Wall clock time and date at job start Wed Apr 1 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.52364 * 2 1 4 4 C 1.53191 * 109.49835 * 239.91981 * 2 1 3 5 5 N 1.46919 * 108.77497 * 185.41307 * 4 2 1 6 6 C 1.36945 * 120.63079 * 233.58306 * 5 4 2 7 7 H 1.07998 * 119.99610 * 151.84635 * 6 5 4 8 8 C 1.38810 * 119.99672 * 331.85278 * 6 5 4 9 9 N 1.31617 * 120.00186 * 343.05554 * 8 6 5 10 10 Si 1.86800 * 119.99802 * 163.06609 * 8 6 5 11 11 H 1.48503 * 109.47207 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47577 * 119.99583 * 10 8 6 13 13 H 1.48506 * 109.46740 * 239.99563 * 10 8 6 14 14 C 1.46927 * 118.73979 * 53.60590 * 5 4 2 15 15 C 1.53185 * 108.77786 * 306.39360 * 14 5 4 16 16 C 1.53036 * 109.31229 * 54.63140 * 15 14 5 17 17 H 1.08998 * 109.46163 * 58.65969 * 16 15 14 18 18 N 1.46498 * 109.45730 * 178.63012 * 16 15 14 19 19 C 1.34777 * 120.00514 * 275.02735 * 18 16 15 20 20 O 1.21617 * 119.99632 * 0.02562 * 19 18 16 21 21 C 1.47420 * 120.00594 * 179.97438 * 19 18 16 22 22 C 1.36086 * 126.44754 * 179.68787 * 21 19 18 23 23 O 1.34257 * 106.94953 * 179.84681 * 22 21 19 24 24 C 1.34052 * 108.22550 * 0.42324 * 23 22 21 25 25 C 1.50699 * 125.37981 * 179.69996 * 24 23 22 26 26 C 1.53779 * 113.61774 * 39.17729 * 25 24 23 27 27 C 1.53953 * 87.02001 * 220.05090 * 26 25 24 28 28 C 1.53782 * 87.11330 * 25.36235 * 27 26 25 29 29 N 1.29936 * 109.24282 * 359.73292 * 24 23 22 30 30 H 1.09004 * 109.47028 * 299.91720 * 1 2 3 31 31 H 1.09001 * 109.47447 * 59.92037 * 1 2 3 32 32 H 1.08997 * 109.46825 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47378 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46983 * 300.08378 * 3 2 1 35 35 H 1.09000 * 109.47392 * 60.08058 * 3 2 1 36 36 H 1.08997 * 109.58926 * 65.62315 * 4 2 1 37 37 H 1.08998 * 109.69934 * 305.26941 * 4 2 1 38 38 H 0.97005 * 119.99776 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.58359 * 186.60060 * 14 5 4 40 40 H 1.09005 * 109.70084 * 66.25166 * 14 5 4 41 41 H 1.09005 * 109.49318 * 294.68345 * 15 14 5 42 42 H 1.08999 * 109.52236 * 174.60654 * 15 14 5 43 43 H 0.97008 * 120.00101 * 95.03275 * 18 16 15 44 44 H 1.08000 * 126.53142 * 0.02562 * 22 21 19 45 45 H 1.09003 * 112.84938 * 170.37958 * 25 24 23 46 46 H 1.09008 * 113.61047 * 334.56900 * 26 25 24 47 47 H 1.08997 * 113.61412 * 105.46840 * 26 25 24 48 48 H 1.09000 * 113.53505 * 270.81055 * 27 26 25 49 49 H 1.08999 * 113.74309 * 139.94283 * 27 26 25 50 50 H 1.08999 * 113.61162 * 220.09077 * 28 27 26 51 51 H 1.08998 * 113.69115 * 89.20077 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1945 7 1 5.2961 -0.0326 -1.9920 8 6 3.8046 -0.3688 -3.4936 9 7 2.7414 -1.0806 -3.8023 10 14 4.6557 0.6552 -4.8037 11 1 5.8186 1.3581 -4.2046 12 1 5.1234 -0.2317 -5.8990 13 1 3.7013 1.6539 -5.3487 14 6 4.1053 -1.4266 0.0308 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6967 -1.7572 1.2353 18 7 1.5266 -0.0526 2.4451 19 6 1.3977 -0.7378 3.5986 20 8 1.7088 -1.9125 3.6460 21 6 0.8808 -0.0630 4.8030 22 6 0.6925 -0.6264 6.0274 23 8 0.2130 0.3359 6.8315 24 6 0.0999 1.4632 6.1150 25 6 -0.4076 2.7823 6.6380 26 6 0.0659 3.1023 8.0656 27 6 -1.3492 3.6498 8.3261 28 6 -1.8338 2.7109 7.2088 29 7 0.4964 1.2388 4.8981 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7638 -0.1580 -2.1389 37 1 1.6054 -1.7215 -1.3005 38 1 2.3995 -1.0730 -4.7101 39 1 5.1896 -1.3245 -0.0138 40 1 3.8397 -2.4823 0.0880 41 1 3.9159 0.3389 1.2540 42 1 3.9335 -1.1891 2.1673 43 1 1.2787 0.8845 2.4074 44 1 0.8936 -1.6516 6.3011 45 1 -0.2593 3.6018 5.9347 46 1 0.3069 2.2171 8.6544 47 1 0.8444 3.8641 8.1069 48 1 -1.4578 4.7074 8.0855 49 1 -1.7433 3.3970 9.3104 50 1 -2.5869 3.1573 6.5594 51 1 -2.1138 1.7183 7.5615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941147181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:06 Heat of formation + Delta-G solvation = 1.540096 kcal Electronic energy + Delta-G solvation = -31387.443579 eV Core-core repulsion = 27288.663582 eV Total energy + Delta-G solvation = -4098.779996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.52976 -41.34207 -39.64876 -39.39113 -36.31777 -35.95448 -34.26112 -33.82579 -31.87313 -31.07577 -28.18387 -27.63147 -27.34877 -26.94216 -26.57465 -25.22460 -23.66516 -22.61668 -22.31026 -21.67751 -20.51773 -19.69079 -19.15019 -18.52233 -17.87634 -17.68530 -17.10227 -16.77777 -16.60513 -16.16607 -15.99994 -15.73017 -15.46099 -15.25443 -14.94972 -14.83841 -14.68650 -14.30438 -13.88014 -13.74614 -13.52252 -13.32627 -13.27463 -13.08701 -12.91677 -12.74915 -12.65203 -12.44555 -12.40008 -12.33529 -11.95970 -11.93260 -11.88179 -11.84296 -11.68928 -11.44099 -11.40486 -11.35863 -11.31199 -11.07716 -10.53873 -10.18009 -9.92208 -8.67557 -7.85889 -5.31010 0.02903 0.89330 1.46723 1.49218 1.50513 1.59287 2.03718 2.19062 2.52161 2.77761 3.29339 3.55672 3.57523 3.65201 3.66752 3.72898 3.81172 3.93057 3.94709 4.05643 4.08131 4.31728 4.42331 4.44410 4.54596 4.57394 4.63470 4.73779 4.76769 4.80340 4.83205 4.88251 4.92614 4.94451 4.98644 5.01441 5.06499 5.07475 5.12725 5.15438 5.22447 5.28864 5.31188 5.40298 5.48461 5.52017 5.60331 5.68677 5.73488 6.29240 6.40682 6.58358 7.07442 7.16024 7.85297 8.38900 9.21082 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.002307 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.727014 B =12134.641561 C =12664.178619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.119 4.119 4 C 0.196 3.804 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.145 3.855 15 C -0.128 4.128 16 C 0.174 3.826 17 H 0.060 0.940 18 N -0.692 5.692 19 C 0.597 3.403 20 O -0.571 6.571 21 C -0.097 4.097 22 C 0.026 3.974 23 O -0.190 6.190 24 C 0.214 3.786 25 C -0.029 4.029 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.130 4.130 29 N -0.482 5.482 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.064 0.936 37 H -0.011 1.011 38 H 0.250 0.750 39 H 0.059 0.941 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.412 0.588 44 H 0.255 0.745 45 H 0.141 0.859 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 10.653 26.314 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.177 4.177 4 C 0.070 3.930 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.019 3.981 15 C -0.168 4.168 16 C 0.070 3.930 17 H 0.078 0.922 18 N -0.342 5.342 19 C 0.384 3.616 20 O -0.451 6.451 21 C -0.216 4.216 22 C -0.048 4.048 23 O -0.076 6.076 24 C 0.004 3.996 25 C -0.048 4.048 26 C -0.169 4.169 27 C -0.166 4.166 28 C -0.168 4.168 29 N -0.211 5.211 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.007 0.993 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.250 0.750 44 H 0.271 0.729 45 H 0.159 0.841 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.102 0.898 50 H 0.105 0.895 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.663 10.268 25.685 29.301 hybrid contribution 0.437 -0.426 -0.969 1.145 sum -9.226 9.843 24.717 28.159 Atomic orbital electron populations 1.21712 0.93578 1.01349 1.01990 1.21339 0.95873 0.96906 0.94730 1.21653 1.01341 0.93909 1.00751 1.20592 0.82623 0.95219 0.94583 1.44269 1.02083 1.69597 1.16603 1.19478 0.98182 1.34416 0.86401 0.91584 1.25750 0.99442 1.00248 0.98902 1.70188 1.27242 1.41821 1.18790 0.85262 0.78155 0.78278 0.79080 1.19130 1.22245 1.21568 1.20951 0.96916 0.93880 0.86362 1.22261 0.95027 1.01543 0.98000 1.20724 0.93468 0.95763 0.83077 0.92197 1.45942 1.64094 1.15089 1.09040 1.17055 0.77140 0.85201 0.82250 1.90802 1.52673 1.16539 1.85090 1.21679 1.11597 0.91872 0.96457 1.25746 0.95948 0.95259 0.87846 1.84376 1.63330 1.18954 1.40939 1.26802 0.98101 0.90012 0.84671 1.21685 0.98370 0.86268 0.98444 1.23070 0.99057 1.02183 0.92551 1.22833 0.94502 1.00031 0.99206 1.23039 0.93929 1.01377 0.98453 1.70739 1.15903 1.14535 1.19951 0.91500 0.92291 0.93710 0.92852 0.93449 0.91909 0.91719 0.99254 0.94129 0.92203 0.97390 0.91127 0.92156 0.75011 0.72895 0.84141 0.89720 0.89401 0.88165 0.89801 0.89532 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.31 71.98 0.60 -3.58 16 2 C -0.09 -3.21 0.56 -52.10 -0.03 -3.23 16 3 C -0.12 -4.11 7.83 71.98 0.56 -3.54 16 4 C 0.20 9.48 3.98 86.36 0.34 9.82 16 5 N -0.60 -30.41 2.43 -699.12 -1.70 -32.11 16 6 C -0.25 -13.92 9.58 84.03 0.81 -13.11 16 7 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 8 C -0.05 -2.67 4.92 84.86 0.42 -2.26 16 9 N -0.93 -55.23 11.20 21.65 0.24 -54.99 16 10 Si 0.96 44.84 29.59 68.60 2.03 46.87 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.15 6.38 6.52 86.36 0.56 6.94 16 15 C -0.13 -4.79 5.31 30.67 0.16 -4.62 16 16 C 0.17 6.30 1.57 45.02 0.07 6.37 16 17 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.69 -21.42 4.28 -445.68 -1.91 -23.33 16 19 C 0.60 19.00 7.78 86.66 0.67 19.67 16 20 O -0.57 -21.32 16.55 -4.09 -0.07 -21.39 16 21 C -0.10 -2.54 6.99 40.41 0.28 -2.26 16 22 C 0.03 0.53 11.94 67.32 0.80 1.33 16 23 O -0.19 -3.47 10.43 0.36 0.00 -3.47 16 24 C 0.21 4.01 7.32 88.39 0.65 4.66 16 25 C -0.03 -0.32 4.28 -11.01 -0.05 -0.37 16 26 C -0.13 -1.03 7.64 31.18 0.24 -0.79 16 27 C -0.13 -0.66 8.09 31.18 0.25 -0.41 16 28 C -0.13 -1.08 7.63 31.12 0.24 -0.84 16 29 N -0.48 -11.67 11.06 -293.04 -3.24 -14.91 16 30 H 0.07 1.87 7.36 -2.38 -0.02 1.85 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 2.03 5.97 -2.39 -0.01 2.02 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.76 6.58 -2.39 -0.02 1.74 16 36 H 0.06 3.50 6.06 -2.39 -0.01 3.48 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 39 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 40 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.07 2.56 6.33 -2.38 -0.02 2.55 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 43 H 0.41 11.59 6.39 -92.70 -0.59 11.00 16 44 H 0.26 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 0.77 7.85 -2.38 -0.02 0.75 16 47 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 Total: -1.00 -68.99 401.07 2.29 -66.70 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.35 Total: 22.85 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.58 Total: 13.77 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.61 Total: -125.34 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.99 2.29 -66.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941147181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.244 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds