Wall clock time and date at job start Wed Apr 1 2020 04:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41382 * 126.80171 * 2 1 4 4 C 1.35446 * 103.98511 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.77633 * 179.97438 * 4 3 2 6 6 C 1.50701 * 115.54663 * 330.04467 * 5 4 3 7 7 O 1.21280 * 120.00008 * 111.80063 * 6 5 4 8 8 N 1.34774 * 120.00176 * 291.79434 * 6 5 4 9 9 C 1.46506 * 119.99603 * 4.83259 * 8 6 5 10 10 C 1.46494 * 120.00275 * 184.82814 * 8 6 5 11 11 H 1.09001 * 110.21379 * 1.93823 * 10 8 6 12 12 C 1.50126 * 110.25034 * 124.02178 * 10 8 6 13 13 C 1.54841 * 110.81940 * 216.65733 * 12 10 8 14 14 C 1.54906 * 110.14076 * 321.13599 * 13 12 10 15 15 N 1.43428 * 116.07775 * 318.63904 * 14 13 12 16 16 C 1.36947 * 120.53649 * 271.54887 * 15 14 13 17 17 H 1.07998 * 119.99776 * 325.99479 * 16 15 14 18 18 C 1.38811 * 120.00182 * 145.99952 * 16 15 14 19 19 N 1.31613 * 119.99951 * 3.84886 * 18 16 15 20 20 Si 1.86799 * 119.99918 * 183.84667 * 18 16 15 21 21 H 1.48499 * 109.47025 * 60.00176 * 20 18 16 22 22 H 1.48500 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47211 * 300.00209 * 20 18 16 24 24 C 1.50166 * 118.93164 * 91.56780 * 15 14 13 25 25 C 1.46243 * 107.53213 * 289.59200 * 24 15 14 26 26 C 1.53001 * 117.50135 * 115.71837 * 5 4 3 27 27 C 1.52998 * 117.49897 * 184.37678 * 5 4 3 28 28 O 1.34045 * 106.44670 * 0.23529 * 4 3 2 29 29 N 1.20916 * 111.56888 * 359.56872 * 28 4 3 30 30 H 1.09002 * 109.47156 * 90.00191 * 1 2 3 31 31 H 1.09004 * 109.46885 * 209.99866 * 1 2 3 32 32 H 1.09000 * 109.47479 * 329.99922 * 1 2 3 33 33 H 1.07996 * 128.00631 * 359.96273 * 3 2 1 34 34 H 1.08998 * 109.47305 * 275.09089 * 9 8 6 35 35 H 1.08998 * 109.47429 * 35.09727 * 9 8 6 36 36 H 1.09004 * 109.46704 * 155.09256 * 9 8 6 37 37 H 1.08997 * 109.20912 * 337.00501 * 12 10 8 38 38 H 1.09003 * 109.20641 * 96.35806 * 12 10 8 39 39 H 1.08999 * 109.36284 * 200.92789 * 13 12 10 40 40 H 1.09003 * 109.36119 * 81.33650 * 13 12 10 41 41 H 1.09001 * 108.15808 * 196.92123 * 14 13 12 42 42 H 1.09003 * 108.16100 * 80.35253 * 14 13 12 43 43 H 0.97007 * 120.00477 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.84486 * 49.09079 * 24 15 14 45 45 H 1.09000 * 109.85060 * 170.01839 * 24 15 14 46 46 H 1.09002 * 108.52530 * 179.64461 * 25 24 15 47 47 H 1.09002 * 108.52069 * 297.31749 * 25 24 15 48 48 H 1.09003 * 117.49568 * 215.00405 * 26 5 4 49 49 H 1.08998 * 117.49650 * 0.02562 * 26 5 4 50 50 H 1.09000 * 117.49981 * 359.97438 * 27 5 4 51 51 H 1.09005 * 117.49788 * 144.96942 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8665 2.7141 -0.6795 7 8 4.9828 3.7281 -0.0245 8 7 4.7055 2.7897 -2.0155 9 6 4.4593 1.5729 -2.7935 10 6 4.7766 4.0883 -2.6896 11 1 4.9986 4.8752 -1.9687 12 6 5.8208 4.0577 -3.7677 13 6 6.5608 5.4150 -3.8560 14 6 5.5630 6.5811 -3.6456 15 7 4.2895 6.4454 -4.2913 16 6 4.1087 6.8904 -5.5738 17 1 4.6337 7.7684 -5.9198 18 6 3.2505 6.2128 -6.4291 19 7 2.5531 5.1885 -5.9858 20 14 3.0856 6.7550 -8.2090 21 1 4.4074 6.6619 -8.8793 22 1 2.1134 5.8754 -8.9063 23 1 2.6044 8.1591 -8.2562 24 6 3.1574 5.8081 -3.5382 25 6 3.4628 4.3840 -3.4059 26 6 5.8093 1.2201 1.2233 27 6 6.1963 0.5600 -0.1025 28 8 3.4537 -0.7253 -0.0044 29 7 2.2868 -1.0424 0.0007 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 2.0709 2.1743 -0.0006 34 1 5.4101 1.0996 -3.0385 35 1 3.8507 0.8840 -2.2079 36 1 3.9338 1.8300 -3.7133 37 1 6.5413 3.2702 -3.5469 38 1 5.3424 3.8479 -4.7244 39 1 7.0258 5.5099 -4.8372 40 1 7.3323 5.4566 -3.0871 41 1 6.0306 7.4974 -4.0058 42 1 5.3909 6.6921 -2.5750 43 1 1.9531 4.7151 -6.5833 44 1 3.0687 6.2607 -2.5507 45 1 2.2263 5.9381 -4.0898 46 1 2.6529 3.9059 -2.8550 47 1 3.5082 3.9455 -4.4027 48 1 6.3803 2.0943 1.5361 49 1 5.4662 0.5697 2.0278 50 1 6.1077 -0.5243 -0.1695 51 1 7.0219 0.9997 -0.6622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948710528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:50 Heat of formation + Delta-G solvation = 91.082537 kcal Electronic energy + Delta-G solvation = -32735.595332 eV Core-core repulsion = 28640.698188 eV Total energy + Delta-G solvation = -4094.897145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.10054 -40.39517 -38.17836 -36.61696 -35.25805 -34.91986 -32.78927 -31.69220 -31.14565 -30.54300 -28.84491 -26.83666 -26.37709 -25.16609 -23.61856 -23.30410 -23.10106 -22.64160 -20.93881 -19.73705 -19.13792 -18.55529 -17.81077 -17.68541 -16.78107 -16.59242 -16.05985 -15.42118 -15.03379 -14.63988 -14.48179 -13.97134 -13.75289 -13.73163 -13.53200 -13.46455 -13.26068 -13.11762 -12.98505 -12.81553 -12.52957 -12.27096 -11.97817 -11.84329 -11.75168 -11.51079 -11.32316 -11.25147 -11.12383 -11.00934 -10.84163 -10.77227 -10.28703 -10.16088 -10.13021 -9.99285 -9.94151 -9.63776 -9.43820 -9.35222 -9.23743 -8.49982 -8.21519 -6.56831 -5.81715 -3.34165 1.22601 2.07166 2.29442 2.91838 3.16475 3.35598 3.40757 3.42716 3.50622 4.02438 4.04447 4.36351 4.46696 4.52833 4.60059 4.88880 5.07612 5.26494 5.30232 5.31391 5.32099 5.34718 5.37040 5.43611 5.54288 5.54720 5.59981 5.64283 5.67194 5.74393 5.81179 5.82209 5.90043 5.97515 6.17892 6.27727 6.31095 6.49222 6.52385 6.64061 6.87225 6.92424 6.93012 7.06009 7.11229 7.22080 7.53687 7.69841 7.76583 7.92816 8.09854 8.27135 8.49923 9.20369 9.82850 10.41209 11.23910 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.003376 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.189132 B = 8292.332440 C = 9466.102144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 C -0.215 4.215 4 C 0.015 3.985 5 C -0.089 4.089 6 C 0.556 3.444 7 O -0.530 6.530 8 N -0.589 5.589 9 C 0.078 3.922 10 C 0.139 3.861 11 H 0.098 0.902 12 C -0.111 4.111 13 C -0.139 4.139 14 C 0.156 3.844 15 N -0.590 5.590 16 C -0.249 4.249 17 H 0.063 0.937 18 C 0.011 3.989 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.167 3.833 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.146 4.146 28 O 0.099 5.901 29 N -0.366 5.366 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.253 0.747 44 H 0.002 0.998 45 H 0.100 0.900 46 H 0.028 0.972 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.107 0.893 50 H 0.113 0.887 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -11.782 11.770 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C -0.236 4.236 4 C -0.049 4.049 5 C -0.094 4.094 6 C 0.341 3.659 7 O -0.406 6.406 8 N -0.319 5.319 9 C -0.065 4.065 10 C 0.038 3.962 11 H 0.116 0.884 12 C -0.149 4.149 13 C -0.180 4.180 14 C 0.027 3.973 15 N -0.312 5.312 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.187 4.187 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.043 3.957 25 C -0.168 4.168 26 C -0.164 4.164 27 C -0.183 4.183 28 O 0.033 5.967 29 N -0.072 5.072 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.189 0.811 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.118 0.882 46 H 0.047 0.953 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.126 0.874 50 H 0.131 0.869 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.293 -12.633 11.983 17.563 hybrid contribution -0.236 0.783 -1.214 1.464 sum 2.057 -11.850 10.769 16.144 Atomic orbital electron populations 1.20191 0.85744 1.03754 1.03705 1.23577 0.99124 0.88537 1.02305 1.22402 0.90834 1.01434 1.08961 1.22779 0.95544 0.83577 1.02965 1.19451 0.87585 0.95171 1.07201 1.18847 0.77106 0.87757 0.82222 1.90709 1.50128 1.35637 1.64167 1.48005 1.69004 1.09092 1.05835 1.21790 1.00919 0.86515 0.97287 1.20772 0.98286 0.82684 0.94490 0.88383 1.21734 0.96891 0.97114 0.99190 1.22806 0.98313 0.96774 1.00123 1.20435 0.87169 0.94586 0.95123 1.44073 1.03749 1.70387 1.12944 1.19138 1.25176 1.06397 0.87126 0.91914 1.25219 0.99905 0.95963 0.97584 1.69847 1.28799 1.22137 1.34116 0.86407 0.77390 0.77769 0.85376 1.21027 1.21693 1.21062 1.20163 0.94016 0.89473 0.92022 1.21358 0.92873 1.01005 1.01519 1.23174 0.99034 1.03367 0.90856 1.23210 0.94715 0.99928 1.00490 1.84789 1.21830 1.22013 1.68026 1.73840 0.89092 1.23762 1.20473 0.89855 0.90594 0.89848 0.81118 0.92691 0.92244 0.89803 0.94246 0.90571 0.92748 0.93764 0.94966 0.95400 0.93672 0.98015 0.88174 0.95294 0.88003 0.86555 0.87447 0.86892 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.47 36.00 0.38 -0.31 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 C -0.21 -2.75 10.41 -39.38 -0.41 -3.16 16 4 C 0.01 0.19 4.60 -35.30 -0.16 0.02 16 5 C -0.09 -1.08 1.54 -156.81 -0.24 -1.32 16 6 C 0.56 8.65 6.54 -10.99 -0.07 8.58 16 7 O -0.53 -10.00 16.14 5.56 0.09 -9.91 16 8 N -0.59 -9.24 2.64 -175.86 -0.46 -9.71 16 9 C 0.08 1.06 9.26 59.85 0.55 1.61 16 10 C 0.14 2.57 2.29 -69.61 -0.16 2.41 16 11 H 0.10 2.01 5.13 -51.93 -0.27 1.75 16 12 C -0.11 -2.04 4.82 -27.19 -0.13 -2.17 16 13 C -0.14 -2.59 6.41 -24.76 -0.16 -2.75 16 14 C 0.16 3.27 5.17 -4.66 -0.02 3.25 16 15 N -0.59 -14.17 2.59 -175.08 -0.45 -14.62 16 16 C -0.25 -6.51 9.58 -15.06 -0.14 -6.65 16 17 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 18 C 0.01 0.29 5.33 -17.43 -0.09 0.20 16 19 N -0.90 -23.74 8.85 55.49 0.49 -23.25 16 20 Si 0.90 20.85 29.56 -169.99 -5.02 15.83 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.17 3.86 5.23 -5.20 -0.03 3.84 16 25 C -0.13 -2.66 3.81 -30.19 -0.12 -2.77 16 26 C -0.13 -1.24 9.77 -26.70 -0.26 -1.50 16 27 C -0.15 -1.34 9.87 -26.70 -0.26 -1.60 16 28 O 0.10 1.25 10.97 17.16 0.19 1.44 16 29 N -0.37 -4.88 12.07 33.42 0.40 -4.48 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.76 5.19 -51.93 -0.27 0.49 16 36 H 0.08 1.23 7.14 -51.93 -0.37 0.86 16 37 H 0.04 0.65 7.83 -51.93 -0.41 0.24 16 38 H 0.08 1.61 6.82 -51.93 -0.35 1.25 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 42 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 43 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 44 H 0.00 0.04 8.12 -51.93 -0.42 -0.38 16 45 H 0.10 2.58 6.11 -51.93 -0.32 2.26 16 46 H 0.03 0.58 8.02 -51.93 -0.42 0.17 16 47 H 0.10 2.36 4.95 -51.93 -0.26 2.10 16 48 H 0.12 1.18 8.04 -51.93 -0.42 0.76 16 49 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.11 0.87 8.00 -51.93 -0.42 0.46 16 51 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -28.89 396.18 -8.77 -37.66 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.04 Total: 3.72 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.93 Total: -2.65 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.02 Total: -52.05 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.89 -8.77 -37.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948710528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.741 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds