Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30015 * 127.33514 * 2 1 4 4 O 1.20665 * 112.29973 * 180.02562 * 3 2 1 5 5 C 1.33492 * 113.15605 * 359.71356 * 4 3 2 6 6 C 1.50701 * 126.82507 * 180.30919 * 5 4 3 7 7 C 1.37360 * 106.34130 * 0.45285 * 5 4 3 8 8 C 1.47398 * 128.56156 * 179.85331 * 7 5 4 9 9 O 1.21613 * 120.00307 * 269.67725 * 8 7 5 10 10 N 1.34771 * 120.00212 * 89.67886 * 8 7 5 11 11 C 1.46934 * 120.62964 * 359.97438 * 10 8 7 12 12 C 1.53188 * 108.77511 * 233.63214 * 11 10 8 13 13 C 1.53036 * 109.31361 * 305.36100 * 12 11 10 14 14 C 1.53043 * 109.53798 * 61.36535 * 13 12 11 15 15 H 1.09001 * 109.51900 * 58.60648 * 14 13 12 16 16 C 1.52995 * 109.49898 * 178.68042 * 14 13 12 17 17 H 1.08999 * 109.87330 * 180.86796 * 16 14 13 18 18 C 1.54329 * 110.00820 * 59.77528 * 16 14 13 19 19 C 1.55161 * 102.94019 * 218.31623 * 18 16 14 20 20 C 1.54906 * 101.58371 * 35.50258 * 19 18 16 21 21 N 1.47022 * 109.88619 * 301.89042 * 16 14 13 22 22 C 1.36938 * 125.64844 * 298.54437 * 21 16 14 23 23 H 1.08000 * 119.99479 * 345.69861 * 22 21 16 24 24 C 1.38813 * 120.00066 * 165.69274 * 22 21 16 25 25 N 1.31614 * 119.99769 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99786 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47025 * 90.00204 * 26 24 22 28 28 H 1.48497 * 109.46860 * 209.99946 * 26 24 22 29 29 H 1.48498 * 109.47051 * 330.00133 * 26 24 22 30 30 C 1.46925 * 120.63656 * 179.97438 * 10 8 7 31 31 H 1.09005 * 109.47389 * 269.95657 * 1 2 3 32 32 H 1.08998 * 109.47259 * 29.95926 * 1 2 3 33 33 H 1.09007 * 109.47313 * 149.96205 * 1 2 3 34 34 H 1.08997 * 109.47223 * 270.16806 * 6 5 4 35 35 H 1.09000 * 109.47192 * 30.17103 * 6 5 4 36 36 H 1.09006 * 109.46678 * 150.17319 * 6 5 4 37 37 H 1.09000 * 109.58325 * 353.41936 * 11 10 8 38 38 H 1.09003 * 109.58509 * 113.84230 * 11 10 8 39 39 H 1.08995 * 109.50349 * 65.31514 * 12 11 10 40 40 H 1.09004 * 109.49621 * 185.38337 * 12 11 10 41 41 H 1.09003 * 109.45983 * 301.34668 * 13 12 11 42 42 H 1.09004 * 109.46385 * 181.39086 * 13 12 11 43 43 H 1.08999 * 110.72045 * 336.67627 * 18 16 14 44 44 H 1.08997 * 110.71925 * 99.95461 * 18 16 14 45 45 H 1.08998 * 111.00241 * 277.42532 * 19 18 16 46 46 H 1.08999 * 111.00085 * 153.57766 * 19 18 16 47 47 H 1.09002 * 110.36543 * 204.15481 * 20 19 18 48 48 H 1.08997 * 110.46218 * 81.87176 * 20 19 18 49 49 H 0.97002 * 119.99717 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58154 * 6.58775 * 30 10 8 51 51 H 1.08989 * 109.70636 * 246.22798 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 0.0052 6 6 4.9712 -1.3246 0.0128 7 6 2.3991 -1.1696 -0.0005 8 6 2.0400 -2.5992 -0.0008 9 8 1.8915 -3.1887 -1.0541 10 7 1.8763 -3.2531 1.1662 11 6 2.0528 -2.5547 2.4468 12 6 3.0619 -3.3322 3.2975 13 6 2.5979 -4.7843 3.4323 14 6 2.5335 -5.4317 2.0471 15 1 3.5162 -5.3862 1.5778 16 6 2.1011 -6.8927 2.1859 17 1 2.0681 -7.3643 1.2037 18 6 0.7115 -6.9712 2.8527 19 6 0.8379 -8.2130 3.7743 20 6 2.3131 -8.1093 4.2354 21 7 3.0435 -7.6128 3.0549 22 6 4.3786 -7.7919 2.8089 23 1 4.7769 -7.5979 1.8239 24 6 5.2200 -8.2226 3.8255 25 7 4.7344 -8.4593 5.0256 26 14 7.0414 -8.4663 3.4900 27 1 7.7685 -7.2005 3.7625 28 1 7.5678 -9.5391 4.3715 29 1 7.2357 -8.8528 2.0694 30 6 1.5179 -4.6779 1.1822 31 1 -0.3634 -0.0008 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8897 -0.5144 34 1 5.2951 -1.5003 -1.0129 35 1 5.7147 -0.7179 0.5298 36 1 4.8597 -2.2791 0.5272 37 1 2.4274 -1.5474 2.2650 38 1 1.0976 -2.5027 2.9694 39 1 4.0398 -3.3060 2.8167 40 1 3.1304 -2.8784 4.2862 41 1 1.6092 -4.8084 3.8908 42 1 3.3014 -5.3338 4.0578 43 1 0.5141 -6.0740 3.4394 44 1 -0.0669 -7.1234 2.1050 45 1 0.6670 -9.1331 3.2156 46 1 0.1574 -8.1407 4.6227 47 1 2.6886 -9.0895 4.5291 48 1 2.4053 -7.4051 5.0622 49 1 5.3223 -8.7607 5.7359 50 1 1.5397 -5.0715 0.1660 51 1 0.5189 -4.8009 1.6004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963261899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = 27.297872 kcal Electronic energy + Delta-G solvation = -32519.377898 eV Core-core repulsion = 28421.714842 eV Total energy + Delta-G solvation = -4097.663055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.95360 -41.39598 -39.79481 -37.78127 -35.69978 -34.79814 -34.50547 -33.61364 -32.53047 -31.18062 -29.79829 -29.19654 -28.17057 -26.88505 -26.41364 -24.85733 -23.83175 -22.61934 -21.93490 -21.40757 -20.49910 -19.71279 -19.02278 -18.70514 -18.40195 -17.60133 -17.05447 -16.76744 -16.37942 -16.07741 -15.68653 -15.61196 -15.28677 -15.00659 -14.52015 -14.50783 -14.39721 -14.23555 -14.04346 -13.92437 -13.80180 -13.62129 -13.59223 -13.43843 -13.32215 -13.14774 -12.85046 -12.74603 -12.45462 -12.16448 -12.01250 -11.97120 -11.82182 -11.74320 -11.61564 -11.44975 -11.35137 -11.15471 -10.92736 -10.90329 -10.60407 -10.39885 -9.72155 -8.71399 -7.81325 -5.15392 0.22830 0.81774 1.23278 1.45152 1.46275 1.54193 1.67177 2.08499 2.51719 3.01380 3.20185 3.37314 3.48842 3.68778 3.79732 3.86244 3.94483 4.05503 4.12928 4.19246 4.29940 4.31491 4.36889 4.42583 4.44763 4.49479 4.54037 4.56068 4.58674 4.60490 4.73757 4.77649 4.81815 4.84259 4.86880 4.93383 5.00242 5.07648 5.11456 5.19849 5.25758 5.31490 5.42895 5.53651 5.54165 5.61312 5.70717 5.75176 5.86938 6.24314 6.31149 6.93450 7.13478 7.17814 7.86629 8.53640 9.29253 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003325 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.093322 B = 8417.880044 C = 9576.141974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.374 5.374 4 O 0.091 5.909 5 C 0.031 3.969 6 C -0.082 4.082 7 C -0.269 4.269 8 C 0.602 3.398 9 O -0.571 6.571 10 N -0.589 5.589 11 C 0.116 3.884 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.091 4.091 15 H 0.036 0.964 16 C 0.158 3.842 17 H 0.022 0.978 18 C -0.117 4.117 19 C -0.138 4.138 20 C 0.180 3.820 21 N -0.606 5.606 22 C -0.225 4.225 23 H 0.066 0.934 24 C -0.055 4.055 25 N -0.942 5.942 26 Si 0.961 3.039 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.276 1.276 30 C 0.125 3.875 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.027 0.973 48 H 0.001 0.999 49 H 0.245 0.755 50 H 0.074 0.926 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 16.772 -5.040 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.083 5.083 4 O 0.032 5.968 5 C -0.033 4.033 6 C -0.139 4.139 7 C -0.276 4.276 8 C 0.389 3.611 9 O -0.451 6.451 10 N -0.320 5.320 11 C -0.006 4.006 12 C -0.165 4.165 13 C -0.133 4.133 14 C -0.112 4.112 15 H 0.055 0.945 16 C 0.051 3.949 17 H 0.040 0.960 18 C -0.154 4.154 19 C -0.176 4.176 20 C 0.055 3.945 21 N -0.330 5.330 22 C -0.355 4.355 23 H 0.084 0.916 24 C -0.248 4.248 25 N -0.591 5.591 26 Si 0.791 3.209 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.201 1.201 30 C 0.003 3.997 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.045 0.955 48 H 0.019 0.981 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.930 17.683 -5.472 20.552 hybrid contribution 1.523 -1.410 0.002 2.076 sum -7.407 16.272 -5.470 18.697 Atomic orbital electron populations 1.20362 0.83298 1.04673 1.05177 1.25165 0.99740 0.85813 0.99901 1.73603 0.89436 1.23778 1.21454 1.84516 1.21361 1.22713 1.68183 1.25034 0.97979 0.83404 0.96836 1.20644 0.88430 0.99073 1.05766 1.21794 0.93895 0.94644 1.17296 1.17087 0.76209 0.84430 0.83340 1.90792 1.52968 1.68923 1.32419 1.48126 1.66992 1.10924 1.05940 1.21871 1.00710 0.95438 0.82591 1.21879 0.98413 0.95606 1.00617 1.21332 1.01334 0.94566 0.96091 1.21716 0.97614 0.95913 0.95960 0.94493 1.21083 0.90413 0.90091 0.93296 0.96019 1.22677 0.95237 0.98513 0.98973 1.22884 0.96987 0.98072 0.99659 1.21179 0.88500 0.96527 0.88292 1.44649 1.04563 1.61371 1.22418 1.19127 0.83697 1.38097 0.94561 0.91598 1.25471 1.01107 1.02872 0.95384 1.70121 1.34267 1.52802 1.01931 0.85337 0.81469 0.77010 0.77121 1.21330 1.22304 1.20091 1.21708 0.98674 0.78440 1.00893 0.87634 0.88809 0.90024 0.87593 0.86403 0.89634 0.89594 0.88700 0.92986 0.89284 0.91013 0.94131 0.89766 0.89369 0.92375 0.89928 0.95473 0.98135 0.94585 0.90799 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.49 71.23 0.75 -0.43 16 2 C 0.06 1.22 7.59 45.15 0.34 1.57 16 3 N -0.37 -8.74 12.01 -44.78 -0.54 -9.28 16 4 O 0.09 2.01 11.06 76.98 0.85 2.86 16 5 C 0.03 0.65 7.43 25.48 0.19 0.84 16 6 C -0.08 -1.29 10.33 71.24 0.74 -0.55 16 7 C -0.27 -6.45 4.23 -18.74 -0.08 -6.53 16 8 C 0.60 16.93 7.49 86.66 0.65 17.58 16 9 O -0.57 -20.47 16.52 -4.07 -0.07 -20.54 16 10 N -0.59 -14.71 2.97 -822.75 -2.44 -17.15 16 11 C 0.12 2.30 6.34 86.36 0.55 2.85 16 12 C -0.13 -3.08 6.08 30.67 0.19 -2.89 16 13 C -0.10 -3.00 4.74 30.62 0.15 -2.85 16 14 C -0.09 -3.01 2.10 -10.71 -0.02 -3.03 16 15 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 16 C 0.16 5.92 2.95 45.34 0.13 6.06 16 17 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 18 C -0.12 -3.41 5.11 31.79 0.16 -3.25 16 19 C -0.14 -4.67 7.08 31.99 0.23 -4.44 16 20 C 0.18 8.36 5.42 86.85 0.47 8.83 16 21 N -0.61 -29.00 2.29 -668.26 -1.53 -30.53 16 22 C -0.23 -12.15 9.84 84.03 0.83 -11.32 16 23 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 24 C -0.05 -3.02 5.47 84.86 0.46 -2.55 16 25 N -0.94 -54.75 10.56 21.65 0.23 -54.52 16 26 Si 0.96 45.12 29.55 68.60 2.03 47.15 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 30 C 0.13 3.41 5.57 86.37 0.48 3.89 16 31 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.57 8.11 -2.38 -0.02 1.55 16 37 H 0.09 1.57 6.25 -2.39 -0.01 1.56 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.07 1.99 6.13 -2.39 -0.01 1.98 16 42 H 0.04 1.70 7.53 -2.38 -0.02 1.68 16 43 H 0.08 2.20 5.54 -2.39 -0.01 2.19 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 48 H 0.00 0.03 8.06 -2.39 -0.02 0.01 16 49 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 51 H 0.10 2.14 6.93 -2.39 -0.02 2.13 16 Total: -1.00 -70.35 398.88 5.66 -64.69 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.93 Total: 13.59 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.21 Total: 3.74 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.28 Total: -111.48 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.78 Total: -17.68 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.35 5.66 -64.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963261899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.983 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds