Wall clock time and date at job start Wed Apr 1 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30009 * 127.33284 * 2 1 4 4 O 1.20660 * 112.30238 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15219 * 359.71628 * 4 3 2 6 6 C 1.50697 * 126.82622 * 180.31136 * 5 4 3 7 7 C 1.37355 * 106.34239 * 0.44851 * 5 4 3 8 8 C 1.47395 * 128.56267 * 179.85201 * 7 5 4 9 9 O 1.21606 * 120.00201 * 269.67764 * 8 7 5 10 10 N 1.34779 * 119.99779 * 89.68298 * 8 7 5 11 11 C 1.46925 * 120.63076 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.77423 * 233.58539 * 11 10 8 13 13 C 1.53037 * 109.31499 * 305.36620 * 12 11 10 14 14 C 1.53043 * 109.53919 * 61.36673 * 13 12 11 15 15 H 1.09000 * 109.49902 * 58.58363 * 14 13 12 16 16 C 1.52996 * 109.49773 * 178.68399 * 14 13 12 17 17 H 1.09002 * 110.64287 * 61.52522 * 16 14 13 18 18 C 1.55156 * 110.72059 * 184.85792 * 16 14 13 19 19 C 1.54907 * 101.58379 * 153.86501 * 18 16 14 20 20 N 1.47426 * 104.83232 * 322.99590 * 19 18 16 21 21 C 1.36940 * 125.64876 * 204.16291 * 20 19 18 22 22 H 1.07998 * 119.99811 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99758 * 359.96033 * 21 20 19 24 24 N 1.31613 * 120.00441 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99803 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47278 * 89.99116 * 25 23 21 27 27 H 1.48500 * 109.47173 * 209.99695 * 25 23 21 28 28 H 1.48498 * 109.46966 * 329.99301 * 25 23 21 29 29 C 1.47024 * 108.70217 * 24.12383 * 20 19 18 30 30 C 1.46926 * 120.63009 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47434 * 269.95809 * 1 2 3 32 32 H 1.08999 * 109.47210 * 29.96009 * 1 2 3 33 33 H 1.09005 * 109.47032 * 149.95966 * 1 2 3 34 34 H 1.09005 * 109.47062 * 270.16904 * 6 5 4 35 35 H 1.08997 * 109.47386 * 30.16828 * 6 5 4 36 36 H 1.08994 * 109.47493 * 150.17059 * 6 5 4 37 37 H 1.08998 * 109.58340 * 353.37494 * 11 10 8 38 38 H 1.09005 * 109.58474 * 113.79782 * 11 10 8 39 39 H 1.08997 * 109.49512 * 65.31959 * 12 11 10 40 40 H 1.09005 * 109.49659 * 185.37937 * 12 11 10 41 41 H 1.08997 * 109.46383 * 181.38282 * 13 12 11 42 42 H 1.09002 * 109.46010 * 301.35960 * 13 12 11 43 43 H 1.09001 * 111.00498 * 271.94301 * 18 16 14 44 44 H 1.08998 * 111.00280 * 35.78993 * 18 16 14 45 45 H 1.08997 * 110.36906 * 204.15662 * 19 18 16 46 46 H 1.08999 * 110.45797 * 81.87827 * 19 18 16 47 47 H 0.96991 * 120.00399 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.88059 * 239.52521 * 29 20 19 49 49 H 1.08997 * 110.00560 * 118.43381 * 29 20 19 50 50 H 1.09006 * 109.58406 * 246.20036 * 30 10 8 51 51 H 1.09002 * 109.59019 * 6.62024 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 4.9711 -1.3245 0.0128 7 6 2.3992 -1.1696 -0.0005 8 6 2.0402 -2.5991 -0.0009 9 8 1.8916 -3.1886 -1.0541 10 7 1.8764 -3.2530 1.1663 11 6 2.0518 -2.5544 2.4468 12 6 3.0604 -3.3317 3.2984 13 6 2.5964 -4.7838 3.4331 14 6 2.5333 -5.4315 2.0480 15 1 3.5165 -5.3854 1.5796 16 6 2.1009 -6.8925 2.1867 17 1 1.1064 -6.9588 2.6278 18 6 2.1449 -7.6109 0.8122 19 6 2.3622 -9.0844 1.2381 20 7 3.2641 -9.0117 2.4019 21 6 4.0954 -10.0118 2.8310 22 1 4.7205 -9.8593 3.6985 23 6 4.1344 -11.2214 2.1512 24 7 3.3721 -11.4074 1.0946 25 14 5.2679 -12.5858 2.7370 26 1 4.5483 -13.4419 3.7140 27 1 5.6928 -13.4089 1.5763 28 1 6.4637 -11.9913 3.3864 29 6 3.1240 -7.6874 3.0250 30 6 1.5191 -4.6781 1.1822 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8897 -0.5145 34 1 5.2951 -1.5002 -1.0130 35 1 5.7146 -0.7178 0.5297 36 1 4.8598 -2.2790 0.5271 37 1 2.4265 -1.5471 2.2651 38 1 1.0962 -2.5024 2.9686 39 1 4.0386 -3.3053 2.8183 40 1 3.1280 -2.8776 4.2871 41 1 3.2995 -5.3331 4.0591 42 1 1.6073 -4.8080 3.8905 43 1 1.2013 -7.4932 0.2794 44 1 2.9792 -7.2512 0.2099 45 1 2.8296 -9.6477 0.4305 46 1 1.4145 -9.5429 1.5206 47 1 3.3990 -12.2528 0.6199 48 1 4.0850 -7.1730 3.0225 49 1 2.7629 -7.7930 4.0480 50 1 0.5200 -4.7996 1.6007 51 1 1.5422 -5.0721 0.1661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961105536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:24 Heat of formation + Delta-G solvation = 21.447567 kcal Electronic energy + Delta-G solvation = -31643.848390 eV Core-core repulsion = 27545.931646 eV Total energy + Delta-G solvation = -4097.916744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.95635 -41.36689 -39.68588 -38.01328 -35.75446 -35.16186 -34.56656 -33.56482 -32.54516 -30.68412 -29.82509 -29.34935 -28.60156 -26.81247 -26.51462 -24.79561 -23.85873 -22.35820 -21.72035 -21.32372 -20.72187 -20.16137 -19.01984 -18.85606 -18.55592 -17.61851 -17.08192 -16.90097 -16.50578 -16.00752 -15.63075 -15.37237 -15.26800 -14.95002 -14.67165 -14.41909 -14.36288 -14.25520 -14.11608 -14.02609 -13.85973 -13.63445 -13.59004 -13.43214 -13.39452 -13.26884 -12.85677 -12.72910 -12.44977 -12.17720 -12.09701 -12.08511 -11.97469 -11.79880 -11.67012 -11.49742 -11.32417 -11.20018 -11.00192 -10.89916 -10.72483 -10.39043 -9.73522 -8.86156 -7.76039 -5.20363 0.24224 0.81589 1.23403 1.46066 1.48240 1.56918 1.67201 2.08788 2.50513 3.01378 3.20864 3.33173 3.48655 3.65544 3.73821 3.80138 3.87028 3.92148 4.05888 4.18448 4.19892 4.23916 4.37207 4.42030 4.47230 4.52389 4.56361 4.57546 4.59655 4.61849 4.73505 4.73942 4.77903 4.84354 4.88796 4.92230 4.98337 5.03384 5.06646 5.10669 5.16662 5.20660 5.35922 5.40223 5.47037 5.50163 5.56529 5.68164 5.84487 6.23317 6.32919 6.94179 7.12227 7.14850 7.81292 8.45493 9.25964 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.002305 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.949639 B =12145.033522 C =12232.820569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 N -0.374 5.374 4 O 0.092 5.908 5 C 0.033 3.967 6 C -0.082 4.082 7 C -0.269 4.269 8 C 0.601 3.399 9 O -0.571 6.571 10 N -0.591 5.591 11 C 0.107 3.893 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.073 4.073 15 H 0.059 0.941 16 C -0.076 4.076 17 H 0.086 0.914 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.630 5.630 21 C -0.237 4.237 22 H 0.081 0.919 23 C -0.071 4.071 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.268 1.268 29 C 0.142 3.858 30 C 0.121 3.879 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.066 0.934 46 H -0.014 1.014 47 H 0.246 0.754 48 H 0.025 0.975 49 H 0.023 0.977 50 H 0.088 0.912 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 26.729 3.562 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 N -0.083 5.083 4 O 0.033 5.967 5 C -0.031 4.031 6 C -0.139 4.139 7 C -0.277 4.277 8 C 0.388 3.612 9 O -0.451 6.451 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.093 4.093 15 H 0.077 0.923 16 C -0.095 4.095 17 H 0.104 0.896 18 C -0.164 4.164 19 C 0.028 3.972 20 N -0.356 5.356 21 C -0.366 4.366 22 H 0.099 0.901 23 C -0.263 4.263 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.193 1.193 29 C 0.018 3.982 30 C -0.001 4.001 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.004 0.996 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.106 0.894 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.113 27.547 2.998 27.884 hybrid contribution 0.361 -2.135 -0.141 2.170 sum -2.753 25.412 2.857 25.720 Atomic orbital electron populations 1.20347 0.83558 1.04521 1.05138 1.25144 0.99657 0.85996 1.00089 1.73611 0.89497 1.23796 1.21398 1.84521 1.21259 1.22866 1.68080 1.25094 0.98022 0.83317 0.96666 1.20672 0.88191 0.99275 1.05750 1.21775 0.93901 0.94553 1.17443 1.17106 0.76222 0.84408 0.83417 1.90821 1.52708 1.68908 1.32634 1.48105 1.67258 1.10728 1.06064 1.21971 1.01113 0.95830 0.82514 1.21901 0.98473 0.94961 1.01143 1.21600 1.02833 0.95567 0.95159 1.21325 0.98455 0.92430 0.97102 0.92289 1.22035 0.98927 0.93278 0.95253 0.89612 1.22876 1.00862 0.95938 0.96740 1.21682 0.91119 0.93485 0.90899 1.44866 1.46853 1.12083 1.31764 1.19475 1.15312 0.92532 1.09272 0.90068 1.25665 1.01822 1.00387 0.98474 1.70080 1.43685 1.24421 1.21956 0.85049 0.78545 0.78851 0.76728 1.21343 1.22113 1.19252 1.21445 0.96515 0.85308 0.94973 1.21664 0.98535 0.78596 1.01299 0.87582 0.88978 0.90265 0.87935 0.86238 0.88963 0.89649 0.89054 0.91790 0.88067 0.91589 0.90317 0.90400 0.92856 0.91614 0.99625 0.94456 0.95724 0.95883 0.89374 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.49 71.24 0.75 -0.32 16 2 C 0.05 1.04 7.59 45.16 0.34 1.38 16 3 N -0.37 -7.86 12.01 -44.79 -0.54 -8.40 16 4 O 0.09 1.75 11.06 76.95 0.85 2.60 16 5 C 0.03 0.56 7.43 25.48 0.19 0.75 16 6 C -0.08 -0.90 10.33 71.23 0.74 -0.17 16 7 C -0.27 -5.59 4.23 -18.75 -0.08 -5.67 16 8 C 0.60 14.85 7.49 86.65 0.65 15.50 16 9 O -0.57 -19.24 16.52 -4.05 -0.07 -19.31 16 10 N -0.59 -11.78 2.97 -822.87 -2.45 -14.23 16 11 C 0.11 1.41 6.34 86.36 0.55 1.95 16 12 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 13 C -0.11 -2.02 4.98 30.62 0.15 -1.87 16 14 C -0.07 -1.75 1.71 -10.73 -0.02 -1.77 16 15 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 16 C -0.08 -2.36 2.49 -9.61 -0.02 -2.38 16 17 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 18 C -0.13 -4.74 5.73 31.99 0.18 -4.55 16 19 C 0.15 7.75 5.89 86.85 0.51 8.26 16 20 N -0.63 -32.81 3.39 -692.01 -2.35 -35.16 16 21 C -0.24 -13.43 10.27 84.03 0.86 -12.57 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 24 N -0.95 -58.03 10.09 21.65 0.22 -57.81 16 25 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 C 0.14 5.64 5.84 86.73 0.51 6.15 16 30 C 0.12 2.73 5.45 86.35 0.47 3.20 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 37 H 0.09 1.05 6.25 -2.39 -0.01 1.04 16 38 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 1.31 7.12 -2.39 -0.02 1.30 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 45 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 46 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.07 2.07 6.51 -2.39 -0.02 2.06 16 Total: -1.00 -75.74 402.46 5.04 -70.70 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.92 Total: 10.62 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.43 Total: 2.83 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -5.11 Total: -115.59 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.78 Total: -16.71 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.74 5.04 -70.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961105536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.146 kcal (2) G-P(sol) polarization free energy of solvation -75.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds