Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30019 * 127.33790 * 2 1 4 4 O 1.20657 * 112.29937 * 180.31295 * 3 2 1 5 5 C 1.33493 * 113.15577 * 359.69315 * 4 3 2 6 6 C 1.50700 * 126.82498 * 180.02562 * 5 4 3 7 7 C 1.37353 * 106.34330 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56632 * 179.97438 * 7 5 4 9 9 O 1.21612 * 119.99586 * 90.00091 * 8 7 5 10 10 N 1.34777 * 120.00283 * 270.28559 * 8 7 5 11 11 C 1.46930 * 120.64042 * 359.43529 * 10 8 7 12 12 C 1.53619 * 108.53666 * 126.33202 * 11 10 8 13 13 C 1.53046 * 109.26241 * 54.86742 * 12 11 10 14 14 C 1.53030 * 109.44144 * 58.57202 * 13 12 11 15 15 C 1.53187 * 109.33756 * 181.23196 * 14 13 12 16 16 N 1.46930 * 108.78143 * 305.37604 * 15 14 13 17 17 C 1.36932 * 120.64321 * 233.61444 * 16 15 14 18 18 H 1.08001 * 120.00038 * 27.68422 * 17 16 15 19 19 C 1.38814 * 120.00036 * 207.69323 * 17 16 15 20 20 N 1.31618 * 120.00241 * 17.35924 * 19 17 16 21 21 Si 1.86802 * 119.99896 * 197.36735 * 19 17 16 22 22 H 1.48501 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47001 * 119.99420 * 21 19 17 24 24 H 1.48492 * 109.47192 * 239.99328 * 21 19 17 25 25 C 1.46929 * 118.71409 * 53.63696 * 16 15 14 26 26 C 1.53048 * 109.39284 * 178.60240 * 13 12 11 27 27 C 1.53036 * 109.54667 * 298.56027 * 13 12 11 28 28 C 1.46927 * 120.64251 * 179.72541 * 10 8 7 29 29 H 1.09000 * 109.47175 * 270.17942 * 1 2 3 30 30 H 1.09005 * 109.46994 * 30.17247 * 1 2 3 31 31 H 1.08994 * 109.47196 * 150.16807 * 1 2 3 32 32 H 1.08997 * 109.47250 * 269.97334 * 6 5 4 33 33 H 1.09007 * 109.46901 * 29.97711 * 6 5 4 34 34 H 1.09000 * 109.46754 * 149.97470 * 6 5 4 35 35 H 1.09004 * 109.58976 * 246.16033 * 11 10 8 36 36 H 1.08998 * 109.59251 * 6.59194 * 11 10 8 37 37 H 1.09004 * 109.63148 * 294.86522 * 12 11 10 38 38 H 1.09002 * 109.42906 * 174.74300 * 12 11 10 39 39 H 1.09000 * 109.49049 * 301.19227 * 14 13 12 40 40 H 1.09001 * 109.48889 * 61.27439 * 14 13 12 41 41 H 1.08995 * 109.58523 * 185.58235 * 15 14 13 42 42 H 1.09003 * 109.70023 * 65.23480 * 15 14 13 43 43 H 0.96998 * 120.00559 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58551 * 186.57334 * 25 16 15 45 45 H 1.08999 * 109.70929 * 66.21446 * 25 16 15 46 46 H 1.08999 * 109.48955 * 298.68619 * 26 13 12 47 47 H 1.08996 * 109.49420 * 58.77342 * 26 13 12 48 48 H 1.08997 * 109.49188 * 301.34382 * 27 13 12 49 49 H 1.08995 * 109.51421 * 181.26874 * 27 13 12 50 50 H 1.08997 * 109.58567 * 353.39392 * 28 10 8 51 51 H 1.08997 * 109.58714 * 113.68614 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0061 5 6 3.6493 -0.6009 -0.0047 6 6 4.9711 -1.3247 -0.0104 7 6 2.3991 -1.1696 0.0041 8 6 2.0399 -2.5992 0.0085 9 8 1.8984 -3.1872 1.0636 10 7 1.8739 -3.2560 -1.1566 11 6 2.0354 -2.5579 -2.4393 12 6 3.0497 -3.3337 -3.2932 13 6 2.5921 -4.7884 -3.4234 14 6 1.2019 -4.8299 -4.0615 15 6 0.7333 -6.2848 -4.1625 16 7 1.7515 -7.0608 -4.8837 17 6 1.4125 -7.8088 -5.9794 18 1 0.5683 -7.5220 -6.5888 19 6 2.1539 -8.9358 -6.3067 20 7 2.9472 -9.4846 -5.4113 21 14 2.0257 -9.6735 -8.0181 22 1 1.0724 -8.8759 -8.8308 23 1 3.3622 -9.6578 -8.6653 24 1 1.5403 -11.0733 -7.9187 25 6 3.1403 -7.0189 -4.4060 26 6 3.5823 -5.5558 -4.3026 27 6 2.5361 -5.4335 -2.0368 28 6 1.5217 -4.6824 -1.1686 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2841 -1.5015 -1.0394 33 1 5.7201 -0.7175 0.4981 34 1 4.8650 -2.2787 0.5061 35 1 1.0762 -2.5151 -2.9554 36 1 2.4026 -1.5471 -2.2617 37 1 4.0297 -3.3018 -2.8170 38 1 3.1111 -2.8818 -4.2832 39 1 0.5022 -4.2643 -3.4462 40 1 1.2462 -4.3920 -5.0587 41 1 -0.2110 -6.3278 -4.7051 42 1 0.5993 -6.6979 -3.1627 43 1 3.4656 -10.2719 -5.6401 44 1 3.7847 -7.5463 -5.1094 45 1 3.2063 -7.4907 -3.4256 46 1 3.6052 -5.1116 -5.2977 47 1 4.5766 -5.5067 -3.8588 48 1 3.5207 -5.3829 -1.5721 49 1 2.2319 -6.4758 -2.1322 50 1 1.5500 -5.0743 -0.1519 51 1 0.5207 -4.8082 -1.5810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957499434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = 41.869751 kcal Electronic energy + Delta-G solvation = -32479.168648 eV Core-core repulsion = 28382.137477 eV Total energy + Delta-G solvation = -4097.031171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.12901 -40.58090 -38.76708 -35.98663 -34.86216 -33.92334 -33.49120 -31.41382 -30.97951 -30.07855 -29.08255 -28.52738 -27.82881 -25.38126 -24.66805 -23.32123 -22.93481 -21.96504 -20.96995 -20.44468 -19.46607 -18.23543 -17.89438 -17.54840 -16.82688 -16.32920 -16.04256 -15.29769 -14.88567 -14.55327 -14.27190 -14.22238 -14.09840 -13.83827 -13.80556 -13.56106 -13.47473 -13.35825 -13.27882 -13.03034 -12.96164 -12.76005 -12.65882 -12.29919 -11.68879 -11.47725 -11.37815 -11.37362 -11.25825 -11.09694 -10.77770 -10.57453 -10.44390 -10.31372 -10.19064 -10.06612 -10.04514 -9.80159 -9.55624 -9.53154 -9.41405 -8.63197 -8.46365 -6.66743 -5.80536 -3.22037 1.04466 1.64714 2.23828 2.54605 2.98029 3.35031 3.43491 3.45197 3.79467 3.96621 4.36004 4.48000 4.63069 4.75481 4.88726 4.94673 4.97549 5.03290 5.11245 5.15934 5.19662 5.26614 5.30025 5.33717 5.36256 5.41763 5.44299 5.56451 5.60307 5.72100 5.72933 5.79603 5.89269 5.96942 6.04192 6.05441 6.16517 6.30729 6.33564 6.49480 6.51291 6.63260 6.66013 6.80701 6.87399 6.97163 7.23045 7.35940 7.66030 7.78509 7.94965 7.95581 8.43602 9.20290 9.84066 10.40452 11.27677 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.002584 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.770901 B =10833.688193 C =10996.267599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.017 3.983 6 C -0.080 4.080 7 C -0.244 4.244 8 C 0.598 3.402 9 O -0.531 6.531 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.123 4.123 13 C -0.046 4.046 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.171 3.829 26 C -0.129 4.129 27 C -0.124 4.124 28 C 0.111 3.889 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.085 0.915 45 H 0.020 0.980 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 18.219 9.256 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.047 4.047 6 C -0.137 4.137 7 C -0.251 4.251 8 C 0.383 3.617 9 O -0.408 6.408 10 N -0.325 5.325 11 C -0.014 4.014 12 C -0.161 4.161 13 C -0.046 4.046 14 C -0.165 4.165 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.045 3.955 26 C -0.168 4.168 27 C -0.161 4.161 28 C -0.010 4.010 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.984 19.041 9.782 21.429 hybrid contribution -0.058 -1.148 -0.958 1.496 sum 0.925 17.893 8.824 19.972 Atomic orbital electron populations 1.20219 0.85163 1.04127 1.03951 1.24747 0.98576 0.86502 1.01052 1.73614 0.89145 1.23329 1.20229 1.84528 1.21478 1.22597 1.68030 1.24615 0.97426 0.83662 0.98961 1.20490 0.88954 0.99446 1.04820 1.21889 0.92876 0.95401 1.14944 1.16920 0.77073 0.83878 0.83783 1.90816 1.51196 1.68011 1.30797 1.48089 1.67881 1.11121 1.05386 1.21895 1.00460 0.95456 0.83628 1.22102 0.98044 0.96492 0.99480 1.20388 0.96658 0.92880 0.94720 1.22149 0.95099 0.99615 0.99594 1.20913 0.92561 0.89483 0.95201 1.44033 1.02335 1.53257 1.31743 1.19214 1.14154 1.03433 1.01196 0.91772 1.25013 1.00768 0.95939 0.97951 1.70036 1.31024 1.21693 1.31932 0.86265 0.77409 0.78753 0.84604 1.20312 1.21615 1.21779 1.20778 0.86382 0.89982 0.98354 1.22223 0.96328 1.00152 0.98134 1.22039 0.98707 1.00892 0.94507 1.21804 0.98970 0.78350 1.01885 0.89604 0.89866 0.89839 0.88538 0.89060 0.88678 0.90663 0.90790 0.91899 0.90849 0.93115 0.92347 0.93192 0.96342 0.93734 0.89709 0.96218 0.92692 0.93511 0.92193 0.88937 0.89246 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.49 36.01 0.38 -0.28 16 2 C 0.05 0.60 7.59 -79.77 -0.61 -0.01 16 3 N -0.36 -4.23 12.01 34.78 0.42 -3.81 16 4 O 0.10 1.04 11.06 18.65 0.21 1.24 16 5 C 0.02 0.17 7.45 -34.63 -0.26 -0.09 16 6 C -0.08 -0.54 10.33 36.01 0.37 -0.17 16 7 C -0.24 -2.85 4.22 -102.89 -0.43 -3.28 16 8 C 0.60 7.95 7.49 -12.53 -0.09 7.86 16 9 O -0.53 -8.86 16.52 5.27 0.09 -8.77 16 10 N -0.59 -7.15 2.97 -173.77 -0.52 -7.66 16 11 C 0.11 1.13 5.90 -3.49 -0.02 1.11 16 12 C -0.12 -1.40 4.92 -26.39 -0.13 -1.53 16 13 C -0.05 -0.66 0.51 -154.43 -0.08 -0.74 16 14 C -0.13 -1.92 4.15 -26.62 -0.11 -2.03 16 15 C 0.14 2.80 6.04 -3.71 -0.02 2.77 16 16 N -0.59 -13.94 2.99 -172.32 -0.52 -14.45 16 17 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 18 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -25.51 11.19 55.49 0.62 -24.89 16 21 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.17 3.80 4.84 -3.71 -0.02 3.78 16 26 C -0.13 -2.23 4.90 -26.61 -0.13 -2.36 16 27 C -0.12 -1.76 4.14 -26.61 -0.11 -1.87 16 28 C 0.11 1.45 5.96 -3.71 -0.02 1.43 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.08 0.77 6.66 -51.93 -0.35 0.42 16 36 H 0.07 0.72 6.26 -51.93 -0.33 0.40 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.67 4.98 -51.93 -0.26 0.41 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 42 H 0.02 0.36 6.74 -51.93 -0.35 0.01 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.08 2.18 6.04 -51.93 -0.31 1.86 16 45 H 0.02 0.46 6.67 -51.93 -0.35 0.11 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 1.55 4.99 -51.93 -0.26 1.29 16 50 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 51 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -31.23 388.95 -8.33 -39.56 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.94 Total: -1.08 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.23 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.01 Total: -50.82 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.29 Total: -7.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.23 -8.33 -39.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957499434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.430 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds