Wall clock time and date at job start Wed Apr 1 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41379 * 126.80487 * 2 1 4 4 C 1.35448 * 103.98416 * 180.16847 * 3 2 1 5 5 C 1.50703 * 126.77724 * 179.91084 * 4 3 2 6 6 C 1.50695 * 115.54590 * 328.98562 * 5 4 3 7 7 O 1.21289 * 119.99891 * 113.34746 * 6 5 4 8 8 N 1.34776 * 120.00246 * 293.34757 * 6 5 4 9 9 C 1.46497 * 120.00124 * 355.46708 * 8 6 5 10 10 C 1.46501 * 119.99702 * 175.47528 * 8 6 5 11 11 H 1.09000 * 108.32360 * 2.37929 * 10 8 6 12 12 C 1.52567 * 108.50968 * 244.76413 * 10 8 6 13 13 C 1.50884 * 109.35791 * 153.73201 * 12 10 8 14 14 C 1.53951 * 110.09673 * 91.89043 * 13 12 10 15 15 N 1.47600 * 112.13851 * 319.43825 * 14 13 12 16 16 C 1.36939 * 118.64757 * 137.86661 * 15 14 13 17 17 H 1.07994 * 120.00652 * 211.49352 * 16 15 14 18 18 C 1.38824 * 119.99555 * 31.49479 * 16 15 14 19 19 N 1.31620 * 119.99882 * 11.01850 * 18 16 15 20 20 Si 1.86792 * 119.99836 * 191.01810 * 18 16 15 21 21 H 1.48500 * 109.47337 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47118 * 119.99947 * 20 18 16 23 23 H 1.48502 * 109.46949 * 239.99862 * 20 18 16 24 24 C 1.44666 * 122.54498 * 317.85421 * 15 14 13 25 25 C 1.47095 * 108.51398 * 119.99976 * 10 8 6 26 26 C 1.52999 * 117.50049 * 114.66078 * 5 4 3 27 27 C 1.53002 * 117.49991 * 183.31927 * 5 4 3 28 28 O 1.34042 * 106.44783 * 359.64307 * 4 3 2 29 29 N 1.20918 * 111.56696 * 0.24376 * 28 4 3 30 30 H 1.09003 * 109.47052 * 270.26111 * 1 2 3 31 31 H 1.09005 * 109.47037 * 30.25211 * 1 2 3 32 32 H 1.08998 * 109.47420 * 150.25871 * 1 2 3 33 33 H 1.07994 * 128.00526 * 0.06731 * 3 2 1 34 34 H 1.08997 * 109.47712 * 275.22692 * 9 8 6 35 35 H 1.08999 * 109.46608 * 35.23122 * 9 8 6 36 36 H 1.09004 * 109.46727 * 155.22098 * 9 8 6 37 37 H 1.09005 * 109.49312 * 273.69823 * 12 10 8 38 38 H 1.09002 * 109.49452 * 33.76611 * 12 10 8 39 39 H 1.08999 * 109.36595 * 212.07928 * 13 12 10 40 40 H 1.09000 * 109.36445 * 331.82348 * 13 12 10 41 41 H 1.08997 * 108.94731 * 80.11904 * 14 13 12 42 42 H 1.08994 * 108.94808 * 198.75200 * 14 13 12 43 43 H 0.97002 * 119.99744 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.61414 * 330.84708 * 24 15 14 45 45 H 1.08995 * 109.32661 * 210.89843 * 24 15 14 46 46 H 1.08996 * 109.32726 * 304.31020 * 25 10 8 47 47 H 1.09006 * 109.32777 * 63.96188 * 25 10 8 48 48 H 1.09000 * 117.49758 * 215.00433 * 26 5 4 49 49 H 1.08998 * 117.49754 * 0.02562 * 26 5 4 50 50 H 1.09005 * 117.49834 * 359.97392 * 27 5 4 51 51 H 1.08992 * 117.49725 * 144.97193 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0039 5 6 4.9022 1.3693 -0.0075 6 6 4.8710 2.7034 -0.7075 7 8 5.0114 3.7260 -0.0705 8 7 4.6869 2.7604 -2.0414 9 6 4.6166 1.5244 -2.8246 10 6 4.5573 4.0585 -2.7081 11 1 4.6798 4.8417 -1.9600 12 6 3.1527 4.1639 -3.2942 13 6 2.7613 5.6175 -3.3968 14 6 3.1415 6.1711 -4.7821 15 7 4.4571 5.6792 -5.2358 16 6 4.5994 5.2952 -6.5425 17 1 5.2911 4.5074 -6.8016 18 6 3.8546 5.9188 -7.5342 19 7 3.1788 7.0143 -7.2590 20 14 3.8113 5.2032 -9.2591 21 1 4.6481 3.9774 -9.3076 22 1 2.4116 4.8610 -9.6181 23 1 4.3394 6.2022 -10.2227 24 6 5.6001 5.5876 -4.3538 25 6 5.6379 4.1851 -3.6980 26 6 5.8018 1.2381 1.2232 27 6 6.1970 0.5583 -0.0901 28 8 3.4537 -0.7255 0.0021 29 7 2.2868 -1.0424 0.0042 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8878 -0.5178 32 1 -0.3634 -0.8923 -0.5098 33 1 2.0710 2.1742 0.0010 34 1 5.6248 1.1978 -3.0794 35 1 4.1212 0.7505 -2.2383 36 1 4.0513 1.7053 -3.7389 37 1 3.1376 3.7123 -4.2862 38 1 2.4481 3.6425 -2.6462 39 1 1.6852 5.7131 -3.2523 40 1 3.2815 6.1871 -2.6267 41 1 2.3827 5.8696 -5.5042 42 1 3.1684 7.2596 -4.7330 43 1 2.6580 7.4498 -7.9518 44 1 5.5254 6.3493 -3.5777 45 1 6.5128 5.7441 -4.9287 46 1 6.5988 4.0441 -3.2031 47 1 5.5132 3.4234 -4.4677 48 1 6.3710 2.1168 1.5265 49 1 5.4537 0.5998 2.0352 50 1 6.1087 -0.5269 -0.1415 51 1 7.0260 0.9896 -0.6511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948710532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:52 Heat of formation + Delta-G solvation = 67.452743 kcal Electronic energy + Delta-G solvation = -32400.919527 eV Core-core repulsion = 28304.997718 eV Total energy + Delta-G solvation = -4095.921810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.04602 -41.69359 -39.61380 -37.77127 -36.85126 -35.82206 -34.52821 -33.31696 -32.61443 -32.03331 -29.64048 -28.15396 -27.81632 -26.50915 -25.48062 -24.68314 -24.28933 -23.43405 -22.11100 -21.08525 -20.75222 -19.98446 -18.83438 -18.69877 -18.55193 -17.76387 -17.36347 -16.98709 -16.51438 -15.96495 -15.76669 -15.59790 -15.27503 -15.12426 -14.83121 -14.37052 -14.25287 -14.23997 -14.09917 -14.04469 -13.93550 -13.64874 -13.42220 -13.31378 -13.12822 -12.97759 -12.75758 -12.56400 -12.41215 -12.34112 -12.21994 -12.04436 -11.97939 -11.86433 -11.74546 -11.55812 -11.40561 -11.35152 -11.02398 -10.87254 -10.47485 -10.23301 -9.72349 -8.56899 -7.82632 -5.35452 0.28838 1.14149 1.17344 1.46563 1.49264 1.58451 1.76192 2.09782 2.52715 2.62030 3.14766 3.18330 3.32086 3.33745 3.65883 3.68696 3.77474 3.81227 3.99368 4.08759 4.13634 4.19818 4.33566 4.42766 4.43899 4.46611 4.56641 4.58640 4.64906 4.65449 4.68758 4.73550 4.79083 4.82397 4.83970 4.90248 4.95962 4.99148 5.10614 5.13307 5.15351 5.18103 5.23613 5.30000 5.46082 5.54461 5.57501 5.71270 5.80848 6.31581 6.46003 7.00705 7.17041 7.22228 7.95640 8.38548 9.22169 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003056 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.485566 B = 9161.024405 C = 9824.010956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 C -0.230 4.230 4 C 0.022 3.978 5 C -0.107 4.107 6 C 0.558 3.442 7 O -0.567 6.567 8 N -0.596 5.596 9 C 0.079 3.921 10 C 0.162 3.838 11 H 0.073 0.927 12 C -0.097 4.097 13 C -0.129 4.129 14 C 0.192 3.808 15 N -0.601 5.601 16 C -0.261 4.261 17 H 0.066 0.934 18 C -0.044 4.044 19 N -0.935 5.935 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.295 1.295 24 C 0.158 3.842 25 C -0.134 4.134 26 C -0.121 4.121 27 C -0.125 4.125 28 O 0.100 5.900 29 N -0.386 5.386 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.038 0.962 42 H -0.007 1.007 43 H 0.248 0.752 44 H 0.035 0.965 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.132 0.868 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -16.116 16.587 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C -0.252 4.252 4 C -0.042 4.042 5 C -0.112 4.112 6 C 0.345 3.655 7 O -0.446 6.446 8 N -0.327 5.327 9 C -0.063 4.063 10 C 0.060 3.940 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.169 4.169 14 C 0.067 3.933 15 N -0.323 5.323 16 C -0.392 4.392 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.581 5.581 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.222 1.222 24 C 0.031 3.969 25 C -0.175 4.175 26 C -0.158 4.158 27 C -0.162 4.162 28 O 0.035 5.965 29 N -0.092 5.092 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.185 0.815 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.011 0.989 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.130 0.870 49 H 0.141 0.859 50 H 0.150 0.850 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.769 -16.801 16.811 23.780 hybrid contribution -0.479 1.157 -1.315 1.816 sum 0.290 -15.644 15.496 22.022 Atomic orbital electron populations 1.20335 0.83833 1.04771 1.04578 1.24027 1.00427 0.88012 1.01213 1.22462 0.91345 1.01422 1.09955 1.22791 0.95521 0.83581 1.02318 1.19260 0.88776 0.94376 1.08789 1.19289 0.75729 0.88599 0.81838 1.90695 1.51342 1.36465 1.66069 1.48160 1.69995 1.08134 1.06366 1.21882 1.03134 0.84978 0.96319 1.19946 0.95332 0.84275 0.94437 0.90839 1.21131 0.95012 0.96725 1.00651 1.21837 1.00836 0.96066 0.98114 1.20708 0.86681 0.93934 0.91950 1.43815 1.05688 1.76023 1.06785 1.19479 1.22761 1.12928 0.83993 0.91638 1.25871 1.00965 0.95960 1.01166 1.70202 1.35156 1.19335 1.33420 0.85296 0.77112 0.77987 0.80591 1.18887 1.21947 1.22216 1.20715 0.90020 0.93763 0.92443 1.21593 0.97431 1.00524 0.97919 1.23295 0.97847 1.03512 0.91174 1.23396 0.92618 1.00649 0.99565 1.84775 1.21675 1.21914 1.68098 1.73841 0.89456 1.24362 1.21588 0.88680 0.88764 0.89971 0.81474 0.90448 0.91224 0.90904 0.92224 0.91940 0.91127 0.92925 0.94324 0.98933 0.94309 0.94637 0.93776 0.91400 0.92055 0.87009 0.85914 0.84966 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.47 71.24 0.75 -0.36 16 2 C 0.02 0.45 7.33 43.58 0.32 0.77 16 3 C -0.23 -5.00 10.61 22.40 0.24 -4.76 16 4 C 0.02 0.45 4.80 25.04 0.12 0.57 16 5 C -0.11 -2.10 1.44 -53.67 -0.08 -2.18 16 6 C 0.56 14.75 6.55 87.66 0.57 15.32 16 7 O -0.57 -19.09 16.02 -3.06 -0.05 -19.14 16 8 N -0.60 -15.47 2.59 -833.82 -2.16 -17.63 16 9 C 0.08 1.68 9.01 127.77 1.15 2.84 16 10 C 0.16 5.09 1.94 43.01 0.08 5.17 16 11 H 0.07 2.60 6.03 -2.39 -0.01 2.58 16 12 C -0.10 -3.20 4.37 29.76 0.13 -3.07 16 13 C -0.13 -4.75 5.71 30.23 0.17 -4.58 16 14 C 0.19 9.11 4.64 86.49 0.40 9.51 16 15 N -0.60 -28.77 2.25 -698.16 -1.57 -30.34 16 16 C -0.26 -13.71 9.41 84.04 0.79 -12.91 16 17 H 0.07 3.35 7.85 -2.91 -0.02 3.33 16 18 C -0.04 -2.39 4.96 84.86 0.42 -1.97 16 19 N -0.94 -54.39 11.08 21.66 0.24 -54.15 16 20 Si 0.96 43.82 29.57 68.60 2.03 45.85 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 C 0.16 6.37 5.65 87.36 0.49 6.86 16 25 C -0.13 -4.38 4.89 29.40 0.14 -4.24 16 26 C -0.12 -1.84 9.76 30.62 0.30 -1.54 16 27 C -0.13 -1.64 9.72 30.62 0.30 -1.35 16 28 O 0.10 2.13 10.96 71.62 0.79 2.92 16 29 N -0.39 -8.97 12.07 -49.56 -0.60 -9.57 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.37 5.42 -2.39 -0.01 1.36 16 36 H 0.07 1.70 7.22 -2.38 -0.02 1.68 16 37 H 0.06 2.23 7.20 -2.38 -0.02 2.21 16 38 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.90 7.32 -2.39 -0.02 1.88 16 41 H 0.04 2.04 6.57 -2.39 -0.02 2.03 16 42 H -0.01 -0.40 7.98 -2.39 -0.02 -0.41 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 45 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.06 2.08 7.59 -2.38 -0.02 2.07 16 48 H 0.11 1.85 8.02 -2.39 -0.02 1.83 16 49 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.13 1.29 8.00 -2.38 -0.02 1.27 16 51 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.56 401.93 5.90 -60.65 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.92 Total: 17.32 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.31 Total: 4.08 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.09 Total: -111.68 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.74 Total: -16.22 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.56 5.90 -60.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948710532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.108 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds