Wall clock time and date at job start Wed Apr 1 2020 04:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34856 * 119.09986 * 2 1 4 4 C 1.41668 * 119.34023 * 179.78709 * 3 2 1 5 5 O 1.22083 * 121.07086 * 180.22196 * 4 3 2 6 6 C 1.47098 * 117.86278 * 0.45305 * 4 3 2 7 7 C 1.47287 * 120.88468 * 179.80745 * 6 4 3 8 8 O 1.21619 * 120.00084 * 312.27219 * 7 6 4 9 9 N 1.34773 * 120.00160 * 132.26803 * 7 6 4 10 10 C 1.46502 * 119.99904 * 4.54449 * 9 7 6 11 11 C 1.46501 * 120.00109 * 184.54469 * 9 7 6 12 12 H 1.08998 * 110.21399 * 0.02562 * 11 9 7 13 13 C 1.50128 * 110.25118 * 121.93700 * 11 9 7 14 14 C 1.54631 * 110.93058 * 216.54787 * 13 11 9 15 15 C 1.54906 * 110.18826 * 321.33207 * 14 13 11 16 16 N 1.43436 * 116.07592 * 318.53184 * 15 14 13 17 17 C 1.36935 * 120.53546 * 271.58609 * 16 15 14 18 18 H 1.08002 * 120.00031 * 327.95563 * 17 16 15 19 19 C 1.38809 * 119.99946 * 147.96072 * 17 16 15 20 20 N 1.31618 * 120.00003 * 1.38207 * 19 17 16 21 21 Si 1.86804 * 120.00062 * 181.38003 * 19 17 16 22 22 H 1.48503 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47262 * 120.00243 * 21 19 17 24 24 H 1.48506 * 109.47140 * 240.00235 * 21 19 17 25 25 C 1.50166 * 118.92497 * 91.56760 * 16 15 14 26 26 C 1.46239 * 107.53537 * 289.58465 * 25 16 15 27 27 C 1.37984 * 118.23610 * 359.79379 * 6 4 3 28 28 N 1.34350 * 120.37226 * 359.97438 * 27 6 4 29 29 C 1.46497 * 118.80882 * 180.02562 * 28 27 6 30 30 H 1.09004 * 109.47265 * 269.72257 * 1 2 3 31 31 H 1.09002 * 109.47518 * 29.72588 * 1 2 3 32 32 H 1.09004 * 109.47357 * 149.72840 * 1 2 3 33 33 H 1.08003 * 120.33134 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47099 * 92.81164 * 10 9 7 35 35 H 1.09000 * 109.47195 * 212.80777 * 10 9 7 36 36 H 1.08996 * 109.47222 * 332.80611 * 10 9 7 37 37 H 1.09002 * 109.20473 * 336.99541 * 13 11 9 38 38 H 1.08996 * 109.21233 * 96.30832 * 13 11 9 39 39 H 1.08997 * 109.42829 * 201.06035 * 14 13 11 40 40 H 1.09006 * 109.13641 * 81.42219 * 14 13 11 41 41 H 1.08991 * 108.16139 * 196.81361 * 15 14 13 42 42 H 1.09001 * 108.15913 * 80.24540 * 15 14 13 43 43 H 0.96999 * 119.99727 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.84467 * 170.08260 * 25 16 15 45 45 H 1.09002 * 109.90382 * 49.12878 * 25 16 15 46 46 H 1.09001 * 108.52183 * 297.17574 * 26 25 16 47 47 H 1.08997 * 108.52404 * 179.65156 * 26 25 16 48 48 H 1.08007 * 119.81557 * 179.97438 * 27 6 4 49 49 H 1.09006 * 109.47368 * 269.98442 * 29 28 27 50 50 H 1.09004 * 109.46980 * 29.97829 * 29 28 27 51 51 H 1.08996 * 109.47732 * 149.97950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5795 1.1843 0.0046 5 8 4.2052 2.2326 0.0088 6 6 4.2725 -0.1132 -0.0011 7 6 5.7436 -0.1847 -0.0011 8 8 6.3856 0.4970 -0.7772 9 7 6.3784 -1.0054 0.8591 10 6 5.6051 -1.8992 1.7247 11 6 7.8418 -1.0036 0.9286 12 1 8.2515 -0.2829 0.2209 13 6 8.2955 -0.6783 2.3222 14 6 9.5768 0.1870 2.2982 15 6 10.5207 -0.2869 1.1650 16 7 10.6453 -1.7063 1.0005 17 6 11.5891 -2.4078 1.7022 18 1 12.5297 -1.9419 1.9567 19 6 11.3371 -3.7177 2.0862 20 7 10.2021 -4.2945 1.7524 21 14 12.6088 -4.6619 3.0765 22 1 13.7899 -3.7953 3.3198 23 1 12.0192 -5.0722 4.3762 24 1 13.0286 -5.8691 2.3203 25 6 9.7238 -2.4106 0.0468 26 6 8.3858 -2.3984 0.6369 27 6 3.5077 -1.2617 -0.0062 28 7 2.1664 -1.1847 -0.0054 29 6 1.3880 -2.4257 -0.0103 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3634 0.8924 -0.5096 32 1 -0.3634 -0.8876 -0.5181 33 1 1.6136 2.1083 0.0004 34 1 5.4912 -2.8677 1.2377 35 1 6.1272 -2.0285 2.6727 36 1 4.6215 -1.4666 1.9077 37 1 7.5046 -0.1347 2.8390 38 1 8.5017 -1.6050 2.8577 39 1 10.0903 0.1010 3.2557 40 1 9.3018 1.2279 2.1277 41 1 11.5130 0.1213 1.3565 42 1 10.1617 0.1337 0.2257 43 1 10.0261 -5.2099 2.0205 44 1 10.0554 -3.4391 -0.0968 45 1 9.7109 -1.8891 -0.9102 46 1 8.4137 -2.9612 1.5700 47 1 7.7014 -2.9012 -0.0464 48 1 3.9900 -2.2281 -0.0108 49 1 1.1943 -2.7291 -1.0392 50 1 1.9493 -3.2087 0.4997 51 1 0.4413 -2.2630 0.5048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948459216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:25 Heat of formation + Delta-G solvation = 10.835708 kcal Electronic energy + Delta-G solvation = -32210.078929 eV Core-core repulsion = 28111.702021 eV Total energy + Delta-G solvation = -4098.376908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45971 -39.59354 -38.05564 -37.26542 -35.07864 -33.80432 -33.04493 -32.38287 -31.02218 -30.45178 -28.45588 -27.21456 -26.80768 -25.98173 -24.50025 -23.58873 -23.01205 -21.93681 -20.25206 -19.54439 -18.48024 -17.98929 -17.42846 -16.66371 -16.59959 -16.32681 -15.89870 -15.46121 -15.00198 -14.64078 -14.41837 -13.99387 -13.92261 -13.85235 -13.67144 -13.60690 -13.53496 -13.29453 -13.04767 -12.95659 -12.72568 -12.54774 -12.29364 -12.19364 -11.92523 -11.84204 -11.63411 -11.21457 -11.06426 -10.80467 -10.68004 -10.17314 -10.03789 -9.90031 -9.85719 -9.67972 -9.59041 -9.33049 -9.23295 -9.13961 -8.42369 -8.13345 -7.99784 -6.51845 -5.74446 -3.25334 0.82084 1.11702 2.08968 3.03718 3.35964 3.37221 3.45228 3.47714 3.73385 3.81980 4.13262 4.31515 4.45129 4.51763 4.54349 4.68970 4.78942 4.87673 4.95576 5.09319 5.24742 5.27479 5.39497 5.48907 5.51998 5.54966 5.59994 5.75247 5.82694 5.89268 5.98103 6.15585 6.31226 6.35275 6.41750 6.46526 6.56712 6.65997 6.68110 6.76551 7.00260 7.02631 7.04771 7.18564 7.24032 7.38457 7.67502 7.81150 7.89694 8.01715 8.09839 8.55275 8.64278 9.26900 9.90294 10.48016 11.30849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002801 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.913525 B = 9994.794708 C =10880.132074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 C -0.273 4.273 4 C 0.410 3.590 5 O -0.494 6.494 6 C -0.286 4.286 7 C 0.576 3.424 8 O -0.522 6.522 9 N -0.602 5.602 10 C 0.075 3.925 11 C 0.142 3.858 12 H 0.098 0.902 13 C -0.112 4.112 14 C -0.138 4.138 15 C 0.155 3.845 16 N -0.591 5.591 17 C -0.240 4.240 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.165 3.835 26 C -0.125 4.125 27 C 0.162 3.838 28 N -0.474 5.474 29 C 0.050 3.950 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.250 0.750 44 H 0.102 0.898 45 H 0.002 0.998 46 H 0.100 0.900 47 H 0.027 0.973 48 H 0.172 0.828 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.048 -0.012 -1.294 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 C -0.298 4.298 4 C 0.297 3.703 5 O -0.376 6.376 6 C -0.297 4.297 7 C 0.363 3.637 8 O -0.398 6.398 9 N -0.335 5.335 10 C -0.069 4.069 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.150 4.150 14 C -0.180 4.180 15 C 0.026 3.974 16 N -0.312 5.312 17 C -0.370 4.370 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.552 5.552 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.041 3.959 26 C -0.165 4.165 27 C 0.033 3.967 28 N -0.161 5.161 29 C -0.092 4.092 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.120 0.880 45 H 0.020 0.980 46 H 0.118 0.882 47 H 0.045 0.955 48 H 0.189 0.811 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.494 0.564 -1.687 24.558 hybrid contribution 0.385 -0.838 0.825 1.237 sum -24.109 -0.274 -0.862 24.126 Atomic orbital electron populations 1.21164 0.88150 1.04872 1.04196 1.20262 0.94773 0.85067 0.94830 1.22196 0.96177 0.97194 1.14187 1.18156 0.88330 0.87710 0.76081 1.90803 1.70097 1.33439 1.43246 1.22542 0.94872 0.95094 1.17156 1.17500 0.85724 0.79721 0.80751 1.90784 1.66966 1.43068 1.38984 1.47993 1.07668 1.39304 1.38557 1.21852 0.96156 0.93193 0.95658 1.20676 0.76201 1.00551 0.98562 0.88452 1.21699 0.96494 1.00769 0.96034 1.22759 0.96620 0.97091 1.01524 1.20444 0.95997 0.86365 0.94610 1.44122 1.38876 1.02018 1.46201 1.19266 0.94726 0.95651 1.27334 0.91765 1.25174 0.96416 0.98585 0.99064 1.69882 1.23444 1.12903 1.48976 0.86222 0.80921 0.79684 0.79986 1.20437 1.21777 1.21877 1.20201 0.88237 0.99180 0.88262 1.21320 0.97640 0.93518 1.04010 1.22307 0.81825 1.00232 0.92358 1.42556 1.05290 1.07054 1.61227 1.22506 0.97709 0.84551 1.04388 0.89286 0.88887 0.90281 0.83130 0.92826 0.90600 0.91891 0.94263 0.90782 0.92835 0.93639 0.94972 0.95234 0.93957 0.88023 0.97968 0.88161 0.95452 0.81122 0.90092 0.88813 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.34 8.97 36.01 0.32 -0.01 16 2 C 0.16 1.12 6.64 -82.13 -0.54 0.58 16 3 C -0.27 -3.04 9.57 -39.47 -0.38 -3.42 16 4 C 0.41 6.82 6.95 -34.68 -0.24 6.58 16 5 O -0.49 -10.69 17.28 2.16 0.04 -10.66 16 6 C -0.29 -4.36 5.12 -102.72 -0.53 -4.88 16 7 C 0.58 11.13 7.09 -12.58 -0.09 11.04 16 8 O -0.52 -12.56 16.10 2.57 0.04 -12.52 16 9 N -0.60 -10.63 2.63 -177.19 -0.47 -11.10 16 10 C 0.07 0.97 8.38 59.85 0.50 1.47 16 11 C 0.14 2.90 2.30 -69.60 -0.16 2.74 16 12 H 0.10 2.27 5.12 -51.93 -0.27 2.00 16 13 C -0.11 -2.27 4.32 -27.30 -0.12 -2.39 16 14 C -0.14 -2.87 6.40 -24.87 -0.16 -3.03 16 15 C 0.15 3.51 5.17 -4.66 -0.02 3.48 16 16 N -0.59 -14.87 2.60 -175.08 -0.46 -15.32 16 17 C -0.24 -6.47 9.61 -15.06 -0.14 -6.61 16 18 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 19 C 0.00 0.13 5.30 -17.43 -0.09 0.03 16 20 N -0.91 -24.18 8.84 55.49 0.49 -23.69 16 21 Si 0.90 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.16 3.99 5.23 -5.20 -0.03 3.96 16 26 C -0.13 -2.72 4.15 -30.18 -0.13 -2.84 16 27 C 0.16 1.55 7.84 -16.54 -0.13 1.42 16 28 N -0.47 -3.08 2.97 -119.75 -0.36 -3.44 16 29 C 0.05 0.09 9.64 59.85 0.58 0.66 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.21 8.05 -51.93 -0.42 -0.21 16 32 H 0.08 0.06 6.48 -51.93 -0.34 -0.27 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 35 H 0.08 1.03 7.21 -51.93 -0.37 0.66 16 36 H 0.06 0.67 5.63 -51.93 -0.29 0.38 16 37 H 0.04 0.75 7.84 -51.93 -0.41 0.34 16 38 H 0.07 1.65 6.84 -51.93 -0.36 1.29 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.72 8.00 -51.93 -0.42 0.30 16 42 H 0.03 0.66 6.90 -51.93 -0.36 0.30 16 43 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.10 2.69 6.02 -51.92 -0.31 2.38 16 45 H 0.00 0.05 8.13 -51.93 -0.42 -0.37 16 46 H 0.10 2.38 5.27 -51.93 -0.27 2.11 16 47 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 48 H 0.17 1.26 6.37 -52.48 -0.33 0.92 16 49 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 50 H 0.09 0.06 7.96 -51.93 -0.41 -0.35 16 51 H 0.09 -0.01 6.37 -51.93 -0.33 -0.35 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -37.54 388.48 -9.01 -46.55 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.78 Total: -0.72 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.36 Total: 8.79 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.79 Total: -53.55 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.08 Total: -23.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.54 -9.01 -46.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948459216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.383 kcal (2) G-P(sol) polarization free energy of solvation -37.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds