Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30014 * 127.34076 * 2 1 4 4 O 1.20659 * 112.30302 * 179.73697 * 3 2 1 5 5 C 1.33490 * 113.15769 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.82854 * 180.02562 * 5 4 3 7 7 C 1.37359 * 106.34333 * 359.97438 * 5 4 3 8 8 C 1.47396 * 128.56745 * 180.02562 * 7 5 4 9 9 O 1.21611 * 120.00049 * 270.00349 * 8 7 5 10 10 N 1.34771 * 120.00125 * 89.99607 * 8 7 5 11 11 C 1.46930 * 120.63158 * 359.72556 * 10 8 7 12 12 C 1.53626 * 108.54192 * 126.36731 * 11 10 8 13 13 C 1.53036 * 109.24270 * 54.85992 * 12 11 10 14 14 C 1.53038 * 109.53557 * 298.50666 * 13 12 11 15 15 H 1.09007 * 109.50026 * 301.41316 * 14 13 12 16 16 C 1.53005 * 109.49817 * 181.31928 * 14 13 12 17 17 H 1.08995 * 110.64219 * 301.85097 * 16 14 13 18 18 C 1.55159 * 110.71902 * 65.19026 * 16 14 13 19 19 C 1.54905 * 101.58215 * 153.86765 * 18 16 14 20 20 N 1.47419 * 104.83330 * 322.98546 * 19 18 16 21 21 C 1.36939 * 125.65422 * 204.09775 * 20 19 18 22 22 H 1.07995 * 120.00396 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99639 * 0.03655 * 21 20 19 24 24 N 1.31622 * 120.00226 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00140 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46809 * 90.00510 * 25 23 21 27 27 H 1.48496 * 109.47318 * 210.00252 * 25 23 21 28 28 H 1.48497 * 109.46905 * 330.00690 * 25 23 21 29 29 C 1.47026 * 108.70435 * 24.12877 * 20 19 18 30 30 C 1.46933 * 120.63275 * 180.02562 * 10 8 7 31 31 H 1.08995 * 109.47429 * 90.02646 * 1 2 3 32 32 H 1.09002 * 109.47586 * 210.03257 * 1 2 3 33 33 H 1.09009 * 109.46932 * 330.02737 * 1 2 3 34 34 H 1.09005 * 109.46924 * 359.97086 * 6 5 4 35 35 H 1.08999 * 109.46977 * 119.97070 * 6 5 4 36 36 H 1.09001 * 109.46678 * 239.97185 * 6 5 4 37 37 H 1.08998 * 109.58554 * 246.20017 * 11 10 8 38 38 H 1.09000 * 109.58528 * 6.62140 * 11 10 8 39 39 H 1.08993 * 109.63611 * 294.86288 * 12 11 10 40 40 H 1.09004 * 109.42635 * 174.72391 * 12 11 10 41 41 H 1.09002 * 109.45617 * 178.49145 * 13 12 11 42 42 H 1.08997 * 109.45463 * 58.52192 * 13 12 11 43 43 H 1.09008 * 110.99963 * 271.93665 * 18 16 14 44 44 H 1.08997 * 111.00427 * 35.78656 * 18 16 14 45 45 H 1.09003 * 110.36842 * 204.14949 * 19 18 16 46 46 H 1.09001 * 110.46174 * 81.87515 * 19 18 16 47 47 H 0.96992 * 120.00702 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88876 * 239.52663 * 29 20 19 49 49 H 1.08999 * 110.01163 * 118.42631 * 29 20 19 50 50 H 1.08997 * 109.58078 * 353.37353 * 30 10 8 51 51 H 1.08995 * 109.58697 * 113.65336 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0051 5 6 3.6493 -0.6009 0.0089 6 6 4.9711 -1.3248 0.0162 7 6 2.3991 -1.1697 0.0062 8 6 2.0399 -2.5992 0.0089 9 8 1.8955 -3.1920 -1.0431 10 7 1.8716 -3.2495 1.1773 11 6 2.0487 -2.5486 2.4565 12 6 0.7844 -2.7533 3.3048 13 6 0.5069 -4.2519 3.4430 14 6 0.2608 -4.8566 2.0588 15 1 -0.5826 -4.3528 1.5864 16 6 -0.0490 -6.3482 2.2008 17 1 0.7706 -6.8650 2.7000 18 6 -1.3833 -6.5616 2.9634 19 6 -1.8357 -7.9394 2.4189 20 7 -1.4403 -7.9324 0.9988 21 6 -2.0088 -8.6880 0.0082 22 1 -1.6455 -8.6106 -1.0059 23 6 -3.0522 -9.5532 0.3075 24 7 -3.4955 -9.6470 1.5433 25 14 -3.8282 -10.5834 -1.0438 26 1 -3.1126 -11.8803 -1.1501 27 1 -5.2560 -10.8310 -0.7194 28 1 -3.7327 -9.8579 -2.3359 29 6 -0.3340 -6.9803 0.8221 30 6 1.5141 -4.6746 1.1963 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 -0.8897 0.5143 33 1 -0.3633 0.8903 0.5135 34 1 5.7834 -0.5979 0.0174 35 1 5.0394 -1.9475 0.9081 36 1 5.0464 -1.9524 -0.8719 37 1 2.9133 -2.9565 2.9800 38 1 2.1988 -1.4848 2.2725 39 1 -0.0638 -2.2693 2.8208 40 1 0.9365 -2.3189 4.2929 41 1 -0.3744 -4.4020 4.0667 42 1 1.3657 -4.7391 3.9046 43 1 -1.2158 -6.6027 4.0397 44 1 -2.1058 -5.7854 2.7113 45 1 -2.9164 -8.0476 2.5113 46 1 -1.3279 -8.7445 2.9502 47 1 -4.2243 -10.2518 1.7526 48 1 -0.6215 -6.2056 0.1114 49 1 0.5532 -7.5019 0.4630 50 1 1.3113 -5.0138 0.1805 51 1 2.3371 -5.2522 1.6170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961105537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = 40.949359 kcal Electronic energy + Delta-G solvation = -31706.876503 eV Core-core repulsion = 27609.805420 eV Total energy + Delta-G solvation = -4097.071083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.17211 -40.36901 -38.33647 -36.69434 -34.90810 -34.03341 -33.49220 -32.29767 -31.14790 -29.21580 -29.02496 -28.40986 -27.09758 -26.07139 -24.62961 -23.89833 -22.78007 -21.25172 -20.41816 -20.01255 -19.42409 -19.33552 -18.19039 -17.72018 -16.88894 -16.67863 -16.07020 -15.50325 -14.95653 -14.61318 -14.55442 -14.44955 -14.04737 -13.85741 -13.82590 -13.64598 -13.51147 -13.43175 -13.20339 -13.03313 -12.95567 -12.71626 -12.56052 -12.25232 -11.83684 -11.57631 -11.40643 -11.26681 -11.09879 -11.03247 -10.86064 -10.76373 -10.67931 -10.43066 -10.13203 -10.07875 -9.99378 -9.78990 -9.72968 -9.61098 -9.43988 -8.78117 -8.60523 -6.77700 -5.61037 -3.02076 0.99017 1.61634 2.19518 2.50142 2.89102 3.42900 3.47939 3.50045 3.76448 3.92715 4.29613 4.49933 4.55979 4.56810 4.73585 4.77233 4.87561 4.91828 4.94438 5.05832 5.08974 5.18860 5.20898 5.24664 5.34356 5.39078 5.48733 5.49655 5.52510 5.59058 5.64585 5.67440 5.73925 5.77571 5.87562 5.93367 6.01608 6.05501 6.24749 6.27390 6.42073 6.45437 6.63790 6.66274 6.81291 7.02160 7.14391 7.56264 7.68464 7.90028 7.91034 7.92183 8.41319 9.27365 9.88428 10.53627 11.42919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002491 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.845909 B =11239.384635 C =11783.840151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.014 3.986 6 C -0.079 4.079 7 C -0.244 4.244 8 C 0.597 3.403 9 O -0.521 6.521 10 N -0.599 5.599 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.114 4.114 14 C -0.086 4.086 15 H 0.075 0.925 16 C -0.092 4.092 17 H 0.071 0.929 18 C -0.135 4.135 19 C 0.151 3.849 20 N -0.605 5.605 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.140 3.860 30 C 0.115 3.885 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.018 0.982 50 H 0.099 0.901 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.411 20.164 5.273 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.050 4.050 6 C -0.136 4.136 7 C -0.251 4.251 8 C 0.383 3.617 9 O -0.396 6.396 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.331 5.331 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.014 3.986 30 C -0.006 4.006 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.036 0.964 50 H 0.117 0.883 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.983 20.995 4.655 26.210 hybrid contribution -0.448 -1.321 -0.626 1.529 sum 14.535 19.674 4.030 24.790 Atomic orbital electron populations 1.20248 0.85046 1.04168 1.04194 1.24767 0.98629 0.86382 1.00775 1.73617 0.89115 1.23288 1.20298 1.84536 1.21526 1.22530 1.67999 1.24599 0.97356 0.83765 0.99266 1.20476 0.88954 0.99370 1.04846 1.21890 0.92917 0.95389 1.14938 1.16931 0.77110 0.83886 0.83778 1.90860 1.50200 1.67563 1.30992 1.48080 1.68251 1.11495 1.05306 1.21835 0.98495 0.97088 0.84026 1.21997 0.97528 0.97882 0.99770 1.21584 1.02296 0.94013 0.97264 1.21519 0.97214 0.96657 0.95174 0.90642 1.22147 0.98398 0.92664 0.97969 0.91091 1.23019 0.95426 1.01100 0.97849 1.21914 1.02683 0.89683 0.83082 1.44510 1.36756 1.46517 1.05276 1.19102 1.11619 1.15258 0.88785 0.90549 1.24774 0.99236 1.00138 0.96673 1.69802 1.30023 1.40735 1.16754 0.86085 0.78473 0.80228 0.80837 1.21680 1.21694 1.20684 1.21340 0.91303 0.92189 0.93788 1.21873 0.96985 0.78806 1.02985 0.89436 0.89737 0.89842 0.89140 0.88745 0.88493 0.91022 0.90441 0.91442 0.90745 0.90962 0.91778 0.92586 0.92303 0.87780 0.97224 0.93837 0.95897 0.96363 0.88294 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.00 0.38 -0.34 16 2 C 0.06 0.63 7.56 -79.77 -0.60 0.03 16 3 N -0.36 -4.11 12.01 34.78 0.42 -3.69 16 4 O 0.10 0.98 11.06 18.66 0.21 1.19 16 5 C 0.01 0.12 7.55 -34.63 -0.26 -0.14 16 6 C -0.08 -0.43 10.33 36.01 0.37 -0.06 16 7 C -0.24 -2.75 4.19 -102.89 -0.43 -3.18 16 8 C 0.60 7.87 7.52 -12.54 -0.09 7.77 16 9 O -0.52 -9.01 16.52 5.27 0.09 -8.92 16 10 N -0.60 -6.71 2.97 -173.75 -0.52 -7.23 16 11 C 0.11 0.89 6.37 -3.48 -0.02 0.87 16 12 C -0.13 -1.10 6.10 -26.39 -0.16 -1.26 16 13 C -0.11 -1.15 5.02 -26.69 -0.13 -1.28 16 14 C -0.09 -1.12 1.71 -90.48 -0.15 -1.28 16 15 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 16 C -0.09 -1.51 2.49 -88.78 -0.22 -1.73 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 18 C -0.14 -2.46 5.61 -24.58 -0.14 -2.60 16 19 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 20 N -0.60 -15.74 3.39 -170.08 -0.58 -16.32 16 21 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 24 N -0.92 -27.26 10.09 55.49 0.56 -26.70 16 25 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 C 0.14 2.93 5.96 -3.06 -0.02 2.92 16 30 C 0.11 1.45 5.40 -3.69 -0.02 1.43 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.61 6.31 -51.93 -0.33 0.29 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.89 8.10 -51.92 -0.42 0.47 16 44 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 45 H 0.10 2.86 5.87 -51.93 -0.30 2.55 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.50 7.55 -51.93 -0.39 0.10 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 1.52 6.21 -51.93 -0.32 1.20 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -33.95 402.56 -9.01 -42.96 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.45 Total: -2.74 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.77 Total: -2.07 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.12 Total: -53.94 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.29 Total: -7.74 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.95 -9.01 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961105537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.906 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds