Wall clock time and date at job start Wed Apr 1 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34856 * 119.09986 * 2 1 4 4 C 1.41668 * 119.34023 * 179.78709 * 3 2 1 5 5 O 1.22083 * 121.07086 * 180.22196 * 4 3 2 6 6 C 1.47098 * 117.86278 * 0.45305 * 4 3 2 7 7 C 1.47287 * 120.88468 * 179.80745 * 6 4 3 8 8 O 1.21619 * 120.00084 * 312.27219 * 7 6 4 9 9 N 1.34773 * 120.00160 * 132.26803 * 7 6 4 10 10 C 1.46502 * 119.99904 * 4.54449 * 9 7 6 11 11 C 1.46501 * 120.00109 * 184.54469 * 9 7 6 12 12 H 1.08998 * 110.21399 * 0.02562 * 11 9 7 13 13 C 1.50128 * 110.25118 * 121.93700 * 11 9 7 14 14 C 1.54631 * 110.93058 * 216.54787 * 13 11 9 15 15 C 1.54906 * 110.18826 * 321.33207 * 14 13 11 16 16 N 1.43436 * 116.07592 * 318.53184 * 15 14 13 17 17 C 1.36935 * 120.53546 * 271.58609 * 16 15 14 18 18 H 1.08002 * 120.00031 * 327.95563 * 17 16 15 19 19 C 1.38809 * 119.99946 * 147.96072 * 17 16 15 20 20 N 1.31618 * 120.00003 * 1.38207 * 19 17 16 21 21 Si 1.86804 * 120.00062 * 181.38003 * 19 17 16 22 22 H 1.48503 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47262 * 120.00243 * 21 19 17 24 24 H 1.48506 * 109.47140 * 240.00235 * 21 19 17 25 25 C 1.50166 * 118.92497 * 91.56760 * 16 15 14 26 26 C 1.46239 * 107.53537 * 289.58465 * 25 16 15 27 27 C 1.37984 * 118.23610 * 359.79379 * 6 4 3 28 28 N 1.34350 * 120.37226 * 359.97438 * 27 6 4 29 29 C 1.46497 * 118.80882 * 180.02562 * 28 27 6 30 30 H 1.09004 * 109.47265 * 269.72257 * 1 2 3 31 31 H 1.09002 * 109.47518 * 29.72588 * 1 2 3 32 32 H 1.09004 * 109.47357 * 149.72840 * 1 2 3 33 33 H 1.08003 * 120.33134 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47099 * 92.81164 * 10 9 7 35 35 H 1.09000 * 109.47195 * 212.80777 * 10 9 7 36 36 H 1.08996 * 109.47222 * 332.80611 * 10 9 7 37 37 H 1.09002 * 109.20473 * 336.99541 * 13 11 9 38 38 H 1.08996 * 109.21233 * 96.30832 * 13 11 9 39 39 H 1.08997 * 109.42829 * 201.06035 * 14 13 11 40 40 H 1.09006 * 109.13641 * 81.42219 * 14 13 11 41 41 H 1.08991 * 108.16139 * 196.81361 * 15 14 13 42 42 H 1.09001 * 108.15913 * 80.24540 * 15 14 13 43 43 H 0.96999 * 119.99727 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.84467 * 170.08260 * 25 16 15 45 45 H 1.09002 * 109.90382 * 49.12878 * 25 16 15 46 46 H 1.09001 * 108.52183 * 297.17574 * 26 25 16 47 47 H 1.08997 * 108.52404 * 179.65156 * 26 25 16 48 48 H 1.08007 * 119.81557 * 179.97438 * 27 6 4 49 49 H 1.09006 * 109.47368 * 269.98442 * 29 28 27 50 50 H 1.09004 * 109.46980 * 29.97829 * 29 28 27 51 51 H 1.08996 * 109.47732 * 149.97950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5795 1.1843 0.0046 5 8 4.2052 2.2326 0.0088 6 6 4.2725 -0.1132 -0.0011 7 6 5.7436 -0.1847 -0.0011 8 8 6.3856 0.4970 -0.7772 9 7 6.3784 -1.0054 0.8591 10 6 5.6051 -1.8992 1.7247 11 6 7.8418 -1.0036 0.9286 12 1 8.2515 -0.2829 0.2209 13 6 8.2955 -0.6783 2.3222 14 6 9.5768 0.1870 2.2982 15 6 10.5207 -0.2869 1.1650 16 7 10.6453 -1.7063 1.0005 17 6 11.5891 -2.4078 1.7022 18 1 12.5297 -1.9419 1.9567 19 6 11.3371 -3.7177 2.0862 20 7 10.2021 -4.2945 1.7524 21 14 12.6088 -4.6619 3.0765 22 1 13.7899 -3.7953 3.3198 23 1 12.0192 -5.0722 4.3762 24 1 13.0286 -5.8691 2.3203 25 6 9.7238 -2.4106 0.0468 26 6 8.3858 -2.3984 0.6369 27 6 3.5077 -1.2617 -0.0062 28 7 2.1664 -1.1847 -0.0054 29 6 1.3880 -2.4257 -0.0103 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3634 0.8924 -0.5096 32 1 -0.3634 -0.8876 -0.5181 33 1 1.6136 2.1083 0.0004 34 1 5.4912 -2.8677 1.2377 35 1 6.1272 -2.0285 2.6727 36 1 4.6215 -1.4666 1.9077 37 1 7.5046 -0.1347 2.8390 38 1 8.5017 -1.6050 2.8577 39 1 10.0903 0.1010 3.2557 40 1 9.3018 1.2279 2.1277 41 1 11.5130 0.1213 1.3565 42 1 10.1617 0.1337 0.2257 43 1 10.0261 -5.2099 2.0205 44 1 10.0554 -3.4391 -0.0968 45 1 9.7109 -1.8891 -0.9102 46 1 8.4137 -2.9612 1.5700 47 1 7.7014 -2.9012 -0.0464 48 1 3.9900 -2.2281 -0.0108 49 1 1.1943 -2.7291 -1.0392 50 1 1.9493 -3.2087 0.4997 51 1 0.4413 -2.2630 0.5048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948459216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:24 Heat of formation + Delta-G solvation = -14.223182 kcal Electronic energy + Delta-G solvation = -32211.165564 eV Core-core repulsion = 28111.702021 eV Total energy + Delta-G solvation = -4099.463543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.32532 -41.00213 -39.37712 -38.78507 -36.68325 -34.91721 -34.18178 -33.65399 -32.68731 -32.29588 -29.20516 -28.10624 -27.81798 -27.59378 -25.81677 -24.95979 -24.78901 -22.95850 -21.66305 -21.17955 -20.08666 -18.99252 -18.62690 -18.34004 -17.59149 -17.34467 -16.93856 -16.78393 -16.58298 -16.02171 -15.70932 -15.46295 -15.39544 -15.27563 -14.93768 -14.72645 -14.41489 -14.38313 -13.96044 -13.86836 -13.80325 -13.57053 -13.47535 -13.34885 -13.21222 -13.12514 -12.94808 -12.67495 -12.60037 -12.52603 -12.47826 -12.01175 -11.83619 -11.77724 -11.63906 -11.22505 -11.10515 -11.05356 -10.48340 -10.39818 -10.34661 -9.58172 -9.04677 -8.52063 -7.78183 -5.32609 -0.10557 0.29948 1.44803 1.49292 1.52271 1.60952 1.68952 2.06921 2.54928 2.65590 3.27017 3.34772 3.48117 3.61285 3.62062 3.83520 3.90602 4.10627 4.14762 4.17507 4.26609 4.38309 4.41134 4.52009 4.53201 4.55160 4.64221 4.70572 4.71546 4.74019 4.78877 4.85437 4.88204 4.89368 4.91423 5.06901 5.14811 5.17792 5.20642 5.26809 5.30709 5.38856 5.48166 5.66553 5.71496 5.73843 5.76658 5.81320 6.10676 6.48356 6.51851 7.04129 7.22270 7.23738 7.88656 8.45678 9.25255 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002801 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.913525 B = 9994.794708 C =10880.132074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.192 3.808 3 C -0.306 4.306 4 C 0.386 3.614 5 O -0.583 6.583 6 C -0.342 4.342 7 C 0.571 3.429 8 O -0.589 6.589 9 N -0.602 5.602 10 C 0.069 3.931 11 C 0.152 3.848 12 H 0.064 0.936 13 C -0.099 4.099 14 C -0.134 4.134 15 C 0.154 3.846 16 N -0.602 5.602 17 C -0.263 4.263 18 H 0.057 0.943 19 C -0.031 4.031 20 N -0.914 5.914 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.168 3.832 26 C -0.106 4.106 27 C 0.211 3.789 28 N -0.456 5.456 29 C 0.032 3.968 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.251 0.749 44 H 0.080 0.920 45 H -0.003 1.003 46 H 0.086 0.914 47 H 0.037 0.963 48 H 0.205 0.795 49 H 0.102 0.898 50 H 0.115 0.885 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.341 -3.350 -0.213 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 C -0.329 4.329 4 C 0.281 3.719 5 O -0.474 6.474 6 C -0.353 4.353 7 C 0.361 3.639 8 O -0.470 6.470 9 N -0.333 5.333 10 C -0.073 4.073 11 C 0.049 3.951 12 H 0.082 0.918 13 C -0.137 4.137 14 C -0.175 4.175 15 C 0.026 3.974 16 N -0.324 5.324 17 C -0.393 4.393 18 H 0.074 0.926 19 C -0.228 4.228 20 N -0.560 5.560 21 Si 0.792 3.208 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.044 3.956 26 C -0.145 4.145 27 C 0.077 3.923 28 N -0.139 5.139 29 C -0.106 4.106 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.015 0.985 46 H 0.104 0.896 47 H 0.055 0.945 48 H 0.221 0.779 49 H 0.120 0.880 50 H 0.134 0.866 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.881 -2.847 -0.580 29.027 hybrid contribution 1.530 -0.001 0.446 1.594 sum -27.351 -2.848 -0.134 27.499 Atomic orbital electron populations 1.21400 0.83680 1.06885 1.06247 1.20889 0.97120 0.83816 0.89834 1.22059 0.93587 0.99628 1.17645 1.18925 0.90576 0.87303 0.75130 1.90744 1.71896 1.35767 1.48952 1.22068 0.92803 0.96694 1.23706 1.18167 0.87534 0.78513 0.79673 1.90726 1.68819 1.45642 1.41773 1.47998 1.06590 1.39887 1.38833 1.22165 0.96638 0.93673 0.94806 1.20257 0.78453 0.98761 0.97607 0.91780 1.21545 0.96522 0.99889 0.95794 1.22676 0.96440 0.97737 1.00629 1.20462 0.96450 0.85356 0.95118 1.44204 1.39038 1.02725 1.46451 1.19388 0.95089 0.96439 1.28425 0.92577 1.25755 0.98255 0.99108 0.99646 1.70007 1.24247 1.12927 1.48789 0.85283 0.78905 0.78172 0.78430 1.20366 1.21554 1.21842 1.20103 0.89536 0.97656 0.88295 1.21008 0.96457 0.94017 1.03023 1.22579 0.82973 0.99384 0.87352 1.43207 1.04661 1.09098 1.56918 1.23112 0.98617 0.82197 1.06700 0.86833 0.88267 0.86978 0.82589 0.89861 0.91135 0.89231 0.93113 0.92337 0.92605 0.92590 0.94997 0.95878 0.93959 0.90189 0.98514 0.89570 0.94457 0.77871 0.87978 0.86647 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.09 8.97 71.24 0.64 0.73 16 2 C 0.19 1.97 6.64 41.20 0.27 2.25 16 3 C -0.31 -6.71 9.57 22.34 0.21 -6.50 16 4 C 0.39 13.72 6.95 25.44 0.18 13.90 16 5 O -0.58 -28.25 17.28 -3.02 -0.05 -28.30 16 6 C -0.34 -10.56 5.12 -18.63 -0.10 -10.66 16 7 C 0.57 23.18 7.09 86.62 0.61 23.79 16 8 O -0.59 -30.85 16.10 -1.52 -0.02 -30.88 16 9 N -0.60 -21.48 2.63 -832.74 -2.19 -23.68 16 10 C 0.07 1.63 8.38 127.77 1.07 2.70 16 11 C 0.15 6.46 2.30 43.91 0.10 6.56 16 12 H 0.06 3.19 5.12 -2.39 -0.01 3.18 16 13 C -0.10 -4.11 4.32 30.22 0.13 -3.98 16 14 C -0.13 -5.69 6.40 31.80 0.20 -5.49 16 15 C 0.15 7.29 5.17 87.60 0.45 7.75 16 16 N -0.60 -31.29 2.60 -707.83 -1.84 -33.13 16 17 C -0.26 -14.48 9.61 84.03 0.81 -13.68 16 18 H 0.06 3.12 7.83 -2.91 -0.02 3.09 16 19 C -0.03 -1.67 5.30 84.86 0.45 -1.22 16 20 N -0.91 -48.81 8.84 21.65 0.19 -48.62 16 21 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 C 0.17 8.40 5.23 83.58 0.44 8.84 16 26 C -0.11 -4.66 4.15 28.36 0.12 -4.54 16 27 C 0.21 3.33 7.84 84.25 0.66 3.99 16 28 N -0.46 -3.55 2.97 -532.77 -1.58 -5.13 16 29 C 0.03 -0.13 9.64 127.77 1.23 1.10 16 30 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 31 H 0.10 -0.03 8.05 -2.39 -0.02 -0.05 16 32 H 0.11 -0.71 6.48 -2.38 -0.02 -0.72 16 33 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.08 1.49 7.54 -2.39 -0.02 1.48 16 35 H 0.07 1.79 7.21 -2.39 -0.02 1.77 16 36 H 0.09 1.63 5.63 -2.39 -0.01 1.61 16 37 H 0.05 1.96 7.84 -2.39 -0.02 1.94 16 38 H 0.06 2.62 6.84 -2.39 -0.02 2.61 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.03 1.48 8.00 -2.39 -0.02 1.46 16 42 H 0.02 1.10 6.90 -2.39 -0.02 1.08 16 43 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 44 H 0.08 4.35 6.02 -2.38 -0.01 4.34 16 45 H 0.00 -0.16 8.13 -2.39 -0.02 -0.18 16 46 H 0.09 4.11 5.27 -2.39 -0.01 4.10 16 47 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 48 H 0.20 1.92 6.37 -2.91 -0.02 1.90 16 49 H 0.10 -0.62 8.14 -2.38 -0.02 -0.64 16 50 H 0.12 -0.77 7.96 -2.38 -0.02 -0.79 16 51 H 0.13 -1.13 6.37 -2.39 -0.02 -1.14 16 Total: -1.00 -94.15 388.48 4.96 -89.20 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.94 Total: 9.24 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 7.49 Total: 25.53 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -5.42 Total: -110.56 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -0.08 Total: -59.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -94.15 4.96 -89.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948459216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.972 kcal (2) G-P(sol) polarization free energy of solvation -94.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds