Wall clock time and date at job start Wed Apr 1 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30014 * 127.34076 * 2 1 4 4 O 1.20659 * 112.30302 * 179.73697 * 3 2 1 5 5 C 1.33490 * 113.15769 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.82854 * 180.02562 * 5 4 3 7 7 C 1.37359 * 106.34333 * 359.97438 * 5 4 3 8 8 C 1.47396 * 128.56745 * 180.02562 * 7 5 4 9 9 O 1.21611 * 120.00049 * 270.00349 * 8 7 5 10 10 N 1.34771 * 120.00125 * 89.99607 * 8 7 5 11 11 C 1.46930 * 120.63158 * 359.72556 * 10 8 7 12 12 C 1.53626 * 108.54192 * 126.36731 * 11 10 8 13 13 C 1.53036 * 109.24270 * 54.85992 * 12 11 10 14 14 C 1.53038 * 109.53557 * 298.50666 * 13 12 11 15 15 H 1.09007 * 109.50026 * 301.41316 * 14 13 12 16 16 C 1.53005 * 109.49817 * 181.31928 * 14 13 12 17 17 H 1.08995 * 110.64219 * 301.85097 * 16 14 13 18 18 C 1.55159 * 110.71902 * 65.19026 * 16 14 13 19 19 C 1.54905 * 101.58215 * 153.86765 * 18 16 14 20 20 N 1.47419 * 104.83330 * 322.98546 * 19 18 16 21 21 C 1.36939 * 125.65422 * 204.09775 * 20 19 18 22 22 H 1.07995 * 120.00396 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99639 * 0.03655 * 21 20 19 24 24 N 1.31622 * 120.00226 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00140 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46809 * 90.00510 * 25 23 21 27 27 H 1.48496 * 109.47318 * 210.00252 * 25 23 21 28 28 H 1.48497 * 109.46905 * 330.00690 * 25 23 21 29 29 C 1.47026 * 108.70435 * 24.12877 * 20 19 18 30 30 C 1.46933 * 120.63275 * 180.02562 * 10 8 7 31 31 H 1.08995 * 109.47429 * 90.02646 * 1 2 3 32 32 H 1.09002 * 109.47586 * 210.03257 * 1 2 3 33 33 H 1.09009 * 109.46932 * 330.02737 * 1 2 3 34 34 H 1.09005 * 109.46924 * 359.97086 * 6 5 4 35 35 H 1.08999 * 109.46977 * 119.97070 * 6 5 4 36 36 H 1.09001 * 109.46678 * 239.97185 * 6 5 4 37 37 H 1.08998 * 109.58554 * 246.20017 * 11 10 8 38 38 H 1.09000 * 109.58528 * 6.62140 * 11 10 8 39 39 H 1.08993 * 109.63611 * 294.86288 * 12 11 10 40 40 H 1.09004 * 109.42635 * 174.72391 * 12 11 10 41 41 H 1.09002 * 109.45617 * 178.49145 * 13 12 11 42 42 H 1.08997 * 109.45463 * 58.52192 * 13 12 11 43 43 H 1.09008 * 110.99963 * 271.93665 * 18 16 14 44 44 H 1.08997 * 111.00427 * 35.78656 * 18 16 14 45 45 H 1.09003 * 110.36842 * 204.14949 * 19 18 16 46 46 H 1.09001 * 110.46174 * 81.87515 * 19 18 16 47 47 H 0.96992 * 120.00702 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.88876 * 239.52663 * 29 20 19 49 49 H 1.08999 * 110.01163 * 118.42631 * 29 20 19 50 50 H 1.08997 * 109.58078 * 353.37353 * 30 10 8 51 51 H 1.08995 * 109.58697 * 113.65336 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0051 5 6 3.6493 -0.6009 0.0089 6 6 4.9711 -1.3248 0.0162 7 6 2.3991 -1.1697 0.0062 8 6 2.0399 -2.5992 0.0089 9 8 1.8955 -3.1920 -1.0431 10 7 1.8716 -3.2495 1.1773 11 6 2.0487 -2.5486 2.4565 12 6 0.7844 -2.7533 3.3048 13 6 0.5069 -4.2519 3.4430 14 6 0.2608 -4.8566 2.0588 15 1 -0.5826 -4.3528 1.5864 16 6 -0.0490 -6.3482 2.2008 17 1 0.7706 -6.8650 2.7000 18 6 -1.3833 -6.5616 2.9634 19 6 -1.8357 -7.9394 2.4189 20 7 -1.4403 -7.9324 0.9988 21 6 -2.0088 -8.6880 0.0082 22 1 -1.6455 -8.6106 -1.0059 23 6 -3.0522 -9.5532 0.3075 24 7 -3.4955 -9.6470 1.5433 25 14 -3.8282 -10.5834 -1.0438 26 1 -3.1126 -11.8803 -1.1501 27 1 -5.2560 -10.8310 -0.7194 28 1 -3.7327 -9.8579 -2.3359 29 6 -0.3340 -6.9803 0.8221 30 6 1.5141 -4.6746 1.1963 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 -0.8897 0.5143 33 1 -0.3633 0.8903 0.5135 34 1 5.7834 -0.5979 0.0174 35 1 5.0394 -1.9475 0.9081 36 1 5.0464 -1.9524 -0.8719 37 1 2.9133 -2.9565 2.9800 38 1 2.1988 -1.4848 2.2725 39 1 -0.0638 -2.2693 2.8208 40 1 0.9365 -2.3189 4.2929 41 1 -0.3744 -4.4020 4.0667 42 1 1.3657 -4.7391 3.9046 43 1 -1.2158 -6.6027 4.0397 44 1 -2.1058 -5.7854 2.7113 45 1 -2.9164 -8.0476 2.5113 46 1 -1.3279 -8.7445 2.9502 47 1 -4.2243 -10.2518 1.7526 48 1 -0.6215 -6.2056 0.1114 49 1 0.5532 -7.5019 0.4630 50 1 1.3113 -5.0138 0.1805 51 1 2.3371 -5.2522 1.6170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961105537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:27 Heat of formation + Delta-G solvation = 21.047459 kcal Electronic energy + Delta-G solvation = -31707.739514 eV Core-core repulsion = 27609.805420 eV Total energy + Delta-G solvation = -4097.934094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.97344 -41.36344 -39.68524 -38.01561 -35.77393 -35.17868 -34.57309 -33.54918 -32.47178 -30.89741 -29.84124 -29.15592 -28.57114 -27.07822 -26.33820 -24.82454 -23.90752 -22.27629 -21.77160 -21.26832 -20.73164 -20.27147 -19.04722 -18.86606 -18.53161 -17.64910 -17.00713 -16.91209 -16.46928 -16.05513 -15.65087 -15.43558 -15.29728 -14.92878 -14.65099 -14.45926 -14.33291 -14.24777 -14.15632 -14.05608 -13.87933 -13.71700 -13.56998 -13.43813 -13.40289 -13.24189 -12.93269 -12.75381 -12.30005 -12.16829 -12.14307 -12.06957 -11.93694 -11.81423 -11.69799 -11.52867 -11.29377 -11.19488 -11.07251 -10.91834 -10.74512 -10.39312 -9.72984 -8.88157 -7.78562 -5.22587 0.24977 0.79075 1.22126 1.43886 1.45782 1.54799 1.69526 2.09344 2.48205 2.98925 3.21120 3.29922 3.48880 3.63579 3.71186 3.80988 3.87877 3.93136 4.06809 4.16488 4.21019 4.27645 4.31318 4.42762 4.45426 4.48701 4.55783 4.57538 4.60213 4.60984 4.71465 4.74858 4.77058 4.83867 4.89357 4.91178 4.98145 5.03066 5.07059 5.11927 5.15119 5.21162 5.37245 5.40061 5.44736 5.48584 5.56236 5.70171 5.83816 6.23231 6.32194 6.94190 7.11410 7.15101 7.79258 8.42629 9.22933 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.002491 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.845909 B =11239.384635 C =11783.840151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.050 3.950 3 N -0.373 5.373 4 O 0.096 5.904 5 C 0.035 3.965 6 C -0.081 4.081 7 C -0.270 4.270 8 C 0.600 3.400 9 O -0.574 6.574 10 N -0.591 5.591 11 C 0.106 3.894 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.074 4.074 15 H 0.053 0.947 16 C -0.074 4.074 17 H 0.089 0.911 18 C -0.117 4.117 19 C 0.150 3.850 20 N -0.629 5.629 21 C -0.241 4.241 22 H 0.073 0.927 23 C -0.066 4.066 24 N -0.947 5.947 25 Si 0.979 3.021 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.273 1.273 29 C 0.136 3.864 30 C 0.118 3.882 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.068 0.932 46 H -0.012 1.012 47 H 0.247 0.753 48 H 0.011 0.989 49 H 0.016 0.984 50 H 0.064 0.936 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 21.694 6.996 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 N -0.081 5.081 4 O 0.035 5.965 5 C -0.029 4.029 6 C -0.138 4.138 7 C -0.278 4.278 8 C 0.387 3.613 9 O -0.454 6.454 10 N -0.321 5.321 11 C -0.015 4.015 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.094 4.094 15 H 0.072 0.928 16 C -0.094 4.094 17 H 0.108 0.892 18 C -0.155 4.155 19 C 0.026 3.974 20 N -0.355 5.355 21 C -0.371 4.371 22 H 0.091 0.909 23 C -0.259 4.259 24 N -0.597 5.597 25 Si 0.807 3.193 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.198 1.198 29 C 0.011 3.989 30 C -0.004 4.004 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.006 0.994 47 H 0.057 0.943 48 H 0.029 0.971 49 H 0.034 0.966 50 H 0.082 0.918 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.994 22.562 6.418 28.966 hybrid contribution -1.025 -1.806 -1.179 2.389 sum 15.968 20.756 5.239 26.706 Atomic orbital electron populations 1.20305 0.84209 1.04862 1.04293 1.25045 0.99377 0.86303 1.00434 1.73609 0.89569 1.23650 1.21289 1.84520 1.21078 1.23023 1.67840 1.25192 0.98061 0.83192 0.96474 1.20724 0.87732 0.99875 1.05468 1.21743 0.94063 0.94352 1.17600 1.17152 0.76277 0.84442 0.83435 1.90831 1.52793 1.68842 1.32947 1.48121 1.66949 1.10930 1.06136 1.22107 0.99620 0.97383 0.82432 1.21979 0.97033 0.96466 1.01157 1.21565 1.03217 0.95217 0.94648 1.21357 0.96588 0.93996 0.97459 0.92839 1.22055 0.97957 0.94870 0.94497 0.89242 1.22837 0.96007 0.96939 0.99744 1.21751 1.00361 0.92653 0.82670 1.44855 1.38100 1.46952 1.05564 1.19428 1.12153 1.15965 0.89517 0.90891 1.25608 0.99811 1.01468 0.98975 1.70056 1.30205 1.41125 1.18351 0.85077 0.77275 0.78555 0.78434 1.21179 1.21578 1.19825 1.21510 0.89634 0.91086 0.96714 1.21712 0.97538 0.80058 1.01069 0.89631 0.89930 0.88206 0.86519 0.86902 0.88791 0.88293 0.89800 0.92490 0.87839 0.90864 0.89833 0.89176 0.92489 0.91369 0.99433 0.94278 0.97085 0.96615 0.91770 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.49 71.23 0.75 -0.66 16 2 C 0.05 1.08 7.56 45.16 0.34 1.42 16 3 N -0.37 -8.18 12.01 -44.78 -0.54 -8.72 16 4 O 0.10 1.80 11.06 77.01 0.85 2.65 16 5 C 0.03 0.57 7.55 25.48 0.19 0.76 16 6 C -0.08 -0.66 10.33 71.24 0.74 0.07 16 7 C -0.27 -5.82 4.19 -18.74 -0.08 -5.90 16 8 C 0.60 15.62 7.52 86.66 0.65 16.28 16 9 O -0.57 -20.62 16.52 -4.07 -0.07 -20.69 16 10 N -0.59 -12.31 2.97 -821.89 -2.44 -14.75 16 11 C 0.11 1.37 6.37 86.51 0.55 1.92 16 12 C -0.13 -1.63 6.10 30.82 0.19 -1.44 16 13 C -0.11 -1.79 5.02 30.62 0.15 -1.64 16 14 C -0.07 -1.82 1.71 -10.70 -0.02 -1.84 16 15 H 0.05 1.56 8.13 -2.38 -0.02 1.54 16 16 C -0.07 -2.35 2.49 -9.60 -0.02 -2.37 16 17 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 18 C -0.12 -4.13 5.61 31.99 0.18 -3.95 16 19 C 0.15 7.50 5.89 86.85 0.51 8.01 16 20 N -0.63 -33.80 3.39 -692.00 -2.35 -36.15 16 21 C -0.24 -14.24 10.27 84.03 0.86 -13.38 16 22 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 24 N -0.95 -57.67 10.09 21.65 0.22 -57.45 16 25 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 29 C 0.14 5.83 5.96 86.73 0.52 6.35 16 30 C 0.12 2.86 5.40 86.37 0.47 3.33 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 1.05 6.31 -2.39 -0.02 1.04 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.07 1.25 7.38 -2.39 -0.02 1.23 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 2.60 8.10 -2.38 -0.02 2.59 16 44 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 45 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.01 0.50 7.55 -2.39 -0.02 0.48 16 49 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 2.04 6.21 -2.39 -0.01 2.02 16 51 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -78.47 402.56 5.07 -73.40 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.92 Total: 8.93 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.44 Total: 3.55 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -5.11 Total: -117.07 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.78 Total: -18.04 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -78.47 5.07 -73.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961105537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.450 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds