Wall clock time and date at job start Wed Apr 1 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29931 * 125.37485 * 2 1 4 4 C 1.36068 * 108.47385 * 179.73722 * 3 2 1 5 5 C 1.47421 * 126.44910 * 180.02562 * 4 3 2 6 6 O 1.21610 * 120.00371 * 186.33672 * 5 4 3 7 7 N 1.34782 * 119.99721 * 6.34305 * 5 4 3 8 8 C 1.46926 * 120.63216 * 6.84578 * 7 5 4 9 9 C 1.53624 * 108.53916 * 126.37295 * 8 7 5 10 10 C 1.53034 * 109.24567 * 54.85934 * 9 8 7 11 11 C 1.53039 * 109.53774 * 298.51306 * 10 9 8 12 12 H 1.09009 * 109.49353 * 301.41112 * 11 10 9 13 13 C 1.53004 * 109.52740 * 181.33252 * 11 10 9 14 14 H 1.08997 * 110.88213 * 300.84439 * 13 11 10 15 15 C 1.55151 * 111.00404 * 176.96117 * 13 11 10 16 16 C 1.54367 * 102.91874 * 206.44784 * 15 13 11 17 17 N 1.47020 * 107.29146 * 22.14610 * 16 15 13 18 18 C 1.36933 * 125.65481 * 181.05918 * 17 16 15 19 19 H 1.07998 * 120.00255 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99892 * 0.03051 * 18 17 16 21 21 N 1.31622 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00351 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47167 * 60.00006 * 22 20 18 24 24 H 1.48498 * 109.47474 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46979 * 300.00645 * 22 20 18 26 26 C 1.47429 * 108.70022 * 1.08373 * 17 16 15 27 27 C 1.46923 * 120.62890 * 187.13374 * 7 5 4 28 28 C 1.36095 * 107.10481 * 0.02562 * 4 3 2 29 29 C 1.50698 * 126.52338 * 179.97438 * 28 4 3 30 30 O 1.34047 * 125.37820 * 179.69442 * 2 1 3 31 31 H 1.08996 * 109.47341 * 90.00447 * 1 2 3 32 32 H 1.09008 * 109.47159 * 209.99778 * 1 2 3 33 33 H 1.08993 * 109.47373 * 329.99397 * 1 2 3 34 34 H 1.08991 * 109.58714 * 246.20522 * 8 7 5 35 35 H 1.09007 * 109.58393 * 6.63552 * 8 7 5 36 36 H 1.09003 * 109.63483 * 294.86124 * 9 8 7 37 37 H 1.09005 * 109.42845 * 174.72868 * 9 8 7 38 38 H 1.08991 * 109.46486 * 178.48793 * 10 9 8 39 39 H 1.09006 * 109.44932 * 58.52157 * 10 9 8 40 40 H 1.08991 * 110.72422 * 324.78577 * 15 13 11 41 41 H 1.09009 * 110.72125 * 88.06372 * 15 13 11 42 42 H 1.08994 * 109.85170 * 262.73282 * 16 15 13 43 43 H 1.09010 * 110.03029 * 141.65149 * 16 15 13 44 44 H 0.96998 * 119.99979 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.37312 * 217.03920 * 26 17 16 46 46 H 1.09005 * 110.36542 * 94.71284 * 26 17 16 47 47 H 1.08998 * 109.58835 * 353.36877 * 27 7 5 48 48 H 1.09001 * 109.58919 * 113.79324 * 27 7 5 49 49 H 1.09000 * 109.47081 * 90.00510 * 29 28 4 50 50 H 1.08998 * 109.46745 * 210.00164 * 29 28 4 51 51 H 1.08999 * 109.47487 * 329.99561 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6639 0.0059 5 6 4.7439 1.5439 0.0085 6 8 5.8570 1.0669 -0.1023 7 7 4.5915 2.8772 0.1339 8 6 3.2715 3.4563 0.4183 9 6 3.3896 4.3562 1.6578 10 6 4.4930 5.3911 1.4265 11 6 5.8305 4.6761 1.2215 12 1 6.0548 4.0662 2.0967 13 6 6.9390 5.7120 1.0233 14 1 6.7302 6.3442 0.1604 15 6 8.3238 5.0256 0.8880 16 6 9.2992 6.1162 1.3799 17 7 8.5300 7.0415 2.2248 18 6 9.0254 8.1605 2.8392 19 1 8.3759 8.7777 3.4422 20 6 10.3623 8.5016 2.6869 21 7 11.1536 7.7497 1.9515 22 14 11.0383 10.0277 3.5257 23 1 10.8651 9.9026 4.9953 24 1 12.4818 10.1693 3.2071 25 1 10.3051 11.2247 3.0410 26 6 7.1371 6.5647 2.3014 27 6 5.7411 3.7795 -0.0173 28 6 3.5660 -0.6971 0.0090 29 6 4.7802 -1.5896 0.0151 30 8 2.2831 -1.0929 0.0058 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.9402 4.0474 -0.4355 35 1 2.5559 2.6572 0.6120 36 1 3.6368 3.7492 2.5288 37 1 2.4415 4.8668 1.8269 38 1 4.5617 6.0485 2.2931 39 1 4.2572 5.9812 0.5408 40 1 8.3804 4.1425 1.5243 41 1 8.5261 4.7669 -0.1515 42 1 9.7158 6.6521 0.5272 43 1 10.1025 5.6639 1.9617 44 1 12.0877 7.9883 1.8448 45 1 6.4469 7.4083 2.3052 46 1 6.9941 5.9524 3.1918 47 1 6.6555 3.1937 -0.1112 48 1 5.6071 4.3963 -0.9060 49 1 5.0693 -1.8026 1.0443 50 1 4.5475 -2.5230 -0.4975 51 1 5.6018 -1.0890 -0.4971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961254594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:21 Heat of formation + Delta-G solvation = 11.952831 kcal Electronic energy + Delta-G solvation = -31252.686239 eV Core-core repulsion = 27154.357772 eV Total energy + Delta-G solvation = -4098.328466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.82871 -40.16334 -38.23298 -36.63308 -35.36859 -33.50263 -33.39185 -32.22679 -31.01384 -30.47995 -28.85686 -27.60098 -26.59537 -25.19429 -24.48608 -23.21412 -22.80529 -21.84595 -20.75460 -19.78317 -19.41499 -19.32064 -17.57674 -17.41531 -16.72343 -16.30144 -15.93863 -15.42756 -14.76356 -14.56249 -14.51456 -14.38650 -14.18904 -13.91492 -13.83592 -13.66845 -13.43491 -13.14825 -13.12176 -13.02369 -12.94488 -12.63876 -12.22867 -12.11184 -11.97290 -11.70831 -11.59993 -11.30445 -11.07472 -10.93710 -10.79766 -10.71820 -10.53451 -10.36255 -10.06721 -10.01535 -9.82099 -9.69093 -9.58863 -9.46792 -9.12912 -8.55207 -8.51723 -6.73511 -5.63001 -2.96084 0.78545 1.64466 2.09907 2.85769 3.10899 3.44928 3.48671 3.49682 3.50405 4.25525 4.33569 4.56187 4.68124 4.80307 4.85756 4.94298 4.98667 5.00287 5.03658 5.09996 5.15534 5.20151 5.33283 5.43650 5.51849 5.55313 5.56787 5.65178 5.67817 5.73164 5.81280 5.83932 5.89749 6.02256 6.07557 6.11041 6.16591 6.22437 6.37703 6.43716 6.54333 6.59885 6.68982 6.70522 6.85866 7.08156 7.09879 7.38143 7.64647 7.75083 7.92213 8.03744 8.35448 9.30732 9.91496 10.58860 11.48585 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.002160 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220512 B =12961.445595 C =13784.892681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.455 5.455 4 C -0.070 4.070 5 C 0.599 3.401 6 O -0.536 6.536 7 N -0.591 5.591 8 C 0.079 3.921 9 C -0.133 4.133 10 C -0.117 4.117 11 C -0.085 4.085 12 H 0.073 0.927 13 C -0.095 4.095 14 H 0.073 0.927 15 C -0.140 4.140 16 C 0.178 3.822 17 N -0.607 5.607 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.145 3.855 27 C 0.117 3.883 28 C 0.041 3.959 29 C -0.079 4.079 30 O -0.197 6.197 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.035 0.965 46 H 0.016 0.984 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.827 -18.721 -5.738 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.186 5.186 4 C -0.190 4.190 5 C 0.387 3.613 6 O -0.414 6.414 7 N -0.322 5.322 8 C -0.043 4.043 9 C -0.171 4.171 10 C -0.154 4.154 11 C -0.105 4.105 12 H 0.091 0.909 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.179 4.179 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.019 3.981 27 C -0.005 4.005 28 C -0.015 4.015 29 C -0.135 4.135 30 O -0.085 6.085 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.246 -18.247 -5.789 30.114 hybrid contribution 0.567 0.344 0.456 0.805 sum -22.679 -17.903 -5.333 29.382 Atomic orbital electron populations 1.20326 0.80843 1.05414 1.04967 1.26391 0.96556 0.78493 1.00312 1.70564 1.00935 1.28637 1.18470 1.21504 0.92016 0.92268 1.13163 1.16762 0.86043 0.81616 0.76909 1.90780 1.24458 1.74636 1.51520 1.47903 1.10636 1.04943 1.68708 1.22732 0.84686 0.99771 0.97153 1.22000 0.99330 0.97767 0.97985 1.21616 0.93906 0.97540 1.02365 1.21450 0.95032 0.96259 0.97728 0.90884 1.22309 0.93538 0.95943 0.99660 0.90810 1.22932 0.95701 0.99134 1.00084 1.21131 0.91244 0.88040 0.94286 1.44493 1.04022 1.27269 1.57564 1.19009 0.93227 0.99693 1.23548 0.90623 1.24807 0.96309 0.99132 1.00419 1.69972 1.05172 1.38850 1.43019 0.86206 0.77923 0.82640 0.79030 1.21247 1.21648 1.21239 1.21517 0.87938 0.94894 0.93763 1.21799 0.88995 0.91725 0.97976 1.23739 0.83773 0.94477 0.99507 1.20647 0.90308 0.97748 1.04812 1.84322 1.16457 1.37880 1.69806 0.88674 0.89176 0.87783 0.91924 0.84912 0.91949 0.91009 0.91171 0.91881 0.92542 0.92365 0.93803 0.94168 0.93798 0.94626 0.96660 0.88595 0.91373 0.88956 0.90111 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.18 16 2 C 0.19 1.58 8.30 -13.08 -0.11 1.47 16 3 N -0.46 -4.86 7.81 -7.65 -0.06 -4.92 16 4 C -0.07 -0.87 6.68 -83.02 -0.55 -1.42 16 5 C 0.60 8.63 7.67 -12.52 -0.10 8.53 16 6 O -0.54 -8.77 14.21 5.27 0.07 -8.69 16 7 N -0.59 -7.96 2.97 -173.77 -0.52 -8.48 16 8 C 0.08 0.89 6.14 -3.49 -0.02 0.87 16 9 C -0.13 -1.44 6.10 -26.39 -0.16 -1.60 16 10 C -0.12 -1.47 5.02 -26.69 -0.13 -1.60 16 11 C -0.09 -1.24 1.84 -90.50 -0.17 -1.41 16 12 H 0.07 1.17 8.13 -51.92 -0.42 0.75 16 13 C -0.09 -1.68 2.56 -88.47 -0.23 -1.91 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.14 -2.76 5.55 -24.88 -0.14 -2.90 16 16 C 0.18 4.52 5.38 -3.04 -0.02 4.50 16 17 N -0.61 -16.14 3.39 -170.04 -0.58 -16.72 16 18 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -27.99 10.31 55.49 0.57 -27.42 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.15 3.09 5.81 -2.53 -0.01 3.07 16 27 C 0.12 1.65 5.44 -3.71 -0.02 1.63 16 28 C 0.04 0.43 7.44 -35.08 -0.26 0.17 16 29 C -0.08 -0.64 9.95 36.00 0.36 -0.29 16 30 O -0.20 -1.85 10.73 6.53 0.07 -1.78 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 1.47 4.08 -61.66 -0.25 1.22 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 41 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 43 H 0.04 1.13 7.50 -51.92 -0.39 0.74 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.04 0.74 8.03 -51.93 -0.42 0.32 16 46 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 47 H 0.10 1.50 6.46 -51.93 -0.34 1.17 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.12 1.13 6.37 -51.93 -0.33 0.80 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -34.44 395.62 -9.29 -43.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.36 Total: -1.57 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.43 Total: 2.22 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.58 Total: -57.54 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.14 Total: -10.47 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.44 -9.29 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961254594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.685 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds