Wall clock time and date at job start Wed Apr 1 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30015 * 127.33514 * 2 1 4 4 O 1.20665 * 112.29973 * 180.02562 * 3 2 1 5 5 C 1.33492 * 113.15605 * 359.71356 * 4 3 2 6 6 C 1.50701 * 126.82507 * 180.30919 * 5 4 3 7 7 C 1.37360 * 106.34130 * 0.45285 * 5 4 3 8 8 C 1.47398 * 128.56156 * 179.85331 * 7 5 4 9 9 O 1.21613 * 120.00307 * 269.67725 * 8 7 5 10 10 N 1.34771 * 120.00212 * 89.67886 * 8 7 5 11 11 C 1.46934 * 120.62964 * 359.97438 * 10 8 7 12 12 C 1.53188 * 108.77511 * 233.63214 * 11 10 8 13 13 C 1.53036 * 109.31361 * 305.36100 * 12 11 10 14 14 C 1.53043 * 109.53798 * 61.36535 * 13 12 11 15 15 H 1.09001 * 109.51900 * 58.60648 * 14 13 12 16 16 C 1.52995 * 109.49898 * 178.68042 * 14 13 12 17 17 H 1.08999 * 109.87330 * 180.86796 * 16 14 13 18 18 C 1.54329 * 110.00820 * 59.77528 * 16 14 13 19 19 C 1.55161 * 102.94019 * 218.31623 * 18 16 14 20 20 C 1.54906 * 101.58371 * 35.50258 * 19 18 16 21 21 N 1.47022 * 109.88619 * 301.89042 * 16 14 13 22 22 C 1.36938 * 125.64844 * 298.54437 * 21 16 14 23 23 H 1.08000 * 119.99479 * 345.69861 * 22 21 16 24 24 C 1.38813 * 120.00066 * 165.69274 * 22 21 16 25 25 N 1.31614 * 119.99769 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99786 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47025 * 90.00204 * 26 24 22 28 28 H 1.48497 * 109.46860 * 209.99946 * 26 24 22 29 29 H 1.48498 * 109.47051 * 330.00133 * 26 24 22 30 30 C 1.46925 * 120.63656 * 179.97438 * 10 8 7 31 31 H 1.09005 * 109.47389 * 269.95657 * 1 2 3 32 32 H 1.08998 * 109.47259 * 29.95926 * 1 2 3 33 33 H 1.09007 * 109.47313 * 149.96205 * 1 2 3 34 34 H 1.08997 * 109.47223 * 270.16806 * 6 5 4 35 35 H 1.09000 * 109.47192 * 30.17103 * 6 5 4 36 36 H 1.09006 * 109.46678 * 150.17319 * 6 5 4 37 37 H 1.09000 * 109.58325 * 353.41936 * 11 10 8 38 38 H 1.09003 * 109.58509 * 113.84230 * 11 10 8 39 39 H 1.08995 * 109.50349 * 65.31514 * 12 11 10 40 40 H 1.09004 * 109.49621 * 185.38337 * 12 11 10 41 41 H 1.09003 * 109.45983 * 301.34668 * 13 12 11 42 42 H 1.09004 * 109.46385 * 181.39086 * 13 12 11 43 43 H 1.08999 * 110.72045 * 336.67627 * 18 16 14 44 44 H 1.08997 * 110.71925 * 99.95461 * 18 16 14 45 45 H 1.08998 * 111.00241 * 277.42532 * 19 18 16 46 46 H 1.08999 * 111.00085 * 153.57766 * 19 18 16 47 47 H 1.09002 * 110.36543 * 204.15481 * 20 19 18 48 48 H 1.08997 * 110.46218 * 81.87176 * 20 19 18 49 49 H 0.97002 * 119.99717 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58154 * 6.58775 * 30 10 8 51 51 H 1.08989 * 109.70636 * 246.22798 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0052 6 6 4.9712 -1.3246 0.0128 7 6 2.3991 -1.1696 -0.0005 8 6 2.0400 -2.5992 -0.0008 9 8 1.8915 -3.1887 -1.0541 10 7 1.8763 -3.2531 1.1662 11 6 2.0528 -2.5547 2.4468 12 6 3.0619 -3.3322 3.2975 13 6 2.5979 -4.7843 3.4323 14 6 2.5335 -5.4317 2.0471 15 1 3.5162 -5.3862 1.5778 16 6 2.1011 -6.8927 2.1859 17 1 2.0681 -7.3643 1.2037 18 6 0.7115 -6.9712 2.8527 19 6 0.8379 -8.2130 3.7743 20 6 2.3131 -8.1093 4.2354 21 7 3.0435 -7.6128 3.0549 22 6 4.3786 -7.7919 2.8089 23 1 4.7769 -7.5979 1.8239 24 6 5.2200 -8.2226 3.8255 25 7 4.7344 -8.4593 5.0256 26 14 7.0414 -8.4663 3.4900 27 1 7.7685 -7.2005 3.7625 28 1 7.5678 -9.5391 4.3715 29 1 7.2357 -8.8528 2.0694 30 6 1.5179 -4.6779 1.1822 31 1 -0.3634 -0.0008 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8897 -0.5144 34 1 5.2951 -1.5003 -1.0129 35 1 5.7147 -0.7179 0.5298 36 1 4.8597 -2.2791 0.5272 37 1 2.4274 -1.5474 2.2650 38 1 1.0976 -2.5027 2.9694 39 1 4.0398 -3.3060 2.8167 40 1 3.1304 -2.8784 4.2862 41 1 1.6092 -4.8084 3.8908 42 1 3.3014 -5.3338 4.0578 43 1 0.5141 -6.0740 3.4394 44 1 -0.0669 -7.1234 2.1050 45 1 0.6670 -9.1331 3.2156 46 1 0.1574 -8.1407 4.6227 47 1 2.6886 -9.0895 4.5291 48 1 2.4053 -7.4051 5.0622 49 1 5.3223 -8.7607 5.7359 50 1 1.5397 -5.0715 0.1660 51 1 0.5189 -4.8009 1.6004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963261899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:12 Heat of formation + Delta-G solvation = 43.326748 kcal Electronic energy + Delta-G solvation = -32518.682833 eV Core-core repulsion = 28421.714842 eV Total energy + Delta-G solvation = -4096.967991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.05254 -40.19480 -38.35860 -36.43115 -34.79236 -33.81988 -32.83617 -32.26383 -31.27649 -29.37600 -29.02812 -28.30825 -26.76692 -25.77019 -24.55742 -23.76126 -22.57509 -21.37161 -20.62031 -20.14580 -19.28173 -18.36928 -18.06044 -17.59832 -16.73656 -16.47226 -15.90084 -15.18918 -15.06211 -14.57653 -14.40254 -14.17800 -13.92750 -13.91190 -13.75253 -13.55309 -13.38618 -13.25087 -12.98828 -12.91929 -12.78314 -12.58923 -12.18755 -12.11406 -11.89371 -11.59308 -11.31311 -11.15069 -10.92854 -10.86862 -10.75092 -10.44472 -10.34665 -10.23294 -10.11255 -10.02131 -9.93711 -9.70818 -9.67292 -9.48353 -9.45315 -8.59656 -8.54688 -6.78363 -5.76245 -3.10796 1.12579 1.71303 2.34239 2.62925 3.08085 3.36310 3.43225 3.44074 3.86198 4.04409 4.45149 4.47233 4.72951 4.87421 4.98042 5.10276 5.14367 5.15665 5.19002 5.20570 5.24132 5.33355 5.40448 5.42871 5.44997 5.54146 5.67912 5.70483 5.70758 5.75104 5.77056 5.80129 5.89590 5.93144 6.05057 6.15299 6.25118 6.33650 6.42211 6.52259 6.59283 6.65414 6.74959 6.96997 6.99613 7.13183 7.34652 7.54264 7.62057 7.79906 8.02131 8.06004 8.27584 9.19401 9.80522 10.49639 11.35599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003325 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.093322 B = 8417.880044 C = 9576.141974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.357 5.357 4 O 0.094 5.906 5 C 0.018 3.982 6 C -0.081 4.081 7 C -0.244 4.244 8 C 0.597 3.403 9 O -0.531 6.531 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.133 4.133 13 C -0.105 4.105 14 C -0.103 4.103 15 H 0.071 0.929 16 C 0.168 3.832 17 H 0.033 0.967 18 C -0.130 4.130 19 C -0.150 4.150 20 C 0.174 3.826 21 N -0.590 5.590 22 C -0.224 4.224 23 H 0.072 0.928 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.114 3.886 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.088 0.912 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 14.756 -4.810 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 N -0.064 5.064 4 O 0.033 5.967 5 C -0.045 4.045 6 C -0.138 4.138 7 C -0.251 4.251 8 C 0.383 3.617 9 O -0.407 6.407 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.143 4.143 14 C -0.125 4.125 15 H 0.089 0.911 16 C 0.059 3.941 17 H 0.051 0.949 18 C -0.168 4.168 19 C -0.188 4.188 20 C 0.049 3.951 21 N -0.314 5.314 22 C -0.352 4.352 23 H 0.090 0.910 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.007 4.007 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.273 15.640 -5.237 18.026 hybrid contribution 0.984 -0.764 -0.035 1.247 sum -6.288 14.876 -5.272 16.989 Atomic orbital electron populations 1.20215 0.85227 1.04247 1.03753 1.24726 0.98534 0.86543 1.01150 1.73606 0.89172 1.23368 1.20302 1.84523 1.21439 1.22651 1.68091 1.24648 0.97501 0.83574 0.98774 1.20508 0.88904 0.99470 1.04926 1.21906 0.92842 0.95434 1.14932 1.16921 0.77141 0.83850 0.83825 1.90815 1.51098 1.67847 1.30981 1.48106 1.67677 1.11390 1.05295 1.21768 0.99978 0.95594 0.83948 1.21944 0.98557 0.97407 0.99235 1.21493 1.01798 0.93272 0.97710 1.21968 0.98649 0.96719 0.95151 0.91063 1.20874 0.89395 0.89456 0.94333 0.94900 1.22691 0.96622 0.98745 0.98737 1.23007 1.00433 0.97000 0.98389 1.21405 0.85304 0.99554 0.88792 1.44469 1.04801 1.60375 1.21739 1.18933 0.82009 1.39355 0.94921 0.90981 1.24836 0.97720 1.02066 0.95340 1.69932 1.33627 1.51410 1.01395 0.86226 0.85478 0.77411 0.77319 1.21645 1.21764 1.20701 1.21907 0.98522 0.78062 1.02247 0.89661 0.89969 0.89751 0.88574 0.88991 0.88542 0.90848 0.91288 0.91740 0.91147 0.92663 0.89135 0.91510 0.92578 0.92505 0.92615 0.91324 0.95765 0.93785 0.89328 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.00 0.38 -0.31 16 2 C 0.05 0.63 7.59 -79.77 -0.61 0.02 16 3 N -0.36 -4.52 12.01 34.78 0.42 -4.10 16 4 O 0.09 1.12 11.06 18.65 0.21 1.33 16 5 C 0.02 0.21 7.43 -34.63 -0.26 -0.05 16 6 C -0.08 -0.70 10.33 36.01 0.37 -0.32 16 7 C -0.24 -3.12 4.23 -102.89 -0.44 -3.56 16 8 C 0.60 8.77 7.49 -12.53 -0.09 8.67 16 9 O -0.53 -9.60 16.52 5.27 0.09 -9.51 16 10 N -0.59 -7.98 2.97 -174.03 -0.52 -8.50 16 11 C 0.11 1.26 6.34 -3.71 -0.02 1.24 16 12 C -0.13 -1.73 6.08 -26.62 -0.16 -1.89 16 13 C -0.11 -1.69 4.74 -26.69 -0.13 -1.82 16 14 C -0.10 -1.73 2.10 -90.48 -0.19 -1.92 16 15 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 16 C 0.17 3.17 2.95 -66.95 -0.20 2.97 16 17 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 18 C -0.13 -2.09 5.11 -24.89 -0.13 -2.22 16 19 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 20 C 0.17 3.94 5.42 -2.53 -0.01 3.93 16 21 N -0.59 -13.72 2.29 -162.57 -0.37 -14.10 16 22 C -0.22 -5.81 9.84 -15.06 -0.15 -5.96 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 25 N -0.92 -25.52 10.56 55.49 0.59 -24.93 16 26 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.11 1.66 5.57 -3.69 -0.02 1.64 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.07 0.79 6.25 -51.93 -0.32 0.47 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.84 6.13 -51.93 -0.32 0.52 16 42 H 0.09 1.86 7.53 -51.93 -0.39 1.47 16 43 H 0.07 1.00 5.54 -51.93 -0.29 0.72 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.77 6.91 -51.93 -0.36 1.41 16 48 H 0.02 0.59 8.06 -51.93 -0.42 0.17 16 49 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 50 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 51 H 0.07 0.91 6.93 -51.93 -0.36 0.55 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -30.55 398.88 -8.80 -39.36 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.28 Total: 0.74 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.92 Total: -2.59 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.11 Total: -51.63 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.29 Total: -8.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.55 -8.80 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963261899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.684 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds