Wall clock time and date at job start Wed Apr 1 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41382 * 126.80171 * 2 1 4 4 C 1.35446 * 103.98511 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.77633 * 179.97438 * 4 3 2 6 6 C 1.50701 * 115.54663 * 330.04467 * 5 4 3 7 7 O 1.21280 * 120.00008 * 111.80063 * 6 5 4 8 8 N 1.34774 * 120.00176 * 291.79434 * 6 5 4 9 9 C 1.46506 * 119.99603 * 4.83259 * 8 6 5 10 10 C 1.46494 * 120.00275 * 184.82814 * 8 6 5 11 11 H 1.09001 * 110.21379 * 1.93823 * 10 8 6 12 12 C 1.50126 * 110.25034 * 124.02178 * 10 8 6 13 13 C 1.54841 * 110.81940 * 216.65733 * 12 10 8 14 14 C 1.54906 * 110.14076 * 321.13599 * 13 12 10 15 15 N 1.43428 * 116.07775 * 318.63904 * 14 13 12 16 16 C 1.36947 * 120.53649 * 271.54887 * 15 14 13 17 17 H 1.07998 * 119.99776 * 325.99479 * 16 15 14 18 18 C 1.38811 * 120.00182 * 145.99952 * 16 15 14 19 19 N 1.31613 * 119.99951 * 3.84886 * 18 16 15 20 20 Si 1.86799 * 119.99918 * 183.84667 * 18 16 15 21 21 H 1.48499 * 109.47025 * 60.00176 * 20 18 16 22 22 H 1.48500 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47211 * 300.00209 * 20 18 16 24 24 C 1.50166 * 118.93164 * 91.56780 * 15 14 13 25 25 C 1.46243 * 107.53213 * 289.59200 * 24 15 14 26 26 C 1.53001 * 117.50135 * 115.71837 * 5 4 3 27 27 C 1.52998 * 117.49897 * 184.37678 * 5 4 3 28 28 O 1.34045 * 106.44670 * 0.23529 * 4 3 2 29 29 N 1.20916 * 111.56888 * 359.56872 * 28 4 3 30 30 H 1.09002 * 109.47156 * 90.00191 * 1 2 3 31 31 H 1.09004 * 109.46885 * 209.99866 * 1 2 3 32 32 H 1.09000 * 109.47479 * 329.99922 * 1 2 3 33 33 H 1.07996 * 128.00631 * 359.96273 * 3 2 1 34 34 H 1.08998 * 109.47305 * 275.09089 * 9 8 6 35 35 H 1.08998 * 109.47429 * 35.09727 * 9 8 6 36 36 H 1.09004 * 109.46704 * 155.09256 * 9 8 6 37 37 H 1.08997 * 109.20912 * 337.00501 * 12 10 8 38 38 H 1.09003 * 109.20641 * 96.35806 * 12 10 8 39 39 H 1.08999 * 109.36284 * 200.92789 * 13 12 10 40 40 H 1.09003 * 109.36119 * 81.33650 * 13 12 10 41 41 H 1.09001 * 108.15808 * 196.92123 * 14 13 12 42 42 H 1.09003 * 108.16100 * 80.35253 * 14 13 12 43 43 H 0.97007 * 120.00477 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.84486 * 49.09079 * 24 15 14 45 45 H 1.09000 * 109.85060 * 170.01839 * 24 15 14 46 46 H 1.09002 * 108.52530 * 179.64461 * 25 24 15 47 47 H 1.09002 * 108.52069 * 297.31749 * 25 24 15 48 48 H 1.09003 * 117.49568 * 215.00405 * 26 5 4 49 49 H 1.08998 * 117.49650 * 0.02562 * 26 5 4 50 50 H 1.09000 * 117.49981 * 359.97438 * 27 5 4 51 51 H 1.09005 * 117.49788 * 144.96942 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8665 2.7141 -0.6795 7 8 4.9828 3.7281 -0.0245 8 7 4.7055 2.7897 -2.0155 9 6 4.4593 1.5729 -2.7935 10 6 4.7766 4.0883 -2.6896 11 1 4.9986 4.8752 -1.9687 12 6 5.8208 4.0577 -3.7677 13 6 6.5608 5.4150 -3.8560 14 6 5.5630 6.5811 -3.6456 15 7 4.2895 6.4454 -4.2913 16 6 4.1087 6.8904 -5.5738 17 1 4.6337 7.7684 -5.9198 18 6 3.2505 6.2128 -6.4291 19 7 2.5531 5.1885 -5.9858 20 14 3.0856 6.7550 -8.2090 21 1 4.4074 6.6619 -8.8793 22 1 2.1134 5.8754 -8.9063 23 1 2.6044 8.1591 -8.2562 24 6 3.1574 5.8081 -3.5382 25 6 3.4628 4.3840 -3.4059 26 6 5.8093 1.2201 1.2233 27 6 6.1963 0.5600 -0.1025 28 8 3.4537 -0.7253 -0.0044 29 7 2.2868 -1.0424 0.0007 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 2.0709 2.1743 -0.0006 34 1 5.4101 1.0996 -3.0385 35 1 3.8507 0.8840 -2.2079 36 1 3.9338 1.8300 -3.7133 37 1 6.5413 3.2702 -3.5469 38 1 5.3424 3.8479 -4.7244 39 1 7.0258 5.5099 -4.8372 40 1 7.3323 5.4566 -3.0871 41 1 6.0306 7.4974 -4.0058 42 1 5.3909 6.6921 -2.5750 43 1 1.9531 4.7151 -6.5833 44 1 3.0687 6.2607 -2.5507 45 1 2.2263 5.9381 -4.0898 46 1 2.6529 3.9059 -2.8550 47 1 3.5082 3.9455 -4.4027 48 1 6.3803 2.0943 1.5361 49 1 5.4662 0.5697 2.0278 50 1 6.1077 -0.5243 -0.1695 51 1 7.0219 0.9997 -0.6622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948710528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:49 Heat of formation + Delta-G solvation = 77.364364 kcal Electronic energy + Delta-G solvation = -32736.190197 eV Core-core repulsion = 28640.698188 eV Total energy + Delta-G solvation = -4095.492009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.05737 -41.63490 -39.64311 -37.74002 -36.75393 -35.83063 -34.49463 -32.90371 -32.59118 -32.33307 -29.64753 -28.20974 -27.89064 -26.52794 -24.92710 -24.89130 -24.32165 -23.43612 -22.11694 -21.43579 -20.35785 -19.89826 -18.86519 -18.69823 -18.60710 -17.73963 -17.31879 -16.89548 -16.48944 -15.89424 -15.78384 -15.46013 -15.35704 -15.15176 -14.73678 -14.51478 -14.29673 -14.24492 -14.10974 -13.96047 -13.66085 -13.51221 -13.41454 -13.28309 -13.12952 -12.94061 -12.67323 -12.60960 -12.54459 -12.40088 -12.17230 -12.00799 -11.90794 -11.81700 -11.73700 -11.62531 -11.20521 -11.03983 -11.02968 -10.87406 -10.41830 -10.21277 -9.62868 -8.48683 -7.80772 -5.35636 0.27787 1.12845 1.18357 1.50097 1.51224 1.56800 1.76729 2.09515 2.53899 2.62518 3.14152 3.17276 3.33503 3.35287 3.62930 3.66631 3.79332 3.94242 4.01487 4.12785 4.17369 4.18925 4.30012 4.45994 4.48723 4.57319 4.59023 4.64297 4.65139 4.65556 4.71764 4.76840 4.79707 4.82046 4.87009 4.90435 4.94817 5.04625 5.11110 5.17347 5.20478 5.24123 5.36157 5.36876 5.51339 5.63916 5.69821 5.74388 6.10110 6.36486 6.51221 7.02389 7.15720 7.22190 7.89555 8.45739 9.22273 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.003376 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.189132 B = 8292.332440 C = 9466.102144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 C -0.234 4.234 4 C 0.024 3.976 5 C -0.109 4.109 6 C 0.557 3.443 7 O -0.567 6.567 8 N -0.590 5.590 9 C 0.081 3.919 10 C 0.154 3.846 11 H 0.081 0.919 12 C -0.100 4.100 13 C -0.132 4.132 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.267 4.267 17 H 0.058 0.942 18 C -0.027 4.027 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.123 4.123 28 O 0.102 5.898 29 N -0.384 5.384 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.249 0.751 44 H 0.002 0.998 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.124 0.876 50 H 0.134 0.866 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -13.445 12.275 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C -0.256 4.256 4 C -0.040 4.040 5 C -0.114 4.114 6 C 0.344 3.656 7 O -0.446 6.446 8 N -0.320 5.320 9 C -0.061 4.061 10 C 0.051 3.949 11 H 0.099 0.901 12 C -0.138 4.138 13 C -0.173 4.173 14 C 0.024 3.976 15 N -0.325 5.325 16 C -0.397 4.397 17 H 0.076 0.924 18 C -0.224 4.224 19 N -0.560 5.560 20 Si 0.787 3.213 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.210 1.210 24 C 0.047 3.953 25 C -0.150 4.150 26 C -0.156 4.156 27 C -0.160 4.160 28 O 0.037 5.963 29 N -0.091 5.091 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.181 0.819 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.089 0.911 46 H 0.044 0.956 47 H 0.099 0.901 48 H 0.130 0.870 49 H 0.143 0.857 50 H 0.152 0.848 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.570 -14.316 12.494 19.334 hybrid contribution -0.655 1.361 -1.323 2.008 sum 2.914 -12.955 11.171 17.353 Atomic orbital electron populations 1.20335 0.83824 1.04932 1.04431 1.24007 1.00435 0.87936 1.01190 1.22460 0.91584 1.01378 1.10166 1.22784 0.95492 0.83616 1.02112 1.19268 0.88787 0.93939 1.09366 1.19326 0.75776 0.88753 0.81716 1.90688 1.51690 1.37418 1.64835 1.47968 1.69033 1.08652 1.06304 1.21865 1.02260 0.85651 0.96362 1.20341 0.96725 0.83908 0.93915 0.90109 1.21573 0.97027 0.97726 0.97523 1.22707 0.98073 0.95691 1.00799 1.20520 0.86546 0.95644 0.94892 1.44159 1.04979 1.70739 1.12606 1.19312 1.25536 1.06649 0.88184 0.92445 1.25780 0.99831 0.96296 1.00499 1.70007 1.28781 1.22596 1.34601 0.85510 0.77100 0.77160 0.81522 1.20729 1.21938 1.20982 1.20009 0.92905 0.91034 0.91307 1.21075 0.94297 0.99100 1.00572 1.23304 0.97589 1.03542 0.91186 1.23399 0.92453 1.00740 0.99405 1.84769 1.21665 1.21767 1.68072 1.73826 0.89429 1.24218 1.21610 0.89251 0.89520 0.88599 0.81893 0.90129 0.91493 0.91340 0.91738 0.93404 0.93136 0.91142 0.95115 0.95141 0.94155 0.97960 0.91140 0.95553 0.90150 0.86968 0.85749 0.84821 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.47 71.23 0.75 -0.55 16 2 C 0.02 0.53 7.33 43.58 0.32 0.85 16 3 C -0.23 -5.85 10.41 22.40 0.23 -5.62 16 4 C 0.02 0.55 4.60 25.04 0.12 0.67 16 5 C -0.11 -2.41 1.54 -53.67 -0.08 -2.50 16 6 C 0.56 16.75 6.54 87.66 0.57 17.32 16 7 O -0.57 -21.21 16.14 -3.03 -0.05 -21.26 16 8 N -0.59 -17.94 2.64 -828.70 -2.19 -20.13 16 9 C 0.08 2.07 9.26 127.77 1.18 3.25 16 10 C 0.15 5.64 2.29 43.91 0.10 5.74 16 11 H 0.08 3.31 5.13 -2.39 -0.01 3.30 16 12 C -0.10 -3.58 4.82 30.30 0.15 -3.43 16 13 C -0.13 -4.76 6.41 31.87 0.20 -4.55 16 14 C 0.15 6.38 5.17 87.60 0.45 6.83 16 15 N -0.60 -29.49 2.59 -707.82 -1.84 -31.32 16 16 C -0.27 -14.19 9.58 84.03 0.81 -13.38 16 17 H 0.06 3.06 7.83 -2.91 -0.02 3.04 16 18 C -0.03 -1.45 5.33 84.86 0.45 -0.99 16 19 N -0.91 -49.08 8.85 21.65 0.19 -48.88 16 20 Si 0.96 43.21 29.56 68.60 2.03 45.24 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 C 0.17 8.18 5.23 83.58 0.44 8.62 16 25 C -0.11 -4.71 3.81 28.36 0.11 -4.60 16 26 C -0.12 -2.01 9.77 30.62 0.30 -1.71 16 27 C -0.12 -1.83 9.87 30.62 0.30 -1.53 16 28 O 0.10 2.37 10.97 71.59 0.78 3.15 16 29 N -0.38 -9.68 12.07 -49.56 -0.60 -10.27 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.61 5.19 -2.39 -0.01 1.60 16 36 H 0.07 1.98 7.14 -2.38 -0.02 1.96 16 37 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 38 H 0.05 2.00 6.82 -2.39 -0.02 1.99 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 42 H 0.03 1.25 6.89 -2.39 -0.02 1.23 16 43 H 0.25 13.14 8.31 -92.70 -0.77 12.37 16 44 H 0.00 0.11 8.12 -2.39 -0.02 0.09 16 45 H 0.07 3.78 6.11 -2.39 -0.01 3.77 16 46 H 0.03 1.09 8.02 -2.39 -0.02 1.07 16 47 H 0.08 3.83 4.95 -2.39 -0.01 3.82 16 48 H 0.11 2.04 8.04 -2.39 -0.02 2.02 16 49 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.13 1.49 8.00 -2.39 -0.02 1.47 16 51 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -63.01 396.18 5.66 -57.34 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.93 Total: 21.72 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.40 Total: 4.41 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.43 Total: -110.61 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.74 Total: -18.10 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -63.01 5.66 -57.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948710528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.709 kcal (2) G-P(sol) polarization free energy of solvation -63.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds