 * 15 14 5 42 42 H 1.08993 * 109.49821 * 185.38145 * 15 14 5 43 43 H 0.97001 * 120.00097 * 25.07140 * 18 16 2 44 44 H 1.07998 * 126.52322 * 0.02562 * 22 21 19 45 45 H 1.08994 * 112.85266 * 168.78200 * 25 24 23 46 46 H 1.08997 * 113.61408 * 334.57363 * 26 25 24 47 47 H 1.09002 * 113.61127 * 105.47196 * 26 25 24 48 48 H 1.08999 * 113.61440 * 270.88850 * 27 26 25 49 49 H 1.08997 * 113.69254 * 139.98976 * 27 26 25 50 50 H 1.08999 * 113.61618 * 254.52479 * 28 25 24 51 51 H 1.08998 * 113.61860 * 25.34965 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0462 -0.7254 -1.2520 5 7 1.6515 -2.1382 -1.1695 6 6 0.9639 -2.7315 -2.1944 7 1 0.3270 -2.1371 -2.8327 8 6 1.0854 -4.0969 -2.4128 9 7 2.1667 -4.7333 -2.0152 10 14 -0.2856 -5.0311 -3.2712 11 1 -1.3835 -4.0926 -3.6163 12 1 0.2411 -5.6536 -4.5123 13 1 -0.8042 -6.0897 -2.3681 14 6 2.0140 -2.9040 0.0309 15 6 1.5030 -2.1557 1.2661 16 6 2.0408 -0.7230 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5811 -0.0143 2.4453 19 6 2.2705 -0.1215 3.5984 20 8 3.2745 -0.8063 3.6452 21 6 1.8082 0.5921 4.8027 22 6 2.3998 0.5774 6.0283 23 8 1.6573 1.3567 6.8306 24 6 0.6319 1.8394 6.1146 25 6 -0.4410 2.7592 6.6376 26 6 0.0781 3.8050 7.6384 27 6 -1.2096 3.5599 8.4425 28 6 -1.2503 2.1626 7.8014 29 7 0.7127 1.3935 4.8968 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9558 0.8906 36 1 3.1327 -0.6516 -1.2985 37 1 1.6089 -0.2752 -2.1432 38 1 2.9134 -4.2367 -1.6453 39 1 1.5554 -3.8918 -0.0136 40 1 3.0978 -3.0064 0.0855 41 1 0.4133 -2.1355 1.2542 42 1 1.8475 -2.6630 2.1671 43 1 0.7805 0.5321 2.4079 44 1 3.2963 0.0415 6.3028 45 1 -1.0605 3.1803 5.8459 46 1 0.9842 3.4976 8.1605 47 1 0.1485 4.8101 7.2224 48 1 -2.0391 4.2012 8.1447 49 1 -1.0553 3.5409 9.5213 50 1 -2.2525 1.8418 7.5170 51 1 -0.7080 1.4051 8.3672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941147180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:03 Heat of formation + Delta-G solvation = -1.712383 kcal Electronic energy + Delta-G solvation = -31388.022723 eV Core-core repulsion = 27289.101688 eV Total energy + Delta-G solvation = -4098.921035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.56552 -41.44391 -39.74172 -39.45492 -36.66697 -36.01176 -34.60121 -33.23144 -32.00611 -31.39352 -28.25371 -27.55762 -27.22225 -26.94991 -26.58802 -25.27174 -23.74040 -22.65906 -22.43308 -21.73884 -20.56318 -19.70485 -19.45856 -18.88903 -17.91159 -17.75802 -17.25475 -16.64941 -16.28105 -16.23875 -16.07068 -15.91735 -15.55369 -15.33814 -15.28138 -14.96317 -14.76971 -14.30067 -13.97446 -13.76891 -13.58888 -13.53709 -13.34433 -12.95829 -12.82799 -12.71921 -12.59436 -12.49206 -12.44496 -12.34305 -11.97892 -11.94966 -11.88677 -11.82450 -11.65577 -11.50783 -11.45344 -11.42176 -11.35439 -11.12256 -10.46102 -10.24402 -9.98217 -8.93613 -8.23751 -5.38365 -0.01353 0.85398 1.46767 1.58657 1.66469 1.82067 1.96631 2.13812 2.65854 2.73525 3.22057 3.46343 3.53871 3.55970 3.61696 3.64942 3.77468 3.82022 3.91704 3.92513 4.03364 4.21620 4.29296 4.40691 4.45576 4.50236 4.53091 4.67930 4.71858 4.72641 4.78749 4.79204 4.84082 4.86888 4.91945 4.95349 5.00379 5.05053 5.08295 5.11021 5.12169 5.14096 5.17373 5.25848 5.29957 5.38740 5.50490 5.56988 5.86562 6.23659 6.38812 6.53128 7.01573 7.04155 7.77513 8.23096 9.01788 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.002308 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.334533 B =12127.542416 C =12271.900929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.130 4.130 4 C 0.158 3.842 5 N -0.608 5.608 6 C -0.344 4.344 7 H 0.057 0.943 8 C -0.080 4.080 9 N -0.946 5.946 10 Si 1.117 2.883 11 H -0.270 1.270 12 H -0.293 1.293 13 H -0.291 1.291 14 C 0.163 3.837 15 C -0.130 4.130 16 C 0.175 3.825 17 H 0.062 0.938 18 N -0.691 5.691 19 C 0.597 3.403 20 O -0.572 6.572 21 C -0.097 4.097 22 C 0.026 3.974 23 O -0.190 6.190 24 C 0.215 3.785 25 C -0.028 4.028 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.131 4.131 29 N -0.481 5.481 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.011 0.989 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.048 0.952 40 H -0.002 1.002 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.413 0.587 44 H 0.254 0.746 45 H 0.143 0.857 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 20.968 22.106 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.187 4.187 4 C 0.032 3.968 5 N -0.332 5.332 6 C -0.473 4.473 7 H 0.074 0.926 8 C -0.276 4.276 9 N -0.589 5.589 10 Si 0.942 3.058 11 H -0.195 1.195 12 H -0.220 1.220 13 H -0.217 1.217 14 C 0.037 3.963 15 C -0.170 4.170 16 C 0.071 3.929 17 H 0.080 0.920 18 N -0.341 5.341 19 C 0.383 3.617 20 O -0.452 6.452 21 C -0.216 4.216 22 C -0.048 4.048 23 O -0.076 6.076 24 C 0.005 3.995 25 C -0.047 4.047 26 C -0.168 4.168 27 C -0.166 4.166 28 C -0.170 4.170 29 N -0.210 5.210 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.016 0.984 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.251 0.749 44 H 0.270 0.730 45 H 0.160 0.840 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.119 0.881 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.376 19.157 21.123 29.455 hybrid contribution 1.361 0.783 0.498 1.647 sum -6.015 19.940 21.621 30.021 Atomic orbital electron populations 1.21698 0.93268 1.01655 1.01519 1.21258 0.97215 0.95789 0.93669 1.21744 1.00643 0.93614 1.02733 1.21155 0.95595 0.84217 0.95831 1.44300 1.65807 1.07532 1.15575 1.20226 1.21779 0.94619 1.10707 0.92567 1.27166 1.02306 0.96862 1.01258 1.70840 1.04163 1.39585 1.44282 0.82834 0.73205 0.74763 0.74975 1.19478 1.22025 1.21746 1.20672 0.95034 0.95045 0.85570 1.22292 1.01115 0.95957 0.97628 1.20698 0.97960 0.90629 0.83647 0.92002 1.45891 1.29700 1.49532 1.09008 1.17085 0.82548 0.79727 0.82322 1.90812 1.26933 1.42376 1.85057 1.21641 0.97723 1.05914 0.96334 1.25738 0.97544 0.93626 0.87886 1.84379 1.32660 1.49423 1.41092 1.26830 0.90396 0.97693 0.84585 1.21696 0.91058 0.93492 0.98477 1.23034 0.99121 0.98659 0.95950 1.22806 0.97623 0.95571 1.00560 1.23051 1.00556 0.98486 0.94862 1.70728 1.18239 1.12115 1.19958 0.91867 0.92090 0.93603 0.93238 0.90956 0.91650 0.97154 0.91934 0.93731 0.93310 0.98399 0.91481 0.93199 0.74864 0.72995 0.83976 0.89744 0.89242 0.88062 0.89848 0.89588 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 7.84 71.98 0.56 -3.31 16 2 C -0.08 -2.55 0.56 -51.96 -0.03 -2.58 16 3 C -0.13 -3.43 8.31 71.98 0.60 -2.84 16 4 C 0.16 6.59 5.24 86.51 0.45 7.04 16 5 N -0.61 -30.70 2.28 -698.25 -1.59 -32.29 16 6 C -0.34 -19.12 9.49 84.03 0.80 -18.32 16 7 H 0.06 3.09 7.94 -2.91 -0.02 3.07 16 8 C -0.08 -4.61 4.68 84.86 0.40 -4.21 16 9 N -0.95 -59.12 12.40 21.65 0.27 -58.85 16 10 Si 1.12 51.79 29.99 68.60 2.06 53.85 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 14 C 0.16 8.21 4.69 86.36 0.41 8.62 16 15 C -0.13 -5.38 5.31 30.67 0.16 -5.21 16 16 C 0.18 6.29 1.57 45.02 0.07 6.36 16 17 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 18 N -0.69 -21.28 4.28 -445.67 -1.91 -23.19 16 19 C 0.60 19.28 7.78 86.66 0.67 19.95 16 20 O -0.57 -22.01 16.55 -4.06 -0.07 -22.08 16 21 C -0.10 -2.57 6.99 40.41 0.28 -2.29 16 22 C 0.03 0.54 11.95 67.32 0.80 1.34 16 23 O -0.19 -3.50 10.39 0.38 0.00 -3.50 16 24 C 0.21 4.01 7.33 88.39 0.65 4.65 16 25 C -0.03 -0.31 4.29 -11.02 -0.05 -0.36 16 26 C -0.13 -0.97 7.62 31.12 0.24 -0.73 16 27 C -0.13 -0.64 8.08 31.12 0.25 -0.39 16 28 C -0.13 -1.12 7.63 31.13 0.24 -0.88 16 29 N -0.48 -11.56 11.06 -293.04 -3.24 -14.80 16 30 H 0.06 1.63 6.58 -2.39 -0.02 1.62 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.72 5.97 -2.39 -0.01 1.71 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.55 7.36 -2.39 -0.02 1.53 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 38 H 0.25 16.24 6.71 -92.71 -0.62 15.61 16 39 H 0.05 2.76 6.29 -2.39 -0.02 2.74 16 40 H 0.00 -0.10 7.86 -2.39 -0.02 -0.12 16 41 H 0.07 2.74 6.33 -2.39 -0.02 2.73 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.41 11.31 6.39 -92.71 -0.59 10.71 16 44 H 0.25 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.14 1.31 8.14 -2.39 -0.02 1.30 16 46 H 0.08 0.74 7.81 -2.39 -0.02 0.72 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 Total: -1.00 -72.54 399.98 2.52 -70.02 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.49 Total: 24.00 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.51 Total: 6.84 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -6.47 Total: -129.14 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Total: -72.54 2.52 -70.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941147180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.308 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds