Wall clock time and date at job start Wed Apr 1 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30019 * 127.33790 * 2 1 4 4 O 1.20657 * 112.29937 * 180.31295 * 3 2 1 5 5 C 1.33493 * 113.15577 * 359.69315 * 4 3 2 6 6 C 1.50700 * 126.82498 * 180.02562 * 5 4 3 7 7 C 1.37353 * 106.34330 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56632 * 179.97438 * 7 5 4 9 9 O 1.21612 * 119.99586 * 90.00091 * 8 7 5 10 10 N 1.34777 * 120.00283 * 270.28559 * 8 7 5 11 11 C 1.46930 * 120.64042 * 359.43529 * 10 8 7 12 12 C 1.53619 * 108.53666 * 126.33202 * 11 10 8 13 13 C 1.53046 * 109.26241 * 54.86742 * 12 11 10 14 14 C 1.53030 * 109.44144 * 58.57202 * 13 12 11 15 15 C 1.53187 * 109.33756 * 181.23196 * 14 13 12 16 16 N 1.46930 * 108.78143 * 305.37604 * 15 14 13 17 17 C 1.36932 * 120.64321 * 233.61444 * 16 15 14 18 18 H 1.08001 * 120.00038 * 27.68422 * 17 16 15 19 19 C 1.38814 * 120.00036 * 207.69323 * 17 16 15 20 20 N 1.31618 * 120.00241 * 17.35924 * 19 17 16 21 21 Si 1.86802 * 119.99896 * 197.36735 * 19 17 16 22 22 H 1.48501 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47001 * 119.99420 * 21 19 17 24 24 H 1.48492 * 109.47192 * 239.99328 * 21 19 17 25 25 C 1.46929 * 118.71409 * 53.63696 * 16 15 14 26 26 C 1.53048 * 109.39284 * 178.60240 * 13 12 11 27 27 C 1.53036 * 109.54667 * 298.56027 * 13 12 11 28 28 C 1.46927 * 120.64251 * 179.72541 * 10 8 7 29 29 H 1.09000 * 109.47175 * 270.17942 * 1 2 3 30 30 H 1.09005 * 109.46994 * 30.17247 * 1 2 3 31 31 H 1.08994 * 109.47196 * 150.16807 * 1 2 3 32 32 H 1.08997 * 109.47250 * 269.97334 * 6 5 4 33 33 H 1.09007 * 109.46901 * 29.97711 * 6 5 4 34 34 H 1.09000 * 109.46754 * 149.97470 * 6 5 4 35 35 H 1.09004 * 109.58976 * 246.16033 * 11 10 8 36 36 H 1.08998 * 109.59251 * 6.59194 * 11 10 8 37 37 H 1.09004 * 109.63148 * 294.86522 * 12 11 10 38 38 H 1.09002 * 109.42906 * 174.74300 * 12 11 10 39 39 H 1.09000 * 109.49049 * 301.19227 * 14 13 12 40 40 H 1.09001 * 109.48889 * 61.27439 * 14 13 12 41 41 H 1.08995 * 109.58523 * 185.58235 * 15 14 13 42 42 H 1.09003 * 109.70023 * 65.23480 * 15 14 13 43 43 H 0.96998 * 120.00559 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58551 * 186.57334 * 25 16 15 45 45 H 1.08999 * 109.70929 * 66.21446 * 25 16 15 46 46 H 1.08999 * 109.48955 * 298.68619 * 26 13 12 47 47 H 1.08996 * 109.49420 * 58.77342 * 26 13 12 48 48 H 1.08997 * 109.49188 * 301.34382 * 27 13 12 49 49 H 1.08995 * 109.51421 * 181.26874 * 27 13 12 50 50 H 1.08997 * 109.58567 * 353.39392 * 28 10 8 51 51 H 1.08997 * 109.58714 * 113.68614 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0061 5 6 3.6493 -0.6009 -0.0047 6 6 4.9711 -1.3247 -0.0104 7 6 2.3991 -1.1696 0.0041 8 6 2.0399 -2.5992 0.0085 9 8 1.8984 -3.1872 1.0636 10 7 1.8739 -3.2560 -1.1566 11 6 2.0354 -2.5579 -2.4393 12 6 3.0497 -3.3337 -3.2932 13 6 2.5921 -4.7884 -3.4234 14 6 1.2019 -4.8299 -4.0615 15 6 0.7333 -6.2848 -4.1625 16 7 1.7515 -7.0608 -4.8837 17 6 1.4125 -7.8088 -5.9794 18 1 0.5683 -7.5220 -6.5888 19 6 2.1539 -8.9358 -6.3067 20 7 2.9472 -9.4846 -5.4113 21 14 2.0257 -9.6735 -8.0181 22 1 1.0724 -8.8759 -8.8308 23 1 3.3622 -9.6578 -8.6653 24 1 1.5403 -11.0733 -7.9187 25 6 3.1403 -7.0189 -4.4060 26 6 3.5823 -5.5558 -4.3026 27 6 2.5361 -5.4335 -2.0368 28 6 1.5217 -4.6824 -1.1686 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2841 -1.5015 -1.0394 33 1 5.7201 -0.7175 0.4981 34 1 4.8650 -2.2787 0.5061 35 1 1.0762 -2.5151 -2.9554 36 1 2.4026 -1.5471 -2.2617 37 1 4.0297 -3.3018 -2.8170 38 1 3.1111 -2.8818 -4.2832 39 1 0.5022 -4.2643 -3.4462 40 1 1.2462 -4.3920 -5.0587 41 1 -0.2110 -6.3278 -4.7051 42 1 0.5993 -6.6979 -3.1627 43 1 3.4656 -10.2719 -5.6401 44 1 3.7847 -7.5463 -5.1094 45 1 3.2063 -7.4907 -3.4256 46 1 3.6052 -5.1116 -5.2977 47 1 4.5766 -5.5067 -3.8588 48 1 3.5207 -5.3829 -1.5721 49 1 2.2319 -6.4758 -2.1322 50 1 1.5500 -5.0743 -0.1519 51 1 0.5207 -4.8082 -1.5810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957499434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:21 Heat of formation + Delta-G solvation = 24.614074 kcal Electronic energy + Delta-G solvation = -32479.916911 eV Core-core repulsion = 28382.137477 eV Total energy + Delta-G solvation = -4097.779434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.93886 -41.69361 -39.99690 -37.39424 -35.70213 -35.09242 -34.55562 -33.02090 -32.13185 -31.59974 -29.84829 -29.63473 -28.80614 -26.81073 -25.83511 -24.67734 -24.01239 -23.42295 -22.21310 -21.41475 -20.53898 -19.29898 -19.01361 -18.66353 -18.15230 -17.51309 -17.01044 -16.79304 -16.26492 -15.79135 -15.60874 -15.28414 -15.24204 -15.05393 -14.85318 -14.62366 -14.55168 -14.40649 -14.30527 -14.02425 -13.91914 -13.56979 -13.41778 -13.38286 -13.15481 -13.03124 -12.88469 -12.73831 -12.56045 -12.24015 -12.14306 -12.10426 -12.07165 -11.73922 -11.67102 -11.33222 -11.16877 -11.06835 -10.91732 -10.86382 -10.46505 -10.36051 -9.69289 -8.59951 -7.83978 -5.27730 0.27025 0.83108 1.24861 1.45731 1.48355 1.57987 1.70175 2.11123 2.52966 3.02663 3.23160 3.29821 3.50641 3.75199 3.78971 3.80826 3.88943 3.92066 4.12737 4.22356 4.27020 4.32785 4.45089 4.47855 4.54827 4.55519 4.58361 4.62684 4.65556 4.71874 4.75444 4.76260 4.83013 4.83448 4.90172 5.02879 5.04547 5.07237 5.08856 5.11867 5.20673 5.31447 5.35518 5.44370 5.51251 5.59277 5.63098 5.70862 5.87913 6.25651 6.42992 6.94677 7.17152 7.19639 7.93114 8.43089 9.21391 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.002584 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.770901 B =10833.688193 C =10996.267599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.375 5.375 4 O 0.092 5.908 5 C 0.033 3.967 6 C -0.082 4.082 7 C -0.270 4.270 8 C 0.604 3.396 9 O -0.571 6.571 10 N -0.586 5.586 11 C 0.111 3.889 12 C -0.114 4.114 13 C -0.041 4.041 14 C -0.112 4.112 15 C 0.140 3.860 16 N -0.608 5.608 17 C -0.257 4.257 18 H 0.064 0.936 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.295 1.295 25 C 0.178 3.822 26 C -0.117 4.117 27 C -0.115 4.115 28 C 0.119 3.881 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.248 0.752 44 H 0.044 0.956 45 H -0.001 1.001 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 20.851 8.841 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 N -0.084 5.084 4 O 0.033 5.967 5 C -0.030 4.030 6 C -0.139 4.139 7 C -0.277 4.277 8 C 0.392 3.608 9 O -0.451 6.451 10 N -0.317 5.317 11 C -0.010 4.010 12 C -0.152 4.152 13 C -0.041 4.041 14 C -0.151 4.151 15 C 0.015 3.985 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.081 0.919 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.222 1.222 25 C 0.053 3.947 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.003 4.003 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.048 21.716 9.350 23.666 hybrid contribution -0.093 -1.994 -0.781 2.144 sum 0.955 19.721 8.568 21.523 Atomic orbital electron populations 1.20338 0.83696 1.05037 1.04525 1.25135 0.99612 0.86096 1.00159 1.73611 0.89529 1.23814 1.21397 1.84517 1.21225 1.22942 1.68045 1.25130 0.98082 0.83272 0.96563 1.20690 0.87916 0.98994 1.06258 1.21772 0.93909 0.94551 1.17490 1.17051 0.76157 0.84342 0.83286 1.90798 1.53031 1.69048 1.32252 1.48084 1.67187 1.10546 1.05913 1.22000 1.00839 0.95751 0.82451 1.22015 0.98736 0.93772 1.00700 1.20320 0.95320 0.94784 0.93656 1.21999 0.96179 0.96610 1.00282 1.21075 0.91580 0.91533 0.94331 1.44294 1.03718 1.53473 1.31734 1.19520 1.13734 1.03425 1.02055 0.91874 1.25715 1.01130 0.96725 1.01089 1.70187 1.32186 1.22140 1.33545 0.85298 0.77241 0.77647 0.80824 1.19161 1.21786 1.22225 1.20564 0.85459 0.92853 0.95831 1.22026 0.97911 0.96709 0.98909 1.21886 0.99138 0.99335 0.94914 1.21625 0.98749 0.78965 1.00955 0.89172 0.88441 0.89399 0.86533 0.86824 0.89472 0.89554 0.89269 0.90768 0.89405 0.90273 0.92439 0.93711 0.96595 0.94305 0.93705 0.98315 0.93029 0.91903 0.91962 0.91973 0.90355 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.49 71.24 0.75 -0.42 16 2 C 0.05 1.06 7.59 45.15 0.34 1.40 16 3 N -0.37 -8.16 12.01 -44.78 -0.54 -8.70 16 4 O 0.09 1.80 11.06 76.98 0.85 2.65 16 5 C 0.03 0.58 7.45 25.48 0.19 0.77 16 6 C -0.08 -0.86 10.33 71.24 0.74 -0.12 16 7 C -0.27 -5.72 4.22 -18.75 -0.08 -5.80 16 8 C 0.60 15.03 7.49 86.66 0.65 15.68 16 9 O -0.57 -18.69 16.52 -4.07 -0.07 -18.76 16 10 N -0.59 -12.70 2.97 -821.95 -2.44 -15.14 16 11 C 0.11 1.91 5.90 86.51 0.51 2.42 16 12 C -0.11 -2.16 4.92 30.82 0.15 -2.00 16 13 C -0.04 -1.07 0.51 -52.13 -0.03 -1.10 16 14 C -0.11 -3.17 4.15 30.67 0.13 -3.05 16 15 C 0.14 5.36 6.04 86.36 0.52 5.88 16 16 N -0.61 -29.16 2.99 -699.10 -2.09 -31.25 16 17 C -0.26 -13.84 9.59 84.03 0.81 -13.03 16 18 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 19 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 20 N -0.93 -54.69 11.19 21.65 0.24 -54.45 16 21 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 C 0.18 8.15 4.84 86.36 0.42 8.57 16 26 C -0.12 -3.90 4.90 30.67 0.15 -3.75 16 27 C -0.11 -3.16 4.14 30.67 0.13 -3.03 16 28 C 0.12 2.93 5.96 86.36 0.51 3.45 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 35 H 0.09 1.36 6.66 -2.39 -0.02 1.34 16 36 H 0.09 1.36 6.26 -2.39 -0.01 1.35 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.83 4.98 -2.39 -0.01 1.81 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 42 H 0.02 0.63 6.74 -2.39 -0.02 0.61 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.04 2.39 6.04 -2.39 -0.01 2.38 16 45 H 0.00 -0.06 6.67 -2.39 -0.02 -0.07 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.06 2.12 4.99 -2.39 -0.01 2.11 16 50 H 0.08 2.15 7.00 -2.39 -0.02 2.14 16 51 H 0.08 1.90 6.74 -2.39 -0.02 1.89 16 Total: -1.00 -69.97 388.95 5.23 -64.74 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.94 Total: 10.98 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.30 Total: 3.44 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -4.83 Total: -109.54 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.78 Total: -16.11 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.97 5.23 -64.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957499434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds