Wall clock time and date at job start Wed Apr 1 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30009 * 127.33547 * 2 1 4 4 O 1.20657 * 112.30595 * 180.26905 * 3 2 1 5 5 C 1.33498 * 113.15136 * 359.73290 * 4 3 2 6 6 C 1.50700 * 126.82805 * 180.02562 * 5 4 3 7 7 C 1.53005 * 117.49614 * 8.61706 * 6 5 4 8 8 C 1.52996 * 117.49532 * 299.99777 * 6 5 4 9 9 C 1.37356 * 106.34048 * 359.97438 * 5 4 3 10 10 C 1.47402 * 128.56307 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99915 * 90.00301 * 10 9 5 12 12 N 1.34774 * 119.99896 * 270.00307 * 10 9 5 13 13 C 1.46491 * 120.00241 * 359.97438 * 12 10 9 14 14 C 1.46504 * 119.99813 * 179.97438 * 12 10 9 15 15 H 1.09003 * 108.44831 * 2.30976 * 14 12 10 16 16 C 1.52569 * 108.51229 * 244.76500 * 14 12 10 17 17 C 1.50885 * 109.35617 * 153.73372 * 16 14 12 18 18 C 1.54298 * 110.23623 * 91.79895 * 17 16 14 19 19 N 1.47607 * 111.94165 * 319.70194 * 18 17 16 20 20 C 1.36941 * 118.64546 * 137.77510 * 19 18 17 21 21 H 1.07997 * 120.00134 * 206.35094 * 20 19 18 22 22 C 1.38812 * 119.99902 * 26.34725 * 20 19 18 23 23 N 1.31619 * 119.99800 * 15.83232 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 195.83308 * 22 20 19 25 25 H 1.48500 * 109.46967 * 60.00242 * 24 22 20 26 26 H 1.48499 * 109.46832 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47147 * 300.00214 * 24 22 20 28 28 C 1.44580 * 122.71378 * 317.49660 * 19 18 17 29 29 C 1.47097 * 108.51245 * 119.99848 * 14 12 10 30 30 H 1.08996 * 109.47961 * 270.15192 * 1 2 3 31 31 H 1.09003 * 109.47364 * 30.15423 * 1 2 3 32 32 H 1.09002 * 109.47030 * 150.15415 * 1 2 3 33 33 H 1.08994 * 115.55105 * 154.32621 * 6 5 4 34 34 H 1.08991 * 117.50199 * 0.02562 * 7 6 5 35 35 H 1.09001 * 117.49325 * 145.02579 * 7 6 5 36 36 H 1.09008 * 117.50194 * 214.97858 * 8 6 5 37 37 H 1.09004 * 117.50249 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47509 * 270.00258 * 13 12 10 39 39 H 1.09000 * 109.47588 * 30.00053 * 13 12 10 40 40 H 1.09007 * 109.47475 * 150.00098 * 13 12 10 41 41 H 1.08995 * 109.49007 * 273.70015 * 16 14 12 42 42 H 1.09002 * 109.49226 * 33.74917 * 16 14 12 43 43 H 1.08999 * 109.36789 * 212.07547 * 17 16 14 44 44 H 1.08999 * 109.36906 * 331.82386 * 17 16 14 45 45 H 1.08993 * 109.13988 * 199.01134 * 18 17 16 46 46 H 1.09005 * 108.95754 * 80.26244 * 18 17 16 47 47 H 0.97006 * 120.00107 * 179.97438 * 23 22 20 48 48 H 1.08993 * 109.45327 * 211.02699 * 28 19 18 49 49 H 1.09007 * 109.44578 * 330.97382 * 28 19 18 50 50 H 1.09000 * 109.32580 * 63.79195 * 29 14 12 51 51 H 1.09000 * 109.32688 * 304.31941 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0052 5 6 3.6494 -0.6008 -0.0040 6 6 4.9711 -1.3246 -0.0088 7 6 6.2362 -0.4866 0.1875 8 6 5.9113 -1.0706 -1.1888 9 6 2.3991 -1.1696 0.0037 10 6 2.0400 -2.5992 0.0076 11 8 1.8977 -3.1875 1.0623 12 7 1.8695 -3.2543 -1.1578 13 6 2.0403 -2.5454 -2.4284 14 6 1.5131 -4.6753 -1.1539 15 1 1.3947 -4.9984 -0.1196 16 6 2.6611 -5.4643 -1.7763 17 6 2.6521 -6.8723 -1.2339 18 6 1.8163 -7.7914 -2.1491 19 7 0.5913 -7.1236 -2.6309 20 6 0.2272 -7.2857 -3.9411 21 1 -0.3642 -6.5288 -4.4348 22 6 0.6184 -8.4227 -4.6345 23 7 1.0588 -9.4750 -3.9779 24 14 0.5200 -8.4594 -6.4996 25 1 1.3761 -7.3841 -7.0617 26 1 0.9915 -9.7778 -6.9943 27 1 -0.8865 -8.2457 -6.9253 28 6 -0.2434 -6.3102 -1.7753 29 6 0.2238 -4.8354 -1.8437 30 1 -0.3635 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 4.9597 -2.3271 0.4189 34 1 6.1124 0.5881 0.3206 35 1 7.0572 -0.9378 0.7446 36 1 6.5188 -1.9059 -1.5373 37 1 5.5736 -0.3803 -1.9619 38 1 1.0860 -2.1196 -2.7381 39 1 2.7711 -1.7464 -2.3033 40 1 2.3911 -3.2428 -3.1892 41 1 2.5391 -5.4909 -2.8591 42 1 3.6082 -4.9849 -1.5287 43 1 3.6746 -7.2464 -1.1826 44 1 2.2167 -6.8719 -0.2347 45 1 1.5365 -8.6878 -1.5958 46 1 2.4220 -8.0819 -3.0076 47 1 1.3318 -10.2698 -4.4625 48 1 -1.2792 -6.3786 -2.1074 49 1 -0.1672 -6.6674 -0.7482 50 1 0.3338 -4.5398 -2.8871 51 1 -0.5216 -4.1983 -1.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948626142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:45 Heat of formation + Delta-G solvation = 64.221572 kcal Electronic energy + Delta-G solvation = -32262.093893 eV Core-core repulsion = 28166.031969 eV Total energy + Delta-G solvation = -4096.061924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.99768 -41.37201 -39.24804 -38.35661 -36.85620 -35.72633 -34.52507 -33.32131 -32.90892 -31.84606 -29.81671 -28.14218 -27.81158 -26.43242 -25.49407 -24.70414 -24.41220 -23.31441 -21.74241 -21.04605 -20.71300 -20.26056 -18.94139 -18.65053 -18.54632 -17.79329 -17.36001 -16.98800 -16.84059 -16.10883 -15.83865 -15.56032 -15.26549 -15.21990 -14.69727 -14.48376 -14.35631 -14.28074 -14.11984 -14.01846 -13.90834 -13.64246 -13.30496 -13.11531 -13.07507 -12.95335 -12.65697 -12.52366 -12.42722 -12.38435 -12.22155 -12.09715 -11.96126 -11.78971 -11.56240 -11.45176 -11.43132 -11.35114 -11.17596 -10.96070 -10.40733 -10.21773 -9.76417 -8.63062 -7.81205 -5.27481 0.15506 0.78415 1.24167 1.50403 1.51512 1.58190 1.61620 2.02077 2.55395 2.79652 2.98109 3.10933 3.32902 3.46436 3.60948 3.69242 3.79192 3.86408 3.96485 4.09274 4.13802 4.15111 4.34436 4.41329 4.43354 4.44940 4.49239 4.52430 4.55759 4.66341 4.69214 4.73547 4.75543 4.82795 4.91355 4.97077 5.01027 5.03260 5.05173 5.13961 5.15427 5.20099 5.24709 5.31377 5.46722 5.53394 5.59945 5.71541 5.84024 6.26191 6.44928 6.95240 7.10487 7.22668 7.98050 8.38405 9.23992 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002926 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.951425 B = 9566.874452 C = 9998.614518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.371 5.371 4 O 0.095 5.905 5 C 0.061 3.939 6 C -0.120 4.120 7 C -0.147 4.147 8 C -0.143 4.143 9 C -0.259 4.259 10 C 0.602 3.398 11 O -0.571 6.571 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.096 4.096 17 C -0.130 4.130 18 C 0.190 3.810 19 N -0.601 5.601 20 C -0.261 4.261 21 H 0.068 0.932 22 C -0.047 4.047 23 N -0.936 5.936 24 Si 0.961 3.039 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.278 1.278 28 C 0.159 3.841 29 C -0.135 4.135 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.050 0.950 45 H -0.009 1.009 46 H 0.045 0.955 47 H 0.248 0.752 48 H 0.045 0.955 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 20.500 5.532 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.079 5.079 4 O 0.035 5.965 5 C -0.002 4.002 6 C -0.139 4.139 7 C -0.184 4.184 8 C -0.180 4.180 9 C -0.266 4.266 10 C 0.388 3.612 11 O -0.451 6.451 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.060 3.940 15 H 0.090 0.910 16 C -0.135 4.135 17 C -0.169 4.169 18 C 0.065 3.935 19 N -0.323 5.323 20 C -0.391 4.391 21 H 0.086 0.914 22 C -0.242 4.242 23 N -0.582 5.582 24 Si 0.790 3.210 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.204 1.204 28 C 0.031 3.969 29 C -0.176 4.176 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.082 0.918 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.069 21.348 6.018 23.602 hybrid contribution -0.455 -1.475 -0.804 1.740 sum 7.614 19.873 5.214 21.911 Atomic orbital electron populations 1.20342 0.83583 1.05016 1.04619 1.25099 0.99611 0.85967 1.00067 1.73599 0.89319 1.23506 1.21460 1.84474 1.21347 1.22451 1.68228 1.23859 0.95999 0.83147 0.97201 1.20616 0.83966 0.99585 1.09742 1.23217 0.95437 1.00154 0.99594 1.23248 0.99152 1.04208 0.91343 1.21696 0.93510 0.94635 1.16781 1.17092 0.76253 0.84310 0.83499 1.90785 1.53003 1.68964 1.32323 1.48161 1.67029 1.10708 1.06181 1.21858 1.02354 0.97452 0.84630 1.19979 0.94828 0.78432 1.00723 0.90985 1.21129 0.96885 0.94547 1.00926 1.21890 1.00253 0.95934 0.98809 1.20832 0.86460 0.90963 0.95215 1.43859 1.23832 1.56968 1.07658 1.19461 1.30887 1.00806 0.87978 0.91394 1.25726 1.01925 0.94670 1.01916 1.70229 1.49500 1.03307 1.35207 0.85437 0.77994 0.76279 0.81294 1.20185 1.22529 1.20433 1.20679 0.93528 0.89413 0.93292 1.21599 0.95897 0.99282 1.00773 0.89013 0.88203 0.89671 0.85132 0.87352 0.85684 0.85802 0.87603 0.91530 0.90565 0.90012 0.91890 0.91479 0.90977 0.93140 0.99073 0.93640 0.94322 0.93699 0.94700 0.91809 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.49 71.24 0.75 -0.65 16 2 C 0.05 1.27 7.59 45.16 0.34 1.62 16 3 N -0.37 -8.91 12.01 -44.79 -0.54 -9.45 16 4 O 0.09 2.09 10.86 76.94 0.84 2.93 16 5 C 0.06 1.32 6.70 25.48 0.17 1.49 16 6 C -0.12 -1.95 6.15 -11.54 -0.07 -2.03 16 7 C -0.15 -1.57 10.18 30.60 0.31 -1.26 16 8 C -0.14 -1.57 10.23 30.59 0.31 -1.25 16 9 C -0.26 -6.50 4.47 -18.75 -0.08 -6.58 16 10 C 0.60 17.72 7.49 86.66 0.65 18.37 16 11 O -0.57 -21.27 16.40 -4.06 -0.07 -21.33 16 12 N -0.59 -15.87 2.59 -837.73 -2.17 -18.04 16 13 C 0.08 1.68 9.22 127.77 1.18 2.86 16 14 C 0.16 5.12 1.96 43.01 0.08 5.21 16 15 H 0.07 2.59 6.02 -2.39 -0.01 2.57 16 16 C -0.10 -3.13 4.34 29.76 0.13 -3.00 16 17 C -0.13 -4.71 5.71 30.35 0.17 -4.54 16 18 C 0.19 8.92 4.70 86.61 0.41 9.33 16 19 N -0.60 -28.52 2.26 -697.68 -1.58 -30.10 16 20 C -0.26 -13.57 9.44 84.03 0.79 -12.78 16 21 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 22 C -0.05 -2.54 4.87 84.86 0.41 -2.12 16 23 N -0.94 -54.04 11.01 21.65 0.24 -53.80 16 24 Si 0.96 43.37 29.58 68.60 2.03 45.40 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 28 C 0.16 6.35 5.65 87.37 0.49 6.84 16 29 C -0.13 -4.40 4.88 29.39 0.14 -4.26 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.11 1.12 8.02 -2.39 -0.02 1.10 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.41 6.65 -2.39 -0.02 1.40 16 40 H 0.08 1.76 7.25 -2.38 -0.02 1.74 16 41 H 0.06 2.28 7.23 -2.39 -0.02 2.26 16 42 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 1.82 7.31 -2.39 -0.02 1.80 16 45 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16 46 H 0.05 2.38 6.32 -2.38 -0.02 2.37 16 47 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 48 H 0.04 1.82 7.99 -2.39 -0.02 1.80 16 49 H 0.03 1.38 8.06 -2.38 -0.02 1.36 16 50 H 0.06 2.14 7.62 -2.39 -0.02 2.12 16 51 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -66.90 406.30 5.87 -61.03 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.92 Total: 16.11 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.20 Total: 7.24 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.04 Total: -111.39 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.77 Total: -18.40 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.90 5.87 -61.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948626142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.254 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds