Wall clock time and date at job start Wed Apr 1 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29943 * 125.37653 * 2 1 4 4 C 1.36071 * 108.47362 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.44672 * 180.02562 * 4 3 2 6 6 O 1.21604 * 119.99988 * 174.47471 * 5 4 3 7 7 N 1.34781 * 119.99738 * 354.46947 * 5 4 3 8 8 C 1.46924 * 120.63482 * 4.16774 * 7 5 4 9 9 C 1.53187 * 108.77738 * 233.58793 * 8 7 5 10 10 C 1.53045 * 109.31326 * 305.36186 * 9 8 7 11 11 C 1.53045 * 109.53406 * 61.36567 * 10 9 8 12 12 H 1.08998 * 109.49656 * 58.58733 * 11 10 9 13 13 C 1.52996 * 109.49459 * 178.65537 * 11 10 9 14 14 H 1.09007 * 109.87339 * 305.63801 * 13 11 10 15 15 C 1.54323 * 109.88317 * 184.47034 * 13 11 10 16 16 C 1.55158 * 102.94339 * 218.38686 * 15 13 11 17 17 C 1.54910 * 101.57990 * 35.49913 * 16 15 13 18 18 N 1.47016 * 109.88576 * 66.65525 * 13 11 10 19 19 C 1.36938 * 125.65066 * 298.32553 * 18 13 11 20 20 H 1.08004 * 119.99975 * 138.92170 * 19 18 13 21 21 C 1.38809 * 119.99907 * 318.91613 * 19 18 13 22 22 N 1.31623 * 120.00066 * 169.34160 * 21 19 18 23 23 Si 1.86798 * 119.99946 * 349.34622 * 21 19 18 24 24 H 1.48504 * 109.46910 * 87.92241 * 23 21 19 25 25 H 1.48500 * 109.47000 * 207.91728 * 23 21 19 26 26 H 1.48492 * 109.47282 * 327.91855 * 23 21 19 27 27 C 1.46929 * 120.62764 * 183.88992 * 7 5 4 28 28 C 1.36090 * 107.10198 * 0.02562 * 4 3 2 29 29 C 1.50708 * 126.52042 * 180.26249 * 28 4 3 30 30 O 1.34049 * 125.38292 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47107 * 299.99733 * 1 2 3 33 33 H 1.08994 * 109.47165 * 59.99742 * 1 2 3 34 34 H 1.09001 * 109.58276 * 353.37575 * 8 7 5 35 35 H 1.08997 * 109.58722 * 113.79737 * 8 7 5 36 36 H 1.08997 * 109.50114 * 65.31397 * 9 8 7 37 37 H 1.08997 * 109.49698 * 185.41532 * 9 8 7 38 38 H 1.08996 * 109.46230 * 181.38679 * 10 9 8 39 39 H 1.09004 * 109.45631 * 301.36282 * 10 9 8 40 40 H 1.08999 * 110.71601 * 336.74515 * 15 13 11 41 41 H 1.08995 * 110.72468 * 100.02162 * 15 13 11 42 42 H 1.08997 * 111.00752 * 277.42573 * 16 15 13 43 43 H 1.08996 * 111.00621 * 153.56929 * 16 15 13 44 44 H 1.09007 * 110.36619 * 204.15307 * 17 16 15 45 45 H 1.08994 * 110.46370 * 81.87829 * 17 16 15 46 46 H 0.96998 * 120.00089 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58349 * 246.20404 * 27 7 5 48 48 H 1.09003 * 109.58676 * 6.62442 * 27 7 5 49 49 H 1.08998 * 109.46744 * 179.70829 * 29 28 4 50 50 H 1.08998 * 109.46945 * 299.70810 * 29 28 4 51 51 H 1.08998 * 109.46745 * 59.71042 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8574 1.0658 0.1032 7 7 4.5911 2.8783 -0.1110 8 6 3.2503 3.4782 -0.1434 9 6 3.1355 4.3621 -1.3892 10 6 4.2793 5.3790 -1.3955 11 6 5.6193 4.6416 -1.4482 12 1 5.6564 4.0178 -2.3413 13 6 6.7609 5.6593 -1.4882 14 1 6.6090 6.3543 -2.3142 15 6 8.1100 4.9286 -1.6545 16 6 9.0635 5.7481 -0.7452 17 6 8.1214 6.1395 0.4205 18 7 6.8178 6.3973 -0.2180 19 6 5.8247 7.1929 0.2880 20 1 5.5940 7.1636 1.3427 21 6 5.1147 8.0371 -0.5547 22 7 4.0302 8.6423 -0.1187 23 14 5.6981 8.3140 -2.3074 24 1 5.1153 7.2742 -3.1932 25 1 5.2627 9.6570 -2.7677 26 1 7.1800 8.2308 -2.3548 27 6 5.7623 3.7612 -0.1974 28 6 3.5659 -0.6970 0.0003 29 6 4.7802 -1.5897 0.0063 30 8 2.2831 -1.0929 0.0005 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.4983 2.6901 -0.1839 35 1 3.0995 4.0843 0.7499 36 1 3.1960 3.7410 -2.2829 37 1 2.1810 4.8883 -1.3752 38 1 4.1858 6.0253 -2.2682 39 1 4.2329 5.9832 -0.4894 40 1 8.0359 3.8984 -1.3063 41 1 8.4421 4.9632 -2.6920 42 1 9.4326 6.6332 -1.2633 43 1 9.8896 5.1323 -0.3899 44 1 8.4854 7.0393 0.9166 45 1 8.0385 5.3206 1.1349 46 1 3.5343 9.2325 -0.7074 47 1 5.8122 4.3899 0.6916 48 1 6.6683 3.1600 -0.2736 49 1 4.4641 -2.6328 0.0098 50 1 5.3790 -1.3944 -0.8832 51 1 5.3753 -1.3874 0.8968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963375003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:00 Heat of formation + Delta-G solvation = 29.025018 kcal Electronic energy + Delta-G solvation = -33026.342055 eV Core-core repulsion = 28928.753895 eV Total energy + Delta-G solvation = -4097.588161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60545 -39.84695 -38.35002 -36.27262 -35.10148 -33.22641 -32.90649 -32.17291 -30.77172 -30.30246 -29.92048 -27.41888 -26.44883 -24.79141 -24.38599 -22.94130 -22.63995 -21.62416 -20.37821 -20.09398 -19.49579 -18.76763 -17.24256 -17.19369 -16.57453 -16.08546 -15.87189 -15.35248 -14.80593 -14.67428 -14.31350 -14.08097 -13.83127 -13.70358 -13.49034 -13.34681 -13.19482 -13.06287 -12.96402 -12.93374 -12.77388 -12.44106 -12.37114 -11.94174 -11.82629 -11.66312 -11.45786 -11.34997 -11.07628 -10.79540 -10.62633 -10.47973 -10.29753 -10.23606 -10.04881 -9.93639 -9.80870 -9.54085 -9.21001 -9.06176 -8.89751 -8.36350 -8.00550 -6.67815 -5.99936 -3.46387 1.01929 1.91180 2.30775 3.27035 3.31591 3.44144 3.46013 3.50711 3.76165 4.47190 4.50774 4.66365 4.82049 5.04379 5.07942 5.15361 5.18162 5.22442 5.33298 5.34639 5.42468 5.47522 5.62157 5.64251 5.70216 5.71180 5.78138 5.80660 5.83868 5.85549 6.00752 6.10651 6.22064 6.29382 6.33016 6.41869 6.46933 6.51157 6.63258 6.68822 6.74430 6.78405 6.86718 6.89035 6.94995 7.09467 7.16946 7.38394 7.69952 7.84685 8.04271 8.35226 8.41438 8.87874 9.65552 10.30103 11.14571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003757 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.538094 B = 7451.710884 C = 8698.134550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.451 5.451 4 C -0.061 4.061 5 C 0.592 3.408 6 O -0.549 6.549 7 N -0.581 5.581 8 C 0.065 3.935 9 C -0.125 4.125 10 C -0.143 4.143 11 C -0.094 4.094 12 H 0.048 0.952 13 C 0.150 3.850 14 H 0.036 0.964 15 C -0.132 4.132 16 C -0.135 4.135 17 C 0.129 3.871 18 N -0.602 5.602 19 C -0.245 4.245 20 H 0.081 0.919 21 C 0.048 3.952 22 N -0.904 5.904 23 Si 0.885 3.115 24 H -0.276 1.276 25 H -0.307 1.307 26 H -0.273 1.273 27 C 0.127 3.873 28 C 0.031 3.969 29 C -0.064 4.064 30 O -0.198 6.198 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.026 0.974 46 H 0.264 0.736 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.097 0.903 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 -18.642 -1.484 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.181 5.181 4 C -0.181 4.181 5 C 0.379 3.621 6 O -0.429 6.429 7 N -0.310 5.310 8 C -0.058 4.058 9 C -0.163 4.163 10 C -0.179 4.179 11 C -0.115 4.115 12 H 0.067 0.933 13 C 0.044 3.956 14 H 0.053 0.947 15 C -0.170 4.170 16 C -0.174 4.174 17 C 0.004 3.996 18 N -0.329 5.329 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.154 4.154 22 N -0.545 5.545 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.235 1.235 26 H -0.199 1.199 27 C 0.006 3.994 28 C -0.025 4.025 29 C -0.120 4.120 30 O -0.085 6.085 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.116 0.884 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.908 -18.087 -1.405 18.558 hybrid contribution 0.303 -0.146 -1.267 1.311 sum -3.605 -18.233 -2.672 18.777 Atomic orbital electron populations 1.20318 0.80908 1.04791 1.05480 1.26469 0.96561 0.78560 1.00253 1.70396 1.01132 1.28041 1.18553 1.21638 0.92028 0.92263 1.12127 1.16775 0.85950 0.81821 0.77562 1.90749 1.24482 1.75095 1.52587 1.48025 1.09272 1.04818 1.68918 1.22965 0.84410 0.99990 0.98392 1.21843 0.99907 0.97688 0.96883 1.22263 0.91637 0.97486 1.06549 1.21796 0.97424 0.96320 0.95982 0.93325 1.21245 0.92002 0.91428 0.90927 0.94658 1.22661 0.95800 0.99325 0.99192 1.22749 0.97278 0.99280 0.98072 1.21756 0.86029 0.98051 0.93803 1.44667 1.13408 1.53392 1.21413 1.18390 1.09490 1.14394 0.95064 0.90129 1.25458 0.96774 0.95097 0.98030 1.69763 1.16570 1.31773 1.36430 0.87027 0.79390 0.75705 0.86122 1.20328 1.23540 1.19870 1.21844 0.86533 0.91124 0.99900 1.23642 0.83744 0.94477 1.00640 1.20418 0.89461 0.96557 1.05604 1.84308 1.16425 1.37862 1.69951 0.89357 0.88154 0.88213 0.83953 0.91785 0.93688 0.91564 0.92906 0.85370 0.91088 0.92200 0.91903 0.91938 0.93432 0.95650 0.92594 0.89388 0.90258 0.90547 0.88445 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.19 2.10 8.30 -13.08 -0.11 1.99 16 3 N -0.45 -6.42 7.67 -7.65 -0.06 -6.48 16 4 C -0.06 -0.95 6.75 -83.02 -0.56 -1.51 16 5 C 0.59 10.73 7.69 -12.52 -0.10 10.63 16 6 O -0.55 -10.56 15.05 5.27 0.08 -10.48 16 7 N -0.58 -10.91 2.97 -173.78 -0.52 -11.42 16 8 C 0.06 1.16 6.32 -3.71 -0.02 1.14 16 9 C -0.12 -2.32 6.08 -26.61 -0.16 -2.48 16 10 C -0.14 -3.10 3.61 -26.68 -0.10 -3.20 16 11 C -0.09 -1.93 2.14 -90.28 -0.19 -2.12 16 12 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 13 C 0.15 3.20 2.12 -66.96 -0.14 3.06 16 14 H 0.04 0.84 3.42 -51.93 -0.18 0.66 16 15 C -0.13 -2.35 6.31 -24.90 -0.16 -2.50 16 16 C -0.14 -2.32 7.09 -24.58 -0.17 -2.49 16 17 C 0.13 2.56 7.23 -2.52 -0.02 2.54 16 18 N -0.60 -13.89 1.55 -162.57 -0.25 -14.15 16 19 C -0.25 -6.51 8.26 -15.06 -0.12 -6.63 16 20 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 21 C 0.05 1.30 3.64 -17.43 -0.06 1.24 16 22 N -0.90 -26.14 13.97 55.49 0.78 -25.36 16 23 Si 0.89 22.29 23.01 -169.99 -3.91 18.38 16 24 H -0.28 -6.72 5.58 56.52 0.32 -6.41 16 25 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 26 H -0.27 -6.88 6.97 56.52 0.39 -6.49 16 27 C 0.13 2.52 5.29 -3.49 -0.02 2.50 16 28 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 29 C -0.06 -0.63 9.15 36.01 0.33 -0.30 16 30 O -0.20 -2.30 10.73 6.54 0.07 -2.23 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.14 2.36 3.62 -80.56 -0.29 2.07 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.23 5.24 -51.93 -0.27 0.96 16 39 H 0.13 3.21 4.55 -51.93 -0.24 2.97 16 40 H 0.07 1.21 6.14 -51.93 -0.32 0.89 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 47 H 0.09 1.93 7.18 -51.93 -0.37 1.56 16 48 H 0.08 1.56 5.43 -51.93 -0.28 1.28 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.10 1.02 8.00 -51.93 -0.42 0.61 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -31.43 376.45 -7.57 -39.00 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.94 Total: 5.06 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.49 Total: 2.02 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.05 Total: -57.41 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.15 Total: -12.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -3.91 Total: 18.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.43 -7.57 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963375003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.023 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds