Wall clock time and date at job start Wed Apr 1 2020 04:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30009 * 127.33547 * 2 1 4 4 O 1.20657 * 112.30595 * 180.26905 * 3 2 1 5 5 C 1.33498 * 113.15136 * 359.73290 * 4 3 2 6 6 C 1.50700 * 126.82805 * 180.02562 * 5 4 3 7 7 C 1.53005 * 117.49614 * 8.61706 * 6 5 4 8 8 C 1.52996 * 117.49532 * 299.99777 * 6 5 4 9 9 C 1.37356 * 106.34048 * 359.97438 * 5 4 3 10 10 C 1.47402 * 128.56307 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99915 * 90.00301 * 10 9 5 12 12 N 1.34774 * 119.99896 * 270.00307 * 10 9 5 13 13 C 1.46491 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.46504 * 119.99813 * 179.97438 * 12 10 9 15 15 H 1.09003 * 108.44831 * 2.30976 * 14 12 10 16 16 C 1.52569 * 108.51229 * 244.76500 * 14 12 10 17 17 C 1.50885 * 109.35617 * 153.73372 * 16 14 12 18 18 C 1.54298 * 110.23623 * 91.79895 * 17 16 14 19 19 N 1.47607 * 111.94165 * 319.70194 * 18 17 16 20 20 C 1.36941 * 118.64546 * 137.77510 * 19 18 17 21 21 H 1.07997 * 120.00134 * 206.35094 * 20 19 18 22 22 C 1.38812 * 119.99902 * 26.34725 * 20 19 18 23 23 N 1.31619 * 119.99800 * 15.83232 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 195.83308 * 22 20 19 25 25 H 1.48500 * 109.46967 * 60.00242 * 24 22 20 26 26 H 1.48499 * 109.46832 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47147 * 300.00214 * 24 22 20 28 28 C 1.44580 * 122.71378 * 317.49660 * 19 18 17 29 29 C 1.47097 * 108.51245 * 119.99848 * 14 12 10 30 30 H 1.08996 * 109.47961 * 270.15192 * 1 2 3 31 31 H 1.09003 * 109.47364 * 30.15423 * 1 2 3 32 32 H 1.09002 * 109.47030 * 150.15415 * 1 2 3 33 33 H 1.08994 * 115.55105 * 154.32621 * 6 5 4 34 34 H 1.08991 * 117.50199 * 0.02562 * 7 6 5 35 35 H 1.09001 * 117.49325 * 145.02579 * 7 6 5 36 36 H 1.09008 * 117.50194 * 214.97858 * 8 6 5 37 37 H 1.09004 * 117.50249 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47509 * 270.00258 * 13 12 10 39 39 H 1.09000 * 109.47588 * 30.00053 * 13 12 10 40 40 H 1.09007 * 109.47475 * 150.00098 * 13 12 10 41 41 H 1.08995 * 109.49007 * 273.70015 * 16 14 12 42 42 H 1.09002 * 109.49226 * 33.74917 * 16 14 12 43 43 H 1.08999 * 109.36789 * 212.07547 * 17 16 14 44 44 H 1.08999 * 109.36906 * 331.82386 * 17 16 14 45 45 H 1.08993 * 109.13988 * 199.01134 * 18 17 16 46 46 H 1.09005 * 108.95754 * 80.26244 * 18 17 16 47 47 H 0.97006 * 120.00107 * 179.97438 * 23 22 20 48 48 H 1.08993 * 109.45327 * 211.02699 * 28 19 18 49 49 H 1.09007 * 109.44578 * 330.97382 * 28 19 18 50 50 H 1.09000 * 109.32580 * 63.79195 * 29 14 12 51 51 H 1.09000 * 109.32688 * 304.31941 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0052 5 6 3.6494 -0.6008 -0.0040 6 6 4.9711 -1.3246 -0.0088 7 6 6.2362 -0.4866 0.1875 8 6 5.9113 -1.0706 -1.1888 9 6 2.3991 -1.1696 0.0037 10 6 2.0400 -2.5992 0.0076 11 8 1.8977 -3.1875 1.0623 12 7 1.8695 -3.2543 -1.1578 13 6 2.0403 -2.5454 -2.4284 14 6 1.5131 -4.6753 -1.1539 15 1 1.3947 -4.9984 -0.1196 16 6 2.6611 -5.4643 -1.7763 17 6 2.6521 -6.8723 -1.2339 18 6 1.8163 -7.7914 -2.1491 19 7 0.5913 -7.1236 -2.6309 20 6 0.2272 -7.2857 -3.9411 21 1 -0.3642 -6.5288 -4.4348 22 6 0.6184 -8.4227 -4.6345 23 7 1.0588 -9.4750 -3.9779 24 14 0.5200 -8.4594 -6.4996 25 1 1.3761 -7.3841 -7.0617 26 1 0.9915 -9.7778 -6.9943 27 1 -0.8865 -8.2457 -6.9253 28 6 -0.2434 -6.3102 -1.7753 29 6 0.2238 -4.8354 -1.8437 30 1 -0.3635 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 4.9597 -2.3271 0.4189 34 1 6.1124 0.5881 0.3206 35 1 7.0572 -0.9378 0.7446 36 1 6.5188 -1.9059 -1.5373 37 1 5.5736 -0.3803 -1.9619 38 1 1.0860 -2.1196 -2.7381 39 1 2.7711 -1.7464 -2.3033 40 1 2.3911 -3.2428 -3.1892 41 1 2.5391 -5.4909 -2.8591 42 1 3.6082 -4.9849 -1.5287 43 1 3.6746 -7.2464 -1.1826 44 1 2.2167 -6.8719 -0.2347 45 1 1.5365 -8.6878 -1.5958 46 1 2.4220 -8.0819 -3.0076 47 1 1.3318 -10.2698 -4.4625 48 1 -1.2792 -6.3786 -2.1074 49 1 -0.1672 -6.6674 -0.7482 50 1 0.3338 -4.5398 -2.8871 51 1 -0.5216 -4.1983 -1.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948626142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:47 Heat of formation + Delta-G solvation = 79.001714 kcal Electronic energy + Delta-G solvation = -32261.452978 eV Core-core repulsion = 28166.031969 eV Total energy + Delta-G solvation = -4095.421009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.07339 -40.10912 -37.86071 -37.61208 -35.38102 -34.76409 -32.96542 -31.90310 -31.61989 -30.25019 -28.98983 -26.93608 -26.25293 -25.10161 -24.01056 -23.72503 -23.00998 -22.77527 -20.55592 -19.67702 -19.30251 -19.10861 -17.97392 -17.65939 -16.83351 -16.67383 -16.32134 -15.89109 -15.15739 -15.01039 -14.56207 -14.08052 -13.91543 -13.60530 -13.56832 -13.55536 -13.32563 -13.24729 -12.96726 -12.85989 -12.49808 -12.33265 -12.28656 -11.99669 -11.96182 -11.68102 -11.45166 -11.39339 -11.25141 -10.84867 -10.83279 -10.65751 -10.54006 -10.30493 -10.21034 -10.10616 -9.91518 -9.78973 -9.71719 -9.61881 -9.34327 -8.54852 -8.40669 -6.68737 -5.79637 -3.23566 1.04688 1.72174 2.38684 2.56470 3.09388 3.35442 3.41671 3.42045 3.42184 3.82907 3.93659 4.32652 4.43011 4.47914 4.49260 4.60232 5.00381 5.09956 5.15370 5.19584 5.23783 5.24757 5.32519 5.33310 5.38111 5.40202 5.50182 5.50527 5.61351 5.62207 5.68336 5.70082 5.76651 5.81896 5.99546 5.99787 6.15672 6.30409 6.43354 6.51656 6.61070 6.72845 6.77319 6.82393 6.89113 6.95453 7.41633 7.45118 7.70206 7.80801 8.01374 8.13324 8.45485 9.22603 9.89371 10.34758 11.27542 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002926 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.951425 B = 9566.874452 C = 9998.614518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.044 3.956 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.231 4.231 10 C 0.594 3.406 11 O -0.530 6.530 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.155 3.845 15 H 0.089 0.911 16 C -0.108 4.108 17 C -0.141 4.141 18 C 0.178 3.822 19 N -0.590 5.590 20 C -0.260 4.260 21 H 0.064 0.936 22 C 0.006 3.994 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.163 3.837 29 C -0.153 4.153 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.254 0.746 48 H 0.050 0.950 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 18.107 6.147 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.033 5.967 5 C -0.020 4.020 6 C -0.113 4.113 7 C -0.198 4.198 8 C -0.193 4.193 9 C -0.239 4.239 10 C 0.380 3.620 11 O -0.407 6.407 12 N -0.328 5.328 13 C -0.063 4.063 14 C 0.054 3.946 15 H 0.107 0.893 16 C -0.146 4.146 17 C -0.181 4.181 18 C 0.054 3.946 19 N -0.311 5.311 20 C -0.390 4.390 21 H 0.082 0.918 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.034 3.966 29 C -0.194 4.194 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.084 0.916 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.150 18.900 6.645 21.272 hybrid contribution -0.164 -0.752 -1.053 1.305 sum 6.986 18.148 5.592 20.234 Atomic orbital electron populations 1.20227 0.85089 1.04171 1.03988 1.24729 0.98581 0.86460 1.00913 1.73608 0.89029 1.23228 1.20445 1.84486 1.21551 1.22384 1.68252 1.23479 0.95505 0.83399 0.99580 1.20518 0.84067 0.99618 1.07059 1.23088 0.96813 1.00221 0.99715 1.23138 1.00681 1.03901 0.91556 1.21883 0.92404 0.95615 1.13957 1.16937 0.77252 0.83710 0.84116 1.90809 1.51136 1.67872 1.30892 1.48259 1.67636 1.11589 1.05305 1.21713 1.01227 0.97300 0.86073 1.20264 0.95247 0.77028 1.02041 0.89311 1.21262 0.95696 0.95489 1.02196 1.22044 1.00312 0.95795 0.99945 1.21095 0.86449 0.90936 0.96167 1.43677 1.23055 1.56579 1.07765 1.19147 1.31807 1.01125 0.86872 0.91792 1.25024 1.01364 0.94832 0.98081 1.70061 1.47818 1.02859 1.33982 0.86420 0.77929 0.76712 0.85979 1.21113 1.21687 1.20943 1.20558 0.94130 0.88002 0.93940 1.21865 0.95193 1.01727 1.00664 0.89574 0.89905 0.89714 0.84297 0.87664 0.87347 0.87100 0.87978 0.92639 0.91993 0.90042 0.90348 0.93466 0.92663 0.93408 0.95671 0.90731 0.93618 0.93171 0.94738 0.91611 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.00 0.38 -0.38 16 2 C 0.06 0.69 7.59 -79.77 -0.61 0.08 16 3 N -0.36 -4.57 12.01 34.78 0.42 -4.15 16 4 O 0.09 1.13 10.86 18.64 0.20 1.33 16 5 C 0.04 0.50 6.70 -34.63 -0.23 0.27 16 6 C -0.09 -0.85 6.15 -91.77 -0.56 -1.42 16 7 C -0.16 -1.08 10.18 -26.73 -0.27 -1.35 16 8 C -0.16 -1.08 10.23 -26.73 -0.27 -1.35 16 9 C -0.23 -3.06 4.47 -102.89 -0.46 -3.52 16 10 C 0.59 9.08 7.49 -12.53 -0.09 8.99 16 11 O -0.53 -9.96 16.40 5.27 0.09 -9.87 16 12 N -0.60 -8.51 2.59 -178.76 -0.46 -8.97 16 13 C 0.08 0.94 9.22 59.84 0.55 1.49 16 14 C 0.15 2.54 1.96 -70.98 -0.14 2.40 16 15 H 0.09 1.63 6.02 -51.93 -0.31 1.31 16 16 C -0.11 -1.82 4.34 -28.01 -0.12 -1.94 16 17 C -0.14 -2.60 5.71 -27.11 -0.15 -2.75 16 18 C 0.18 4.08 4.70 -2.76 -0.01 4.07 16 19 N -0.59 -13.83 2.26 -171.87 -0.39 -14.22 16 20 C -0.26 -6.73 9.44 -15.06 -0.14 -6.87 16 21 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 22 C 0.01 0.15 4.87 -17.43 -0.08 0.07 16 23 N -0.90 -25.35 11.01 55.49 0.61 -24.74 16 24 Si 0.90 20.98 29.58 -169.99 -5.03 15.96 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.16 3.27 5.65 -4.09 -0.02 3.25 16 29 C -0.15 -2.60 4.88 -28.58 -0.14 -2.74 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.65 6.65 -51.93 -0.35 0.31 16 40 H 0.08 0.97 7.25 -51.92 -0.38 0.60 16 41 H 0.08 1.47 7.23 -51.93 -0.38 1.09 16 42 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 45 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 46 H 0.07 1.90 6.32 -51.93 -0.33 1.57 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.05 1.02 7.99 -51.93 -0.41 0.61 16 49 H 0.03 0.68 8.06 -51.92 -0.42 0.26 16 50 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -30.56 406.30 -9.20 -39.76 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.37 Total: 0.50 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.39 Total: -1.72 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.18 Total: -52.08 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.29 Total: -8.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.56 -9.20 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948626142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.765 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds