Wall clock time and date at job start Wed Apr 1 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29931 * 125.37485 * 2 1 4 4 C 1.36068 * 108.47385 * 179.73722 * 3 2 1 5 5 C 1.47421 * 126.44910 * 180.02562 * 4 3 2 6 6 O 1.21610 * 120.00371 * 186.33672 * 5 4 3 7 7 N 1.34782 * 119.99721 * 6.34305 * 5 4 3 8 8 C 1.46926 * 120.63216 * 6.84578 * 7 5 4 9 9 C 1.53624 * 108.53916 * 126.37295 * 8 7 5 10 10 C 1.53034 * 109.24567 * 54.85934 * 9 8 7 11 11 C 1.53039 * 109.53774 * 298.51306 * 10 9 8 12 12 H 1.09009 * 109.49353 * 301.41112 * 11 10 9 13 13 C 1.53004 * 109.52740 * 181.33252 * 11 10 9 14 14 H 1.08997 * 110.88213 * 300.84439 * 13 11 10 15 15 C 1.55151 * 111.00404 * 176.96117 * 13 11 10 16 16 C 1.54367 * 102.91874 * 206.44784 * 15 13 11 17 17 N 1.47020 * 107.29146 * 22.14610 * 16 15 13 18 18 C 1.36933 * 125.65481 * 181.05918 * 17 16 15 19 19 H 1.07998 * 120.00255 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99892 * 0.03051 * 18 17 16 21 21 N 1.31622 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00351 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47167 * 60.00006 * 22 20 18 24 24 H 1.48498 * 109.47474 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46979 * 300.00645 * 22 20 18 26 26 C 1.47429 * 108.70022 * 1.08373 * 17 16 15 27 27 C 1.46923 * 120.62890 * 187.13374 * 7 5 4 28 28 C 1.36095 * 107.10481 * 0.02562 * 4 3 2 29 29 C 1.50698 * 126.52338 * 179.97438 * 28 4 3 30 30 O 1.34047 * 125.37820 * 179.69442 * 2 1 3 31 31 H 1.08996 * 109.47341 * 90.00447 * 1 2 3 32 32 H 1.09008 * 109.47159 * 209.99778 * 1 2 3 33 33 H 1.08993 * 109.47373 * 329.99397 * 1 2 3 34 34 H 1.08991 * 109.58714 * 246.20522 * 8 7 5 35 35 H 1.09007 * 109.58393 * 6.63552 * 8 7 5 36 36 H 1.09003 * 109.63483 * 294.86124 * 9 8 7 37 37 H 1.09005 * 109.42845 * 174.72868 * 9 8 7 38 38 H 1.08991 * 109.46486 * 178.48793 * 10 9 8 39 39 H 1.09006 * 109.44932 * 58.52157 * 10 9 8 40 40 H 1.08991 * 110.72422 * 324.78577 * 15 13 11 41 41 H 1.09009 * 110.72125 * 88.06372 * 15 13 11 42 42 H 1.08994 * 109.85170 * 262.73282 * 16 15 13 43 43 H 1.09010 * 110.03029 * 141.65149 * 16 15 13 44 44 H 0.96998 * 119.99979 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.37312 * 217.03920 * 26 17 16 46 46 H 1.09005 * 110.36542 * 94.71284 * 26 17 16 47 47 H 1.08998 * 109.58835 * 353.36877 * 27 7 5 48 48 H 1.09001 * 109.58919 * 113.79324 * 27 7 5 49 49 H 1.09000 * 109.47081 * 90.00510 * 29 28 4 50 50 H 1.08998 * 109.46745 * 210.00164 * 29 28 4 51 51 H 1.08999 * 109.47487 * 329.99561 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6639 0.0059 5 6 4.7439 1.5439 0.0085 6 8 5.8570 1.0669 -0.1023 7 7 4.5915 2.8772 0.1339 8 6 3.2715 3.4563 0.4183 9 6 3.3896 4.3562 1.6578 10 6 4.4930 5.3911 1.4265 11 6 5.8305 4.6761 1.2215 12 1 6.0548 4.0662 2.0967 13 6 6.9390 5.7120 1.0233 14 1 6.7302 6.3442 0.1604 15 6 8.3238 5.0256 0.8880 16 6 9.2992 6.1162 1.3799 17 7 8.5300 7.0415 2.2248 18 6 9.0254 8.1605 2.8392 19 1 8.3759 8.7777 3.4422 20 6 10.3623 8.5016 2.6869 21 7 11.1536 7.7497 1.9515 22 14 11.0383 10.0277 3.5257 23 1 10.8651 9.9026 4.9953 24 1 12.4818 10.1693 3.2071 25 1 10.3051 11.2247 3.0410 26 6 7.1371 6.5647 2.3014 27 6 5.7411 3.7795 -0.0173 28 6 3.5660 -0.6971 0.0090 29 6 4.7802 -1.5896 0.0151 30 8 2.2831 -1.0929 0.0058 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.9402 4.0474 -0.4355 35 1 2.5559 2.6572 0.6120 36 1 3.6368 3.7492 2.5288 37 1 2.4415 4.8668 1.8269 38 1 4.5617 6.0485 2.2931 39 1 4.2572 5.9812 0.5408 40 1 8.3804 4.1425 1.5243 41 1 8.5261 4.7669 -0.1515 42 1 9.7158 6.6521 0.5272 43 1 10.1025 5.6639 1.9617 44 1 12.0877 7.9883 1.8448 45 1 6.4469 7.4083 2.3052 46 1 6.9941 5.9524 3.1918 47 1 6.6555 3.1937 -0.1112 48 1 5.6071 4.3963 -0.9060 49 1 5.0693 -1.8026 1.0443 50 1 4.5475 -2.5230 -0.4975 51 1 5.6018 -1.0890 -0.4971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961254594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:20 Heat of formation + Delta-G solvation = -9.868009 kcal Electronic energy + Delta-G solvation = -31253.632461 eV Core-core repulsion = 27154.357772 eV Total energy + Delta-G solvation = -4099.274689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.54906 -41.25469 -39.66599 -38.03483 -36.18234 -35.06090 -34.07207 -33.61075 -32.50590 -30.97538 -30.66228 -29.05906 -27.63668 -26.57467 -25.89731 -24.26567 -23.85143 -22.71158 -21.96393 -21.60122 -20.84992 -20.24229 -18.86807 -18.46529 -18.14100 -17.23428 -16.97641 -16.75697 -16.50197 -15.93211 -15.64871 -15.45676 -15.28820 -15.12926 -14.70504 -14.44648 -14.34768 -14.23011 -14.03252 -13.96883 -13.83757 -13.60648 -13.55493 -13.48816 -13.32817 -13.08680 -12.84263 -12.72168 -12.51984 -12.32345 -12.23712 -12.12605 -12.01880 -11.82186 -11.73551 -11.47100 -11.41265 -11.38419 -11.07173 -10.70365 -10.63467 -9.93097 -9.55768 -8.89835 -7.84409 -5.20583 -0.01211 0.90314 1.43135 1.44229 1.48556 1.54820 1.89064 2.13635 2.49790 2.83356 3.32939 3.47274 3.56692 3.61248 3.72418 3.82920 3.94406 4.11758 4.14117 4.20616 4.23672 4.30513 4.36193 4.43205 4.53641 4.55394 4.57459 4.69512 4.70152 4.71664 4.74914 4.78137 4.85244 4.89089 4.92161 4.96108 5.05250 5.05396 5.12916 5.14523 5.16750 5.27447 5.39520 5.40582 5.44849 5.54045 5.66738 5.68510 5.77045 6.20004 6.24852 6.48382 6.99835 7.09949 7.78263 8.44007 9.26093 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.002160 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220512 B =12961.445595 C =13784.892681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.201 3.799 3 N -0.475 5.475 4 C -0.099 4.099 5 C 0.592 3.408 6 O -0.567 6.567 7 N -0.593 5.593 8 C 0.079 3.921 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.072 4.072 12 H 0.058 0.942 13 C -0.076 4.076 14 H 0.080 0.920 15 C -0.126 4.126 16 C 0.186 3.814 17 N -0.630 5.630 18 C -0.243 4.243 19 H 0.084 0.916 20 C -0.072 4.072 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.142 3.858 27 C 0.121 3.879 28 C 0.042 3.958 29 C -0.077 4.077 30 O -0.197 6.197 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.010 0.990 43 H 0.000 1.000 44 H 0.246 0.754 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.317 -19.070 -5.748 33.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.205 5.205 4 C -0.217 4.217 5 C 0.381 3.619 6 O -0.448 6.448 7 N -0.323 5.323 8 C -0.043 4.043 9 C -0.162 4.162 10 C -0.151 4.151 11 C -0.092 4.092 12 H 0.076 0.924 13 C -0.095 4.095 14 H 0.098 0.902 15 C -0.165 4.165 16 C 0.061 3.939 17 N -0.356 5.356 18 C -0.372 4.372 19 H 0.102 0.898 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.810 3.190 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.017 3.983 27 C -0.002 4.002 28 C -0.015 4.015 29 C -0.133 4.133 30 O -0.085 6.085 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.018 0.982 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.119 0.881 50 H 0.124 0.876 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.796 -18.584 -5.789 33.119 hybrid contribution 1.566 0.393 0.469 1.682 sum -25.230 -18.191 -5.320 31.556 Atomic orbital electron populations 1.20666 0.77253 1.07011 1.06577 1.27457 0.98079 0.77604 0.97559 1.70481 1.00293 1.29631 1.20107 1.21325 0.92191 0.92706 1.15443 1.17113 0.86418 0.82038 0.76375 1.90754 1.25787 1.75235 1.52987 1.47993 1.11140 1.04746 1.68428 1.22885 0.83642 1.00066 0.97661 1.21955 0.99835 0.97124 0.97333 1.21598 0.92971 0.97821 1.02743 1.21279 0.95159 0.95304 0.97447 0.92359 1.22171 0.93380 0.95957 0.98032 0.90157 1.22775 0.95456 0.97296 1.00925 1.20882 0.91752 0.88884 0.92408 1.44842 1.06327 1.27043 1.57437 1.19460 0.93734 1.00473 1.23525 0.89837 1.25738 0.96738 1.02469 1.01504 1.70216 1.04993 1.40588 1.44521 0.85098 0.76703 0.79025 0.78182 1.20274 1.22112 1.19982 1.21690 0.85505 0.95671 0.95411 1.21647 0.88920 0.91599 0.97991 1.24041 0.84732 0.94279 0.98452 1.20678 0.89004 0.98238 1.05426 1.84360 1.16004 1.38247 1.69865 0.86854 0.87125 0.86567 0.90885 0.84371 0.92926 0.88348 0.91516 0.90737 0.92244 0.90496 0.97135 0.98181 0.94476 0.93567 0.96585 0.90492 0.90163 0.88104 0.87551 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 71.24 0.75 0.57 16 2 C 0.20 2.86 8.30 88.39 0.73 3.60 16 3 N -0.47 -9.35 7.81 -293.04 -2.29 -11.64 16 4 C -0.10 -2.37 6.68 40.41 0.27 -2.10 16 5 C 0.59 17.08 7.67 86.66 0.66 17.75 16 6 O -0.57 -19.11 14.21 -4.06 -0.06 -19.17 16 7 N -0.59 -15.51 2.97 -821.94 -2.44 -17.94 16 8 C 0.08 1.62 6.14 86.51 0.53 2.15 16 9 C -0.12 -2.40 6.10 30.82 0.19 -2.21 16 10 C -0.11 -2.61 5.02 30.62 0.15 -2.45 16 11 C -0.07 -2.04 1.84 -10.72 -0.02 -2.06 16 12 H 0.06 1.84 8.13 -2.38 -0.02 1.82 16 13 C -0.08 -2.63 2.56 -9.40 -0.02 -2.66 16 14 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 15 C -0.13 -5.05 5.55 31.80 0.18 -4.87 16 16 C 0.19 9.87 5.38 86.74 0.47 10.34 16 17 N -0.63 -34.23 3.39 -691.89 -2.35 -36.57 16 18 C -0.24 -14.21 10.28 84.03 0.86 -13.35 16 19 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 21 N -0.95 -60.12 10.31 21.65 0.22 -59.90 16 22 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.14 6.01 5.81 86.85 0.50 6.51 16 27 C 0.12 3.32 5.44 86.36 0.47 3.79 16 28 C 0.04 0.84 7.44 25.19 0.19 1.03 16 29 C -0.08 -1.22 9.95 71.24 0.71 -0.51 16 30 O -0.20 -3.30 10.73 0.44 0.00 -3.30 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.14 2.79 4.08 -21.61 -0.09 2.70 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.07 1.60 7.33 -2.39 -0.02 1.58 16 39 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 41 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 42 H 0.01 0.61 7.38 -2.39 -0.02 0.60 16 43 H 0.00 0.00 7.50 -2.38 -0.02 -0.02 16 44 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 46 H 0.02 0.69 8.03 -2.38 -0.02 0.67 16 47 H 0.08 2.43 6.46 -2.39 -0.02 2.41 16 48 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 49 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 51 H 0.10 1.95 6.37 -2.39 -0.02 1.94 16 Total: -1.00 -77.97 395.62 3.06 -74.91 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.85 Total: 12.57 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.09 Total: 11.71 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -6.85 Total: -126.05 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -77.97 3.06 -74.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961254594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.043 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds