Wall clock time and date at job start Wed Apr 1 2020 04:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30009 * 127.33284 * 2 1 4 4 O 1.20660 * 112.30238 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15219 * 359.71628 * 4 3 2 6 6 C 1.50697 * 126.82622 * 180.31136 * 5 4 3 7 7 C 1.37355 * 106.34239 * 0.44851 * 5 4 3 8 8 C 1.47395 * 128.56267 * 179.85201 * 7 5 4 9 9 O 1.21606 * 120.00201 * 269.67764 * 8 7 5 10 10 N 1.34779 * 119.99779 * 89.68298 * 8 7 5 11 11 C 1.46925 * 120.63076 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.77423 * 233.58539 * 11 10 8 13 13 C 1.53037 * 109.31499 * 305.36620 * 12 11 10 14 14 C 1.53043 * 109.53919 * 61.36673 * 13 12 11 15 15 H 1.09000 * 109.49902 * 58.58363 * 14 13 12 16 16 C 1.52996 * 109.49773 * 178.68399 * 14 13 12 17 17 H 1.09002 * 110.64287 * 61.52522 * 16 14 13 18 18 C 1.55156 * 110.72059 * 184.85792 * 16 14 13 19 19 C 1.54907 * 101.58379 * 153.86501 * 18 16 14 20 20 N 1.47426 * 104.83232 * 322.99590 * 19 18 16 21 21 C 1.36940 * 125.64876 * 204.16291 * 20 19 18 22 22 H 1.07998 * 119.99811 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99758 * 359.96033 * 21 20 19 24 24 N 1.31613 * 120.00441 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99803 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47278 * 89.99116 * 25 23 21 27 27 H 1.48500 * 109.47173 * 209.99695 * 25 23 21 28 28 H 1.48498 * 109.46966 * 329.99301 * 25 23 21 29 29 C 1.47024 * 108.70217 * 24.12383 * 20 19 18 30 30 C 1.46926 * 120.63009 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47434 * 269.95809 * 1 2 3 32 32 H 1.08999 * 109.47210 * 29.96009 * 1 2 3 33 33 H 1.09005 * 109.47032 * 149.95966 * 1 2 3 34 34 H 1.09005 * 109.47062 * 270.16904 * 6 5 4 35 35 H 1.08997 * 109.47386 * 30.16828 * 6 5 4 36 36 H 1.08994 * 109.47493 * 150.17059 * 6 5 4 37 37 H 1.08998 * 109.58340 * 353.37494 * 11 10 8 38 38 H 1.09005 * 109.58474 * 113.79782 * 11 10 8 39 39 H 1.08997 * 109.49512 * 65.31959 * 12 11 10 40 40 H 1.09005 * 109.49659 * 185.37937 * 12 11 10 41 41 H 1.08997 * 109.46383 * 181.38282 * 13 12 11 42 42 H 1.09002 * 109.46010 * 301.35960 * 13 12 11 43 43 H 1.09001 * 111.00498 * 271.94301 * 18 16 14 44 44 H 1.08998 * 111.00280 * 35.78993 * 18 16 14 45 45 H 1.08997 * 110.36906 * 204.15662 * 19 18 16 46 46 H 1.08999 * 110.45797 * 81.87827 * 19 18 16 47 47 H 0.96991 * 120.00399 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.88059 * 239.52521 * 29 20 19 49 49 H 1.08997 * 110.00560 * 118.43381 * 29 20 19 50 50 H 1.09006 * 109.58406 * 246.20036 * 30 10 8 51 51 H 1.09002 * 109.59019 * 6.62024 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 4.9711 -1.3245 0.0128 7 6 2.3992 -1.1696 -0.0005 8 6 2.0402 -2.5991 -0.0009 9 8 1.8916 -3.1886 -1.0541 10 7 1.8764 -3.2530 1.1663 11 6 2.0518 -2.5544 2.4468 12 6 3.0604 -3.3317 3.2984 13 6 2.5964 -4.7838 3.4331 14 6 2.5333 -5.4315 2.0480 15 1 3.5165 -5.3854 1.5796 16 6 2.1009 -6.8925 2.1867 17 1 1.1064 -6.9588 2.6278 18 6 2.1449 -7.6109 0.8122 19 6 2.3622 -9.0844 1.2381 20 7 3.2641 -9.0117 2.4019 21 6 4.0954 -10.0118 2.8310 22 1 4.7205 -9.8593 3.6985 23 6 4.1344 -11.2214 2.1512 24 7 3.3721 -11.4074 1.0946 25 14 5.2679 -12.5858 2.7370 26 1 4.5483 -13.4419 3.7140 27 1 5.6928 -13.4089 1.5763 28 1 6.4637 -11.9913 3.3864 29 6 3.1240 -7.6874 3.0250 30 6 1.5191 -4.6781 1.1822 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8897 -0.5145 34 1 5.2951 -1.5002 -1.0130 35 1 5.7146 -0.7178 0.5297 36 1 4.8598 -2.2790 0.5271 37 1 2.4265 -1.5471 2.2651 38 1 1.0962 -2.5024 2.9686 39 1 4.0386 -3.3053 2.8183 40 1 3.1280 -2.8776 4.2871 41 1 3.2995 -5.3331 4.0591 42 1 1.6073 -4.8080 3.8905 43 1 1.2013 -7.4932 0.2794 44 1 2.9792 -7.2512 0.2099 45 1 2.8296 -9.6477 0.4305 46 1 1.4145 -9.5429 1.5206 47 1 3.3990 -12.2528 0.6199 48 1 4.0850 -7.1730 3.0225 49 1 2.7629 -7.7930 4.0480 50 1 0.5200 -4.7996 1.6007 51 1 1.5422 -5.0721 0.1661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961105536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:25 Heat of formation + Delta-G solvation = 40.570185 kcal Electronic energy + Delta-G solvation = -31643.019171 eV Core-core repulsion = 27545.931646 eV Total energy + Delta-G solvation = -4097.087525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.18644 -40.39804 -38.35935 -36.71108 -34.93600 -34.03349 -33.48570 -32.36597 -31.16687 -29.16852 -28.96078 -28.49906 -27.27312 -25.90606 -24.80535 -23.74033 -22.84418 -21.25301 -20.54165 -19.98211 -19.41095 -19.28121 -18.20305 -17.76164 -16.85414 -16.70551 -16.14165 -15.58267 -15.02165 -14.66868 -14.49908 -14.22804 -14.10771 -13.88685 -13.82324 -13.78436 -13.53886 -13.44880 -13.18190 -13.06608 -13.00056 -12.73882 -12.44146 -12.21132 -11.85839 -11.58068 -11.43820 -11.33540 -11.10852 -11.04098 -10.92775 -10.83888 -10.62420 -10.43811 -10.16270 -10.09516 -9.98718 -9.84740 -9.70950 -9.61456 -9.40729 -8.81323 -8.62156 -6.79731 -5.62564 -3.04195 0.98685 1.58597 2.17350 2.47167 2.88096 3.40621 3.45325 3.47570 3.72984 3.91017 4.27428 4.50037 4.53998 4.57339 4.73990 4.77884 4.85879 4.92065 5.00897 5.05170 5.09618 5.10307 5.19414 5.23325 5.31065 5.38622 5.47461 5.51953 5.51990 5.58239 5.61930 5.66542 5.69749 5.75391 5.90191 5.96876 5.99934 6.04696 6.24276 6.27546 6.42265 6.43385 6.63610 6.67552 6.79821 7.00288 7.11995 7.56625 7.65825 7.87939 7.89881 7.90108 8.40338 9.25103 9.86466 10.51966 11.41149 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.002305 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.949639 B =12145.033522 C =12232.820569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.018 3.982 6 C -0.081 4.081 7 C -0.246 4.246 8 C 0.598 3.402 9 O -0.523 6.523 10 N -0.598 5.598 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.086 4.086 15 H 0.075 0.925 16 C -0.092 4.092 17 H 0.071 0.929 18 C -0.140 4.140 19 C 0.152 3.848 20 N -0.605 5.605 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.146 3.854 30 C 0.117 3.883 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.021 0.979 49 H 0.017 0.983 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 24.523 1.608 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.045 4.045 6 C -0.138 4.138 7 C -0.253 4.253 8 C 0.384 3.616 9 O -0.398 6.398 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.179 4.179 19 C 0.027 3.973 20 N -0.331 5.331 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.571 5.571 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.020 3.980 30 C -0.004 4.004 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.035 0.965 50 H 0.088 0.912 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.297 25.294 0.988 25.527 hybrid contribution 0.402 -1.456 0.443 1.574 sum -2.895 23.838 1.431 24.056 Atomic orbital electron populations 1.20229 0.85152 1.04382 1.03769 1.24741 0.98575 0.86473 1.01081 1.73616 0.89147 1.23333 1.20193 1.84535 1.21458 1.22587 1.68013 1.24641 0.97439 0.83656 0.98769 1.20500 0.88920 0.99287 1.05067 1.21879 0.92901 0.95342 1.15186 1.16922 0.77043 0.83899 0.83751 1.90847 1.50363 1.67749 1.30874 1.48072 1.68367 1.11259 1.05352 1.21751 0.99931 0.95800 0.83948 1.21932 0.98881 0.96569 0.99815 1.21626 1.02052 0.94418 0.97364 1.21501 0.99302 0.94569 0.95186 0.90649 1.22131 0.99189 0.91836 0.98041 0.91101 1.23067 1.00093 0.99635 0.95085 1.21906 0.92864 0.90432 0.92104 1.44523 1.47106 1.10568 1.30940 1.19068 1.15067 0.91636 1.09241 0.90612 1.24788 0.99991 0.97913 0.98074 1.69806 1.42123 1.24336 1.20802 0.86092 0.80090 0.81971 0.77464 1.21678 1.21664 1.20742 1.21256 0.95170 0.87192 0.94424 1.21813 0.97932 0.77915 1.02778 0.89645 0.89875 0.89701 0.88457 0.88970 0.88714 0.90458 0.91041 0.91467 0.90646 0.90776 0.91743 0.92493 0.92184 0.87794 0.97191 0.93768 0.96103 0.96476 0.91180 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.49 36.01 0.38 -0.22 16 2 C 0.05 0.56 7.59 -79.77 -0.61 -0.04 16 3 N -0.36 -3.99 12.01 34.78 0.42 -3.57 16 4 O 0.10 0.98 11.06 18.64 0.21 1.19 16 5 C 0.02 0.17 7.43 -34.63 -0.26 -0.09 16 6 C -0.08 -0.52 10.33 36.00 0.37 -0.15 16 7 C -0.25 -2.71 4.23 -102.90 -0.44 -3.14 16 8 C 0.60 7.64 7.49 -12.53 -0.09 7.55 16 9 O -0.52 -8.70 16.52 5.27 0.09 -8.61 16 10 N -0.60 -6.55 2.97 -174.06 -0.52 -7.07 16 11 C 0.11 0.90 6.34 -3.71 -0.02 0.87 16 12 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 13 C -0.12 -1.22 4.98 -26.69 -0.13 -1.35 16 14 C -0.09 -1.10 1.71 -90.52 -0.15 -1.26 16 15 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 16 C -0.09 -1.50 2.49 -88.79 -0.22 -1.73 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 18 C -0.14 -2.63 5.73 -24.58 -0.14 -2.77 16 19 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 20 N -0.61 -15.51 3.39 -170.08 -0.58 -16.09 16 21 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 24 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 25 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 C 0.15 2.94 5.84 -3.07 -0.02 2.92 16 30 C 0.12 1.42 5.45 -3.73 -0.02 1.40 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.08 0.61 6.25 -51.93 -0.32 0.28 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 45 H 0.10 2.88 5.87 -51.93 -0.31 2.57 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.10 1.40 6.51 -51.93 -0.34 1.06 16 LS Contribution 402.46 15.07 6.07 6.07 Total: -1.00 -33.43 402.46 -9.02 -42.45 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.46 Total: -2.54 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.78 Total: -2.38 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.12 Total: -53.28 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.29 Total: -7.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.43 -9.02 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961105536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.022 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds