Wall clock time and date at job start Wed Apr 1 2020 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41379 * 126.80487 * 2 1 4 4 C 1.35448 * 103.98416 * 180.16847 * 3 2 1 5 5 C 1.50703 * 126.77724 * 179.91084 * 4 3 2 6 6 C 1.50695 * 115.54590 * 328.98562 * 5 4 3 7 7 O 1.21289 * 119.99891 * 113.34746 * 6 5 4 8 8 N 1.34776 * 120.00246 * 293.34757 * 6 5 4 9 9 C 1.46497 * 120.00124 * 355.46708 * 8 6 5 10 10 C 1.46501 * 119.99702 * 175.47528 * 8 6 5 11 11 H 1.09000 * 108.32360 * 2.37929 * 10 8 6 12 12 C 1.52567 * 108.50968 * 244.76413 * 10 8 6 13 13 C 1.50884 * 109.35791 * 153.73201 * 12 10 8 14 14 C 1.53951 * 110.09673 * 91.89043 * 13 12 10 15 15 N 1.47600 * 112.13851 * 319.43825 * 14 13 12 16 16 C 1.36939 * 118.64757 * 137.86661 * 15 14 13 17 17 H 1.07994 * 120.00652 * 211.49352 * 16 15 14 18 18 C 1.38824 * 119.99555 * 31.49479 * 16 15 14 19 19 N 1.31620 * 119.99882 * 11.01850 * 18 16 15 20 20 Si 1.86792 * 119.99836 * 191.01810 * 18 16 15 21 21 H 1.48500 * 109.47337 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99947 * 20 18 16 23 23 H 1.48502 * 109.46949 * 239.99862 * 20 18 16 24 24 C 1.44666 * 122.54498 * 317.85421 * 15 14 13 25 25 C 1.47095 * 108.51398 * 119.99976 * 10 8 6 26 26 C 1.52999 * 117.50049 * 114.66078 * 5 4 3 27 27 C 1.53002 * 117.49991 * 183.31927 * 5 4 3 28 28 O 1.34042 * 106.44783 * 359.64307 * 4 3 2 29 29 N 1.20918 * 111.56696 * 0.24376 * 28 4 3 30 30 H 1.09003 * 109.47052 * 270.26111 * 1 2 3 31 31 H 1.09005 * 109.47037 * 30.25211 * 1 2 3 32 32 H 1.08998 * 109.47420 * 150.25871 * 1 2 3 33 33 H 1.07994 * 128.00526 * 0.06731 * 3 2 1 34 34 H 1.08997 * 109.47712 * 275.22692 * 9 8 6 35 35 H 1.08999 * 109.46608 * 35.23122 * 9 8 6 36 36 H 1.09004 * 109.46727 * 155.22098 * 9 8 6 37 37 H 1.09005 * 109.49312 * 273.69823 * 12 10 8 38 38 H 1.09002 * 109.49452 * 33.76611 * 12 10 8 39 39 H 1.08999 * 109.36595 * 212.07928 * 13 12 10 40 40 H 1.09000 * 109.36445 * 331.82348 * 13 12 10 41 41 H 1.08997 * 108.94731 * 80.11904 * 14 13 12 42 42 H 1.08994 * 108.94808 * 198.75200 * 14 13 12 43 43 H 0.97002 * 119.99744 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.61414 * 330.84708 * 24 15 14 45 45 H 1.08995 * 109.32661 * 210.89843 * 24 15 14 46 46 H 1.08996 * 109.32726 * 304.31020 * 25 10 8 47 47 H 1.09006 * 109.32777 * 63.96188 * 25 10 8 48 48 H 1.09000 * 117.49758 * 215.00433 * 26 5 4 49 49 H 1.08998 * 117.49754 * 0.02562 * 26 5 4 50 50 H 1.09005 * 117.49834 * 359.97392 * 27 5 4 51 51 H 1.08992 * 117.49725 * 144.97193 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0039 5 6 4.9022 1.3693 -0.0075 6 6 4.8710 2.7034 -0.7075 7 8 5.0114 3.7260 -0.0705 8 7 4.6869 2.7604 -2.0414 9 6 4.6166 1.5244 -2.8246 10 6 4.5573 4.0585 -2.7081 11 1 4.6798 4.8417 -1.9600 12 6 3.1527 4.1639 -3.2942 13 6 2.7613 5.6175 -3.3968 14 6 3.1415 6.1711 -4.7821 15 7 4.4571 5.6792 -5.2358 16 6 4.5994 5.2952 -6.5425 17 1 5.2911 4.5074 -6.8016 18 6 3.8546 5.9188 -7.5342 19 7 3.1788 7.0143 -7.2590 20 14 3.8113 5.2032 -9.2591 21 1 4.6481 3.9774 -9.3076 22 1 2.4116 4.8610 -9.6181 23 1 4.3394 6.2022 -10.2227 24 6 5.6001 5.5876 -4.3538 25 6 5.6379 4.1851 -3.6980 26 6 5.8018 1.2381 1.2232 27 6 6.1970 0.5583 -0.0901 28 8 3.4537 -0.7255 0.0021 29 7 2.2868 -1.0424 0.0042 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8878 -0.5178 32 1 -0.3634 -0.8923 -0.5098 33 1 2.0710 2.1742 0.0010 34 1 5.6248 1.1978 -3.0794 35 1 4.1212 0.7505 -2.2383 36 1 4.0513 1.7053 -3.7389 37 1 3.1376 3.7123 -4.2862 38 1 2.4481 3.6425 -2.6462 39 1 1.6852 5.7131 -3.2523 40 1 3.2815 6.1871 -2.6267 41 1 2.3827 5.8696 -5.5042 42 1 3.1684 7.2596 -4.7330 43 1 2.6580 7.4498 -7.9518 44 1 5.5254 6.3493 -3.5777 45 1 6.5128 5.7441 -4.9287 46 1 6.5988 4.0441 -3.2031 47 1 5.5132 3.4234 -4.4677 48 1 6.3710 2.1168 1.5265 49 1 5.4537 0.5998 2.0352 50 1 6.1087 -0.5269 -0.1415 51 1 7.0260 0.9896 -0.6511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948710532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:53 Heat of formation + Delta-G solvation = 82.495762 kcal Electronic energy + Delta-G solvation = -32400.267213 eV Core-core repulsion = 28304.997718 eV Total energy + Delta-G solvation = -4095.269495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.18491 -40.57963 -38.27233 -36.72048 -35.41429 -35.01122 -32.88653 -31.78912 -31.62045 -30.34612 -28.93082 -26.94285 -26.29600 -25.21724 -23.92458 -23.50258 -23.15342 -22.67143 -21.04456 -19.57139 -19.25140 -18.98220 -17.89341 -17.79932 -16.84604 -16.67305 -16.14578 -15.59693 -15.14843 -14.79916 -14.62779 -14.05020 -13.90863 -13.63175 -13.59651 -13.54965 -13.39201 -13.24284 -13.05383 -12.83155 -12.64202 -12.51324 -12.28490 -11.98682 -11.91839 -11.59739 -11.45524 -11.32557 -11.21611 -11.09290 -10.89256 -10.60693 -10.50513 -10.25910 -10.22130 -10.18564 -9.88359 -9.78452 -9.69430 -9.60134 -9.35190 -8.54964 -8.43875 -6.60952 -5.79679 -3.29842 1.13906 1.98023 2.16798 2.80370 3.04435 3.33694 3.40472 3.42093 3.43317 3.93837 3.95725 4.23656 4.44015 4.46972 4.51195 4.79672 4.98541 5.11024 5.17982 5.20991 5.23713 5.28020 5.28985 5.34429 5.39354 5.47384 5.50369 5.52424 5.57894 5.61565 5.71093 5.73999 5.77185 5.88054 5.99268 6.00296 6.15949 6.30124 6.43518 6.51033 6.61104 6.72787 6.78151 6.82142 6.89220 6.96234 7.41110 7.44857 7.70762 7.80854 8.01387 8.11229 8.48417 9.23558 9.88274 10.36551 11.27125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003056 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.485566 B = 9161.024405 C = 9824.010956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.215 4.215 4 C 0.015 3.985 5 C -0.091 4.091 6 C 0.556 3.444 7 O -0.530 6.530 8 N -0.598 5.598 9 C 0.079 3.921 10 C 0.155 3.845 11 H 0.089 0.911 12 C -0.108 4.108 13 C -0.141 4.141 14 C 0.180 3.820 15 N -0.589 5.589 16 C -0.260 4.260 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.163 3.837 25 C -0.153 4.153 26 C -0.126 4.126 27 C -0.146 4.146 28 O 0.100 5.900 29 N -0.365 5.365 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.034 0.966 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.117 0.883 49 H 0.107 0.893 50 H 0.113 0.887 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -13.687 15.627 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C -0.236 4.236 4 C -0.049 4.049 5 C -0.095 4.095 6 C 0.342 3.658 7 O -0.407 6.407 8 N -0.329 5.329 9 C -0.065 4.065 10 C 0.054 3.946 11 H 0.107 0.893 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.055 3.945 15 N -0.310 5.310 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.034 3.966 25 C -0.194 4.194 26 C -0.164 4.164 27 C -0.184 4.184 28 O 0.034 5.966 29 N -0.070 5.070 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.188 0.812 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.135 0.865 49 H 0.126 0.874 50 H 0.132 0.868 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.107 -14.326 15.834 21.354 hybrid contribution -0.322 0.367 -1.071 1.177 sum -0.215 -13.960 14.763 20.319 Atomic orbital electron populations 1.20192 0.85734 1.04063 1.03423 1.23580 0.99129 0.88537 1.02371 1.22367 0.90850 1.01333 1.09085 1.22764 0.95488 0.83605 1.03022 1.19428 0.87711 0.95385 1.07019 1.18882 0.76931 0.87837 0.82189 1.90712 1.49767 1.34795 1.65397 1.48244 1.70135 1.08466 1.06051 1.21776 1.01958 0.85847 0.96883 1.20271 0.96134 0.83101 0.95104 0.89343 1.21273 0.94005 0.98081 1.01321 1.21996 0.99784 0.95122 1.01174 1.20986 0.87458 0.95803 0.90292 1.43639 1.04577 1.75978 1.06819 1.19185 1.23513 1.13466 0.82883 0.91944 1.25173 1.00612 0.95468 0.97744 1.70040 1.33973 1.17876 1.32689 0.86271 0.77390 0.78499 0.84873 1.20272 1.21639 1.21656 1.20592 0.91503 0.91667 0.92886 1.21864 0.96213 1.03251 0.98102 1.23186 0.99015 1.03365 0.90838 1.23228 0.94594 0.99904 1.00627 1.84797 1.21832 1.21988 1.67965 1.73850 0.89081 1.23750 1.20317 0.90116 0.89737 0.90439 0.81234 0.92327 0.92142 0.90092 0.90407 0.93576 0.92697 0.93374 0.91240 0.95580 0.93705 0.94750 0.93174 0.93122 0.91656 0.86508 0.87425 0.86829 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.47 36.01 0.38 -0.24 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.35 16 3 C -0.21 -2.49 10.61 -39.38 -0.42 -2.91 16 4 C 0.01 0.17 4.80 -35.30 -0.17 0.00 16 5 C -0.09 -0.99 1.44 -156.81 -0.23 -1.22 16 6 C 0.56 7.83 6.55 -10.99 -0.07 7.75 16 7 O -0.53 -9.19 16.02 5.55 0.09 -9.10 16 8 N -0.60 -8.31 2.59 -177.48 -0.46 -8.77 16 9 C 0.08 0.93 9.01 59.85 0.54 1.47 16 10 C 0.15 2.52 1.94 -70.99 -0.14 2.38 16 11 H 0.09 1.60 6.03 -51.93 -0.31 1.29 16 12 C -0.11 -1.84 4.37 -28.02 -0.12 -1.97 16 13 C -0.14 -2.61 5.71 -27.30 -0.16 -2.76 16 14 C 0.18 4.13 4.64 -2.94 -0.01 4.11 16 15 N -0.59 -13.90 2.25 -172.02 -0.39 -14.29 16 16 C -0.26 -6.79 9.41 -15.05 -0.14 -6.93 16 17 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 18 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 19 N -0.90 -25.45 11.08 55.49 0.61 -24.83 16 20 Si 0.90 21.11 29.57 -169.99 -5.03 16.09 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 C 0.16 3.28 5.65 -4.04 -0.02 3.26 16 25 C -0.15 -2.61 4.89 -28.58 -0.14 -2.75 16 26 C -0.13 -1.12 9.76 -26.70 -0.26 -1.39 16 27 C -0.15 -1.20 9.72 -26.69 -0.26 -1.46 16 28 O 0.10 1.18 10.96 17.17 0.19 1.37 16 29 N -0.36 -4.56 12.07 33.42 0.40 -4.16 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 5.42 -51.93 -0.28 0.39 16 36 H 0.08 1.02 7.22 -51.93 -0.37 0.65 16 37 H 0.08 1.48 7.20 -51.93 -0.37 1.10 16 38 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 41 H 0.07 1.78 6.57 -51.93 -0.34 1.44 16 42 H 0.03 0.66 7.98 -51.93 -0.41 0.25 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.17 7.59 -51.93 -0.39 0.77 16 48 H 0.12 1.08 8.02 -51.93 -0.42 0.66 16 49 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 0.78 8.00 -51.93 -0.42 0.37 16 51 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -30.37 401.93 -8.74 -39.11 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.31 Total: 1.37 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.91 Total: -2.84 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.17 Total: -52.05 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.28 Total: -7.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.37 -8.74 -39.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948710532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.605 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds