Wall clock time and date at job start Wed Apr 1 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30011 * 127.33853 * 2 1 4 4 O 1.20653 * 112.30614 * 180.02562 * 3 2 1 5 5 C 1.33499 * 113.15418 * 359.75398 * 4 3 2 6 6 C 1.37360 * 106.34257 * 0.39576 * 5 4 3 7 7 C 1.47398 * 128.56695 * 179.91595 * 6 5 4 8 8 O 1.21605 * 120.00059 * 146.59095 * 7 6 5 9 9 N 1.34780 * 119.99532 * 326.58946 * 7 6 5 10 10 C 1.46924 * 120.62936 * 355.00409 * 9 7 6 11 11 C 1.53193 * 108.77435 * 233.63080 * 10 9 7 12 12 C 1.53043 * 109.31104 * 305.36488 * 11 10 9 13 13 C 1.52997 * 109.45970 * 181.38515 * 12 11 10 14 14 H 1.09006 * 109.50201 * 300.04338 * 13 12 11 15 15 C 1.53042 * 109.52814 * 60.12174 * 13 12 11 16 16 C 1.53036 * 109.54246 * 181.33304 * 15 13 12 17 17 C 1.53190 * 109.31233 * 298.63366 * 16 15 13 18 18 N 1.46933 * 108.77511 * 54.63509 * 17 16 15 19 19 C 1.36940 * 120.62890 * 126.38900 * 18 17 16 20 20 H 1.07998 * 119.99877 * 207.90300 * 19 18 17 21 21 C 1.38815 * 119.99623 * 27.90490 * 19 18 17 22 22 N 1.31611 * 120.00593 * 16.11008 * 21 19 18 23 23 Si 1.86802 * 119.99462 * 196.10879 * 21 19 18 24 24 H 1.48501 * 109.47175 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47101 * 120.00103 * 23 21 19 26 26 H 1.48492 * 109.47240 * 239.99948 * 23 21 19 27 27 C 1.46924 * 118.73811 * 306.39355 * 18 17 16 28 28 C 1.53043 * 109.52678 * 61.37532 * 12 11 10 29 29 C 1.46923 * 120.62755 * 175.02884 * 9 7 6 30 30 H 1.08999 * 109.47274 * 270.00080 * 1 2 3 31 31 H 1.08997 * 109.47196 * 29.99967 * 1 2 3 32 32 H 1.08999 * 109.47346 * 149.99989 * 1 2 3 33 33 H 1.07996 * 126.82753 * 180.29908 * 5 4 3 34 34 H 1.09003 * 109.58294 * 113.84585 * 10 9 7 35 35 H 1.08993 * 109.59181 * 353.41773 * 10 9 7 36 36 H 1.09005 * 109.49999 * 185.42119 * 11 10 9 37 37 H 1.08992 * 109.50107 * 65.31695 * 11 10 9 38 38 H 1.08999 * 109.46766 * 301.35819 * 12 11 10 39 39 H 1.09000 * 109.45664 * 301.35613 * 15 13 12 40 40 H 1.08999 * 109.45779 * 61.32031 * 15 13 12 41 41 H 1.08995 * 109.49642 * 58.58435 * 16 15 13 42 42 H 1.09002 * 109.49575 * 178.68062 * 16 15 13 43 43 H 1.09002 * 109.58600 * 174.41980 * 17 16 15 44 44 H 1.08999 * 109.58637 * 294.70384 * 17 16 15 45 45 H 0.96998 * 120.00116 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58472 * 293.81652 * 27 18 17 47 47 H 1.08994 * 109.58338 * 173.39417 * 27 18 17 48 48 H 1.09003 * 109.49940 * 58.57440 * 28 12 11 49 49 H 1.08994 * 109.50097 * 178.67354 * 28 12 11 50 50 H 1.09000 * 109.58328 * 246.15499 * 29 9 7 51 51 H 1.09000 * 109.58844 * 6.57827 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0043 6 6 2.3991 -1.1697 -0.0007 7 6 2.0400 -2.5993 -0.0002 8 8 1.0365 -2.9739 0.5755 9 7 2.8239 -3.4912 -0.6378 10 6 3.9780 -3.0426 -1.4286 11 6 3.8672 -3.6295 -2.8393 12 6 3.7227 -5.1501 -2.7449 13 6 3.6464 -5.7433 -4.1532 14 1 2.7854 -5.3278 -4.6769 15 6 4.9250 -5.4021 -4.9219 16 6 4.8349 -5.9668 -6.3415 17 6 4.7044 -7.4916 -6.2728 18 7 3.5605 -7.8301 -5.4150 19 6 2.5676 -8.6562 -5.8700 20 1 1.5650 -8.5611 -5.4799 21 6 2.8498 -9.6157 -6.8326 22 7 4.0977 -9.9531 -7.0795 23 14 1.4581 -10.4279 -7.7777 24 1 0.1587 -9.8767 -7.3163 25 1 1.6222 -10.1589 -9.2290 26 1 1.4873 -11.8933 -7.5396 27 6 3.5023 -7.2655 -4.0598 28 6 2.4453 -5.4959 -1.9763 29 6 2.5401 -4.9304 -0.5557 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.5966 -1.1195 0.0095 34 1 4.8990 -3.3894 -0.9599 35 1 3.9816 -1.9541 -1.4850 36 1 4.7647 -3.3840 -3.4071 37 1 2.9938 -3.2114 -3.3397 38 1 4.5845 -5.5652 -2.2224 39 1 5.0428 -4.3195 -4.9685 40 1 5.7832 -5.8390 -4.4113 41 1 3.9628 -5.5493 -6.8444 42 1 5.7359 -5.7033 -6.8956 43 1 4.5406 -7.8897 -7.2742 44 1 5.6162 -7.9179 -5.8547 45 1 4.2948 -10.6239 -7.7519 46 1 4.3151 -7.6733 -3.4589 47 1 2.5454 -7.5145 -3.6011 48 1 1.5853 -5.0600 -2.4849 49 1 2.3305 -6.5788 -1.9297 50 1 3.3439 -5.4310 -0.0158 51 1 1.5949 -5.0874 -0.0360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961400968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:05 Heat of formation + Delta-G solvation = 39.364856 kcal Electronic energy + Delta-G solvation = -31411.866979 eV Core-core repulsion = 27314.727187 eV Total energy + Delta-G solvation = -4097.139792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.29729 -40.46270 -38.59480 -36.80332 -34.88173 -34.24203 -32.95516 -32.07287 -31.23219 -30.31772 -29.38374 -28.93554 -25.90664 -25.39434 -24.24879 -23.49753 -21.95265 -21.66831 -21.47333 -20.52853 -19.57211 -19.05565 -18.14458 -17.83564 -17.11889 -16.63966 -16.37074 -15.55432 -14.97288 -14.79752 -14.41569 -14.33944 -14.01114 -13.87796 -13.71719 -13.60787 -13.51138 -13.26601 -13.17767 -12.97902 -12.82563 -12.50714 -12.47862 -12.11844 -11.88402 -11.64970 -11.40042 -11.24263 -10.98433 -10.87540 -10.72886 -10.48812 -10.36193 -10.27665 -10.25147 -10.15617 -10.11371 -9.95731 -9.84770 -9.46129 -9.28834 -8.88001 -8.46493 -6.65429 -5.78366 -3.21158 0.71893 1.44696 2.35832 2.68313 2.88152 3.36279 3.44413 3.46464 3.66507 3.90844 4.25992 4.47347 4.49027 4.53759 4.73195 4.78996 4.91800 4.94945 5.10206 5.15320 5.21216 5.22602 5.32938 5.35354 5.37766 5.50419 5.55843 5.58074 5.66231 5.71435 5.75569 5.79319 5.87077 5.98411 6.02690 6.17865 6.21105 6.31780 6.39632 6.44161 6.47231 6.64451 6.70584 6.84573 6.90249 7.02596 7.05342 7.41559 7.69143 7.78675 7.79713 7.84427 8.45876 9.22199 9.85988 10.42316 11.29730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002280 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.325293 B =12278.679270 C =12848.275957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.358 5.358 4 O 0.098 5.902 5 C -0.013 4.013 6 C -0.247 4.247 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.600 5.600 10 C 0.093 3.907 11 C -0.130 4.130 12 C -0.079 4.079 13 C -0.097 4.097 14 H 0.065 0.935 15 C -0.103 4.103 16 C -0.143 4.143 17 C 0.169 3.831 18 N -0.593 5.593 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.153 3.847 28 C -0.131 4.131 29 C 0.113 3.887 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.071 0.929 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 18.699 13.731 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 N -0.065 5.065 4 O 0.038 5.962 5 C -0.095 4.095 6 C -0.254 4.254 7 C 0.382 3.618 8 O -0.407 6.407 9 N -0.333 5.333 10 C -0.029 4.029 11 C -0.168 4.168 12 C -0.098 4.098 13 C -0.118 4.118 14 H 0.083 0.917 15 C -0.140 4.140 16 C -0.183 4.183 17 C 0.044 3.956 18 N -0.315 5.315 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.027 3.973 28 C -0.169 4.169 29 C -0.008 4.008 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.222 19.655 13.916 24.113 hybrid contribution -0.453 -1.377 -0.658 1.592 sum 0.769 18.278 13.257 22.593 Atomic orbital electron populations 1.20221 0.84864 1.04081 1.04096 1.24864 0.98955 0.86245 0.99517 1.73674 0.89242 1.23512 1.20107 1.84585 1.21554 1.23011 1.67076 1.26582 1.00287 0.83917 0.98681 1.22339 0.93022 0.95696 1.14347 1.16886 0.82861 0.83137 0.78929 1.90805 1.25421 1.79597 1.44828 1.47980 1.29047 1.07209 1.49103 1.22169 0.88248 0.99986 0.92530 1.22033 1.03141 0.96637 0.95013 1.21151 0.97583 0.93967 0.97090 1.21683 0.98158 0.98824 0.93102 0.91675 1.21477 0.97237 0.98499 0.96818 1.22186 0.99778 1.00917 0.95371 1.20783 0.88963 0.88397 0.97502 1.44051 1.24397 1.53960 1.09067 1.19222 0.88892 1.09594 1.20199 0.91749 1.25035 0.96042 0.96883 1.01793 1.70029 1.16915 1.33040 1.34855 0.86247 0.81859 0.78938 0.79891 1.20272 1.21602 1.21736 1.20940 0.98516 0.89816 0.88034 1.22033 0.98664 1.02000 0.94195 1.21749 1.02708 0.78073 0.98264 0.89446 0.90211 0.89379 0.75526 0.90696 0.89799 0.90018 0.91515 0.91134 0.93678 0.92957 0.92967 0.93549 0.89566 0.96650 0.93737 0.96737 0.92910 0.91473 0.89631 0.91088 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.40 36.00 0.37 -0.28 16 2 C 0.07 0.70 7.59 -79.77 -0.61 0.09 16 3 N -0.36 -3.81 12.01 34.78 0.42 -3.39 16 4 O 0.10 0.85 11.06 18.64 0.21 1.06 16 5 C -0.01 -0.09 9.97 30.41 0.30 0.22 16 6 C -0.25 -2.43 5.75 -102.89 -0.59 -3.02 16 7 C 0.59 6.90 7.66 -12.53 -0.10 6.81 16 8 O -0.53 -7.85 16.43 5.27 0.09 -7.76 16 9 N -0.60 -5.93 2.97 -174.05 -0.52 -6.44 16 10 C 0.09 0.69 5.47 -3.71 -0.02 0.67 16 11 C -0.13 -1.22 5.05 -26.61 -0.13 -1.36 16 12 C -0.08 -0.91 1.74 -90.58 -0.16 -1.07 16 13 C -0.10 -1.51 1.92 -90.50 -0.17 -1.68 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.10 -1.58 4.86 -26.69 -0.13 -1.71 16 16 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 17 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 18 N -0.59 -14.49 3.00 -172.32 -0.52 -15.01 16 19 C -0.25 -6.76 9.59 -15.06 -0.14 -6.91 16 20 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 21 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 22 N -0.90 -26.06 11.12 55.49 0.62 -25.44 16 23 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.15 3.01 5.27 -3.71 -0.02 2.99 16 28 C -0.13 -1.51 5.05 -26.61 -0.13 -1.64 16 29 C 0.11 1.17 6.44 -3.71 -0.02 1.15 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.23 0.58 6.88 -52.49 -0.36 0.22 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.50 4.37 -51.93 -0.23 0.27 16 36 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.59 6.34 -51.93 -0.33 0.26 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 2.29 6.01 -51.93 -0.31 1.98 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.09 1.04 6.49 -51.93 -0.34 0.70 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -32.57 390.70 -8.73 -41.31 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.06 Total: -2.12 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.82 Total: -4.66 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.00 Total: -50.29 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.29 Total: -6.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.57 -8.73 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961400968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.670 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds