Wall clock time and date at job start Wed Apr 1 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.52364 * 2 1 4 4 C 1.53191 * 109.49835 * 239.91981 * 2 1 3 5 5 N 1.46919 * 108.77497 * 185.41307 * 4 2 1 6 6 C 1.36945 * 120.63079 * 233.58306 * 5 4 2 7 7 H 1.07998 * 119.99610 * 151.84635 * 6 5 4 8 8 C 1.38810 * 119.99672 * 331.85278 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.05554 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.06609 * 8 6 5 11 11 H 1.48503 * 109.47207 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47577 * 119.99583 * 10 8 6 13 13 H 1.48506 * 109.46740 * 239.99563 * 10 8 6 14 14 C 1.46927 * 118.73979 * 53.60590 * 5 4 2 15 15 C 1.53185 * 108.77786 * 306.39360 * 14 5 4 16 16 C 1.53036 * 109.31229 * 54.63140 * 15 14 5 17 17 H 1.08998 * 109.46163 * 58.65969 * 16 15 14 18 18 N 1.46498 * 109.45730 * 178.63012 * 16 15 14 19 19 C 1.34777 * 120.00514 * 275.02735 * 18 16 15 20 20 O 1.21617 * 119.99632 * 0.02562 * 19 18 16 21 21 C 1.47420 * 120.00594 * 179.97438 * 19 18 16 22 22 C 1.36086 * 126.44754 * 179.68787 * 21 19 18 23 23 O 1.34257 * 106.94953 * 179.84681 * 22 21 19 24 24 C 1.34052 * 108.22550 * 0.42324 * 23 22 21 25 25 C 1.50699 * 125.37981 * 179.69996 * 24 23 22 26 26 C 1.53779 * 113.61774 * 39.17729 * 25 24 23 27 27 C 1.53953 * 87.02001 * 220.05090 * 26 25 24 28 28 C 1.53782 * 87.11330 * 25.36235 * 27 26 25 29 29 N 1.29936 * 109.24282 * 359.73292 * 24 23 22 30 30 H 1.09004 * 109.47028 * 299.91720 * 1 2 3 31 31 H 1.09001 * 109.47447 * 59.92037 * 1 2 3 32 32 H 1.08997 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47378 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46983 * 300.08378 * 3 2 1 35 35 H 1.09000 * 109.47392 * 60.08058 * 3 2 1 36 36 H 1.08997 * 109.58926 * 65.62315 * 4 2 1 37 37 H 1.08998 * 109.69934 * 305.26941 * 4 2 1 38 38 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.58359 * 186.60060 * 14 5 4 40 40 H 1.09005 * 109.70084 * 66.25166 * 14 5 4 41 41 H 1.09005 * 109.49318 * 294.68345 * 15 14 5 42 42 H 1.08999 * 109.52236 * 174.60654 * 15 14 5 43 43 H 0.97008 * 120.00101 * 95.03275 * 18 16 15 44 44 H 1.08000 * 126.53142 * 0.02562 * 22 21 19 45 45 H 1.09003 * 112.84938 * 170.37958 * 25 24 23 46 46 H 1.09008 * 113.61047 * 334.56900 * 26 25 24 47 47 H 1.08997 * 113.61412 * 105.46840 * 26 25 24 48 48 H 1.09000 * 113.53505 * 270.81055 * 27 26 25 49 49 H 1.08999 * 113.74309 * 139.94283 * 27 26 25 50 50 H 1.08999 * 113.61162 * 220.09077 * 28 27 26 51 51 H 1.08998 * 113.69115 * 89.20077 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1945 7 1 5.2961 -0.0326 -1.9920 8 6 3.8046 -0.3688 -3.4936 9 7 2.7414 -1.0806 -3.8023 10 14 4.6557 0.6552 -4.8037 11 1 5.8186 1.3581 -4.2046 12 1 5.1234 -0.2317 -5.8990 13 1 3.7013 1.6539 -5.3487 14 6 4.1053 -1.4266 0.0308 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6967 -1.7572 1.2353 18 7 1.5266 -0.0526 2.4451 19 6 1.3977 -0.7378 3.5986 20 8 1.7088 -1.9125 3.6460 21 6 0.8808 -0.0630 4.8030 22 6 0.6925 -0.6264 6.0274 23 8 0.2130 0.3359 6.8315 24 6 0.0999 1.4632 6.1150 25 6 -0.4076 2.7823 6.6380 26 6 0.0659 3.1023 8.0656 27 6 -1.3492 3.6498 8.3261 28 6 -1.8338 2.7109 7.2088 29 7 0.4964 1.2388 4.8981 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7638 -0.1580 -2.1389 37 1 1.6054 -1.7215 -1.3005 38 1 2.3995 -1.0730 -4.7101 39 1 5.1896 -1.3245 -0.0138 40 1 3.8397 -2.4823 0.0880 41 1 3.9159 0.3389 1.2540 42 1 3.9335 -1.1891 2.1673 43 1 1.2787 0.8845 2.4074 44 1 0.8936 -1.6516 6.3011 45 1 -0.2593 3.6018 5.9347 46 1 0.3069 2.2171 8.6544 47 1 0.8444 3.8641 8.1069 48 1 -1.4578 4.7074 8.0855 49 1 -1.7433 3.3970 9.3104 50 1 -2.5869 3.1573 6.5594 51 1 -2.1138 1.7183 7.5615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941147181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:07 Heat of formation + Delta-G solvation = 21.398640 kcal Electronic energy + Delta-G solvation = -31386.582448 eV Core-core repulsion = 27288.663582 eV Total energy + Delta-G solvation = -4097.918865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.66866 -39.90832 -39.07882 -38.00267 -35.06257 -34.53682 -32.75718 -31.96841 -30.93199 -29.36379 -26.71968 -26.56199 -26.18921 -25.92609 -25.46434 -23.82945 -22.22686 -21.79668 -20.65838 -20.49838 -19.67184 -18.55700 -17.71875 -17.02024 -16.95974 -16.54151 -16.02281 -15.76759 -15.44496 -14.85613 -14.64691 -14.24412 -13.90751 -13.73156 -13.56994 -13.32366 -13.27376 -13.13072 -13.06848 -12.91708 -12.65083 -12.28088 -11.59349 -11.53500 -11.49513 -11.45547 -11.26827 -11.05842 -11.02290 -11.00476 -10.97266 -10.85709 -10.65735 -10.56254 -10.20696 -10.07993 -10.03248 -9.90741 -9.63155 -9.40585 -9.20025 -8.62621 -8.42875 -6.64513 -5.77321 -3.19230 0.94545 1.82472 2.30106 3.23262 3.36307 3.37969 3.46242 3.48159 3.62796 3.99708 4.08933 4.30729 4.38910 4.50971 4.64971 4.79621 5.09357 5.16930 5.20087 5.23525 5.31585 5.33965 5.40565 5.42638 5.43252 5.44698 5.54443 5.59005 5.63157 5.82402 5.88722 5.91318 6.00660 6.13567 6.15936 6.25636 6.35992 6.45113 6.50476 6.52156 6.69880 6.74546 6.85714 6.95732 7.01691 7.08400 7.26690 7.35143 7.64669 7.77826 7.83192 8.34725 8.46887 9.23017 9.86274 10.43500 11.31351 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.002307 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.727014 B =12134.641561 C =12664.178619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.186 3.814 5 N -0.590 5.590 6 C -0.248 4.248 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.082 0.918 18 N -0.699 5.699 19 C 0.595 3.405 20 O -0.541 6.541 21 C -0.065 4.065 22 C 0.005 3.995 23 O -0.196 6.196 24 C 0.205 3.795 25 C -0.020 4.020 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.458 5.458 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.405 0.595 44 H 0.231 0.769 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 8.530 23.905 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.185 4.185 4 C 0.060 3.940 5 N -0.312 5.312 6 C -0.378 4.378 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.021 3.979 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.349 5.349 19 C 0.380 3.620 20 O -0.418 6.418 21 C -0.185 4.185 22 C -0.068 4.068 23 O -0.082 6.082 24 C -0.004 4.004 25 C -0.039 4.039 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 N -0.187 5.187 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.241 0.759 44 H 0.247 0.753 45 H 0.151 0.849 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.145 8.119 23.248 26.268 hybrid contribution 0.284 0.282 -0.310 0.506 sum -8.861 8.401 22.937 25.985 Atomic orbital electron populations 1.21770 0.95386 1.01305 1.00795 1.21559 0.94501 0.96859 0.96923 1.21749 1.02556 0.94672 0.99502 1.20824 0.83090 0.96792 0.93312 1.44058 1.01666 1.69222 1.16207 1.19195 0.97905 1.34995 0.85658 0.91674 1.25031 0.98536 0.99062 0.96977 1.70034 1.25692 1.40278 1.18658 0.86267 0.78934 0.79976 0.81867 1.20292 1.21802 1.21613 1.20871 0.96652 0.94277 0.86143 1.22455 0.94656 1.01706 0.99488 1.21088 0.93952 0.96801 0.82262 0.89956 1.46179 1.64043 1.14933 1.09711 1.16778 0.77962 0.85567 0.81737 1.90822 1.51310 1.15197 1.84511 1.21994 1.08955 0.90918 0.96632 1.25286 0.98298 0.94465 0.88788 1.84325 1.63619 1.18987 1.41254 1.26052 0.99767 0.89225 0.85321 1.21317 0.97219 0.87850 0.97510 1.23057 0.97980 1.02072 0.93981 1.22848 0.95814 0.99677 0.99318 1.23022 0.94771 1.01155 0.97946 1.70785 1.14518 1.14863 1.18553 0.93751 0.92536 0.93092 0.91115 0.92896 0.95021 0.88883 0.96203 0.93708 0.92558 0.96207 0.91766 0.92771 0.75891 0.75319 0.84891 0.89233 0.90197 0.89423 0.90591 0.90138 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.31 37.16 0.31 -1.92 16 2 C -0.10 -1.78 0.56 -154.39 -0.09 -1.87 16 3 C -0.13 -2.26 7.83 37.16 0.29 -1.97 16 4 C 0.19 4.34 3.98 -3.71 -0.01 4.33 16 5 N -0.59 -14.50 2.43 -172.33 -0.42 -14.92 16 6 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 9 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 10 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 15 C -0.14 -2.68 5.31 -26.62 -0.14 -2.82 16 16 C 0.16 2.94 1.57 -67.89 -0.11 2.83 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -11.19 4.28 -54.85 -0.23 -11.42 16 19 C 0.60 9.72 7.78 -12.52 -0.10 9.62 16 20 O -0.54 -10.17 16.55 5.26 0.09 -10.09 16 21 C -0.06 -0.89 6.99 -83.02 -0.58 -1.47 16 22 C 0.01 0.06 11.94 29.96 0.36 0.42 16 23 O -0.20 -2.01 10.43 6.51 0.07 -1.94 16 24 C 0.21 2.14 7.32 -13.08 -0.10 2.04 16 25 C -0.02 -0.14 4.28 -90.96 -0.39 -0.53 16 26 C -0.13 -0.70 7.64 -25.83 -0.20 -0.90 16 27 C -0.14 -0.57 8.09 -25.83 -0.21 -0.78 16 28 C -0.13 -0.71 7.63 -25.92 -0.20 -0.90 16 29 N -0.46 -5.94 11.06 -7.66 -0.08 -6.02 16 30 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 34 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.03 0.48 6.58 -51.93 -0.34 0.14 16 36 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.20 6.33 -51.93 -0.33 0.87 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.40 6.07 6.39 -40.82 -0.26 5.81 16 44 H 0.23 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.51 7.85 -51.92 -0.41 0.10 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 401.07 15.07 6.04 6.04 Total: -1.00 -31.35 401.07 -8.55 -39.91 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.19 Total: 4.78 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.41 Total: 2.40 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.12 Total: -57.63 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.15 Total: -12.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.35 -8.55 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941147181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.306 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds