Wall clock time and date at job start Wed Apr 1 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30011 * 127.33853 * 2 1 4 4 O 1.20653 * 112.30614 * 180.02562 * 3 2 1 5 5 C 1.33499 * 113.15418 * 359.75398 * 4 3 2 6 6 C 1.37360 * 106.34257 * 0.39576 * 5 4 3 7 7 C 1.47398 * 128.56695 * 179.91595 * 6 5 4 8 8 O 1.21605 * 120.00059 * 146.59095 * 7 6 5 9 9 N 1.34780 * 119.99532 * 326.58946 * 7 6 5 10 10 C 1.46924 * 120.62936 * 355.00409 * 9 7 6 11 11 C 1.53193 * 108.77435 * 233.63080 * 10 9 7 12 12 C 1.53043 * 109.31104 * 305.36488 * 11 10 9 13 13 C 1.52997 * 109.45970 * 181.38515 * 12 11 10 14 14 H 1.09006 * 109.50201 * 300.04338 * 13 12 11 15 15 C 1.53042 * 109.52814 * 60.12174 * 13 12 11 16 16 C 1.53036 * 109.54246 * 181.33304 * 15 13 12 17 17 C 1.53190 * 109.31233 * 298.63366 * 16 15 13 18 18 N 1.46933 * 108.77511 * 54.63509 * 17 16 15 19 19 C 1.36940 * 120.62890 * 126.38900 * 18 17 16 20 20 H 1.07998 * 119.99877 * 207.90300 * 19 18 17 21 21 C 1.38815 * 119.99623 * 27.90490 * 19 18 17 22 22 N 1.31611 * 120.00593 * 16.11008 * 21 19 18 23 23 Si 1.86802 * 119.99462 * 196.10879 * 21 19 18 24 24 H 1.48501 * 109.47175 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47101 * 120.00103 * 23 21 19 26 26 H 1.48492 * 109.47240 * 239.99948 * 23 21 19 27 27 C 1.46924 * 118.73811 * 306.39355 * 18 17 16 28 28 C 1.53043 * 109.52678 * 61.37532 * 12 11 10 29 29 C 1.46923 * 120.62755 * 175.02884 * 9 7 6 30 30 H 1.08999 * 109.47274 * 270.00080 * 1 2 3 31 31 H 1.08997 * 109.47196 * 29.99967 * 1 2 3 32 32 H 1.08999 * 109.47346 * 149.99989 * 1 2 3 33 33 H 1.07996 * 126.82753 * 180.29908 * 5 4 3 34 34 H 1.09003 * 109.58294 * 113.84585 * 10 9 7 35 35 H 1.08993 * 109.59181 * 353.41773 * 10 9 7 36 36 H 1.09005 * 109.49999 * 185.42119 * 11 10 9 37 37 H 1.08992 * 109.50107 * 65.31695 * 11 10 9 38 38 H 1.08999 * 109.46766 * 301.35819 * 12 11 10 39 39 H 1.09000 * 109.45664 * 301.35613 * 15 13 12 40 40 H 1.08999 * 109.45779 * 61.32031 * 15 13 12 41 41 H 1.08995 * 109.49642 * 58.58435 * 16 15 13 42 42 H 1.09002 * 109.49575 * 178.68062 * 16 15 13 43 43 H 1.09002 * 109.58600 * 174.41980 * 17 16 15 44 44 H 1.08999 * 109.58637 * 294.70384 * 17 16 15 45 45 H 0.96998 * 120.00116 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58472 * 293.81652 * 27 18 17 47 47 H 1.08994 * 109.58338 * 173.39417 * 27 18 17 48 48 H 1.09003 * 109.49940 * 58.57440 * 28 12 11 49 49 H 1.08994 * 109.50097 * 178.67354 * 28 12 11 50 50 H 1.09000 * 109.58328 * 246.15499 * 29 9 7 51 51 H 1.09000 * 109.58844 * 6.57827 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0043 6 6 2.3991 -1.1697 -0.0007 7 6 2.0400 -2.5993 -0.0002 8 8 1.0365 -2.9739 0.5755 9 7 2.8239 -3.4912 -0.6378 10 6 3.9780 -3.0426 -1.4286 11 6 3.8672 -3.6295 -2.8393 12 6 3.7227 -5.1501 -2.7449 13 6 3.6464 -5.7433 -4.1532 14 1 2.7854 -5.3278 -4.6769 15 6 4.9250 -5.4021 -4.9219 16 6 4.8349 -5.9668 -6.3415 17 6 4.7044 -7.4916 -6.2728 18 7 3.5605 -7.8301 -5.4150 19 6 2.5676 -8.6562 -5.8700 20 1 1.5650 -8.5611 -5.4799 21 6 2.8498 -9.6157 -6.8326 22 7 4.0977 -9.9531 -7.0795 23 14 1.4581 -10.4279 -7.7777 24 1 0.1587 -9.8767 -7.3163 25 1 1.6222 -10.1589 -9.2290 26 1 1.4873 -11.8933 -7.5396 27 6 3.5023 -7.2655 -4.0598 28 6 2.4453 -5.4959 -1.9763 29 6 2.5401 -4.9304 -0.5557 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.5966 -1.1195 0.0095 34 1 4.8990 -3.3894 -0.9599 35 1 3.9816 -1.9541 -1.4850 36 1 4.7647 -3.3840 -3.4071 37 1 2.9938 -3.2114 -3.3397 38 1 4.5845 -5.5652 -2.2224 39 1 5.0428 -4.3195 -4.9685 40 1 5.7832 -5.8390 -4.4113 41 1 3.9628 -5.5493 -6.8444 42 1 5.7359 -5.7033 -6.8956 43 1 4.5406 -7.8897 -7.2742 44 1 5.6162 -7.9179 -5.8547 45 1 4.2948 -10.6239 -7.7519 46 1 4.3151 -7.6733 -3.4589 47 1 2.5454 -7.5145 -3.6011 48 1 1.5853 -5.0600 -2.4849 49 1 2.3305 -6.5788 -1.9297 50 1 3.3439 -5.4310 -0.0158 51 1 1.5949 -5.0874 -0.0360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961400968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:04 Heat of formation + Delta-G solvation = 20.449692 kcal Electronic energy + Delta-G solvation = -31412.687202 eV Core-core repulsion = 27314.727187 eV Total energy + Delta-G solvation = -4097.960015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.99220 -41.31942 -39.81091 -38.03690 -35.66234 -35.53319 -34.13988 -33.19373 -32.43659 -31.67454 -30.62594 -29.71631 -27.23542 -26.83960 -25.19417 -24.57471 -23.16115 -23.01423 -22.21755 -21.60491 -20.55950 -20.39225 -18.86888 -18.70458 -18.47450 -17.80412 -17.17298 -16.86772 -16.38519 -15.87240 -15.56811 -15.50860 -15.14825 -15.01712 -14.78637 -14.66314 -14.50487 -14.31219 -14.15946 -14.10505 -13.97234 -13.67165 -13.51670 -13.43202 -13.02085 -12.93074 -12.80149 -12.39863 -12.34791 -12.19751 -12.16321 -11.98539 -11.76046 -11.68622 -11.51212 -11.33831 -11.22911 -10.98129 -10.96052 -10.74664 -10.60739 -10.51493 -9.68868 -8.64223 -7.86777 -5.32161 0.11000 0.71693 1.43201 1.45357 1.55474 1.62945 1.95594 2.25894 2.49851 2.98094 3.26885 3.28911 3.57988 3.65424 3.77983 3.85790 3.87679 3.98212 4.14721 4.25271 4.30176 4.37296 4.37417 4.47436 4.51907 4.55346 4.57578 4.58349 4.65016 4.71447 4.76454 4.82730 4.91784 4.93277 4.99195 5.03133 5.07400 5.12315 5.15517 5.19001 5.25305 5.37704 5.43142 5.44855 5.54714 5.60474 5.64081 5.72077 5.84404 6.28904 6.40299 6.99531 7.16272 7.19159 7.89832 8.39571 9.18562 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.002280 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.325293 B =12278.679270 C =12848.275957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.378 5.378 4 O 0.101 5.899 5 C 0.024 3.976 6 C -0.276 4.276 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.597 5.597 10 C 0.092 3.908 11 C -0.126 4.126 12 C -0.069 4.069 13 C -0.085 4.085 14 H 0.046 0.954 15 C -0.096 4.096 16 C -0.134 4.134 17 C 0.173 3.827 18 N -0.613 5.613 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.151 3.849 28 C -0.127 4.127 29 C 0.119 3.881 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.276 0.724 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.047 0.953 44 H -0.005 1.005 45 H 0.249 0.751 46 H 0.013 0.987 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.093 0.907 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 20.881 14.698 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 N -0.086 5.086 4 O 0.041 5.959 5 C -0.057 4.057 6 C -0.283 4.283 7 C 0.382 3.618 8 O -0.455 6.455 9 N -0.328 5.328 10 C -0.029 4.029 11 C -0.164 4.164 12 C -0.088 4.088 13 C -0.105 4.105 14 H 0.065 0.935 15 C -0.133 4.133 16 C -0.173 4.173 17 C 0.048 3.952 18 N -0.336 5.336 19 C -0.389 4.389 20 H 0.079 0.921 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.791 3.209 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.026 3.974 28 C -0.165 4.165 29 C -0.003 4.003 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.291 0.709 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.013 0.987 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.076 21.872 14.889 26.637 hybrid contribution -0.999 -2.094 -0.950 2.507 sum 2.076 19.778 13.939 24.285 Atomic orbital electron populations 1.20220 0.84633 1.04065 1.04286 1.25148 0.99651 0.86769 0.99753 1.73679 0.89901 1.23920 1.21074 1.84562 1.20748 1.23965 1.66592 1.27341 1.00763 0.82814 0.94827 1.22217 0.94338 0.94612 1.17180 1.17124 0.82307 0.83929 0.78417 1.90781 1.27381 1.80389 1.46920 1.48050 1.29424 1.06636 1.48732 1.22426 0.88337 1.01170 0.90975 1.21995 1.03411 0.94305 0.96672 1.21062 0.97796 0.95793 0.94170 1.21486 0.97837 0.95369 0.95801 0.93505 1.21457 0.96962 1.00681 0.94227 1.22037 1.00335 0.96819 0.98156 1.20616 0.87743 0.91782 0.95079 1.44341 1.24035 1.54083 1.11162 1.19501 0.89576 1.09644 1.20152 0.92108 1.25750 0.98116 0.97910 1.02953 1.70175 1.18644 1.33802 1.35490 0.85275 0.79583 0.77720 0.78311 1.19356 1.21653 1.21813 1.21109 0.98062 0.92673 0.85603 1.21944 0.98240 1.01197 0.95095 1.21640 1.02786 0.78787 0.97094 0.89184 0.89082 0.90451 0.70863 0.87251 0.87841 0.88029 0.93027 0.89624 0.89815 0.92260 0.93917 0.91471 0.93446 0.98700 0.94176 0.96904 0.93589 0.93396 0.90852 0.88921 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.40 71.24 0.74 -0.57 16 2 C 0.05 0.97 7.59 45.16 0.34 1.31 16 3 N -0.38 -7.38 12.01 -44.78 -0.54 -7.92 16 4 O 0.10 1.43 11.06 76.94 0.85 2.28 16 5 C 0.02 0.22 9.97 67.61 0.67 0.90 16 6 C -0.28 -4.81 5.75 -18.74 -0.11 -4.92 16 7 C 0.59 12.92 7.66 86.65 0.66 13.58 16 8 O -0.57 -17.19 16.43 -4.05 -0.07 -17.26 16 9 N -0.60 -10.15 2.97 -822.83 -2.45 -12.59 16 10 C 0.09 0.89 5.47 86.36 0.47 1.37 16 11 C -0.13 -1.82 5.05 30.67 0.15 -1.67 16 12 C -0.07 -1.40 1.74 -10.77 -0.02 -1.42 16 13 C -0.08 -2.49 1.92 -10.72 -0.02 -2.51 16 14 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 15 C -0.10 -2.64 4.86 30.62 0.15 -2.49 16 16 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 17 C 0.17 8.32 5.30 86.36 0.46 8.77 16 18 N -0.61 -30.63 3.00 -699.10 -2.09 -32.72 16 19 C -0.26 -14.37 9.59 84.03 0.81 -13.56 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 21 C -0.05 -2.95 4.94 84.86 0.42 -2.53 16 22 N -0.93 -55.68 11.12 21.65 0.24 -55.44 16 23 Si 0.96 45.46 29.58 68.60 2.03 47.49 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 27 C 0.15 5.92 5.27 86.36 0.46 6.38 16 28 C -0.13 -2.80 5.05 30.67 0.15 -2.64 16 29 C 0.12 2.26 6.44 86.36 0.56 2.81 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.28 -0.42 6.88 -2.91 -0.02 -0.44 16 34 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.10 0.64 4.37 -2.39 -0.01 0.62 16 36 H 0.10 1.14 6.34 -2.38 -0.02 1.12 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.74 6.34 -2.39 -0.02 1.72 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.62 6.01 -2.39 -0.01 2.60 16 44 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 1.83 6.51 -2.39 -0.02 1.81 16 48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.07 1.79 6.49 -2.39 -0.02 1.77 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 51 H 0.07 1.73 6.99 -2.39 -0.02 1.72 16 Total: -1.00 -75.79 390.70 5.00 -70.79 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.93 Total: 7.17 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.09 Total: -1.80 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.84 Total: -108.67 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.78 Total: -14.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.79 5.00 -70.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961400968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.240 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds