Wall clock time and date at job start Wed Apr 1 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29943 * 125.37653 * 2 1 4 4 C 1.36071 * 108.47362 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.44672 * 180.02562 * 4 3 2 6 6 O 1.21604 * 119.99988 * 174.47471 * 5 4 3 7 7 N 1.34781 * 119.99738 * 354.46947 * 5 4 3 8 8 C 1.46924 * 120.63482 * 4.16774 * 7 5 4 9 9 C 1.53187 * 108.77738 * 233.58793 * 8 7 5 10 10 C 1.53045 * 109.31326 * 305.36186 * 9 8 7 11 11 C 1.53045 * 109.53406 * 61.36567 * 10 9 8 12 12 H 1.08998 * 109.49656 * 58.58733 * 11 10 9 13 13 C 1.52996 * 109.49459 * 178.65537 * 11 10 9 14 14 H 1.09007 * 109.87339 * 305.63801 * 13 11 10 15 15 C 1.54323 * 109.88317 * 184.47034 * 13 11 10 16 16 C 1.55158 * 102.94339 * 218.38686 * 15 13 11 17 17 C 1.54910 * 101.57990 * 35.49913 * 16 15 13 18 18 N 1.47016 * 109.88576 * 66.65525 * 13 11 10 19 19 C 1.36938 * 125.65066 * 298.32553 * 18 13 11 20 20 H 1.08004 * 119.99975 * 138.92170 * 19 18 13 21 21 C 1.38809 * 119.99907 * 318.91613 * 19 18 13 22 22 N 1.31623 * 120.00066 * 169.34160 * 21 19 18 23 23 Si 1.86798 * 119.99946 * 349.34622 * 21 19 18 24 24 H 1.48504 * 109.46910 * 87.92241 * 23 21 19 25 25 H 1.48500 * 109.47000 * 207.91728 * 23 21 19 26 26 H 1.48492 * 109.47282 * 327.91855 * 23 21 19 27 27 C 1.46929 * 120.62764 * 183.88992 * 7 5 4 28 28 C 1.36090 * 107.10198 * 0.02562 * 4 3 2 29 29 C 1.50708 * 126.52042 * 180.26249 * 28 4 3 30 30 O 1.34049 * 125.38292 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47107 * 299.99733 * 1 2 3 33 33 H 1.08994 * 109.47165 * 59.99742 * 1 2 3 34 34 H 1.09001 * 109.58276 * 353.37575 * 8 7 5 35 35 H 1.08997 * 109.58722 * 113.79737 * 8 7 5 36 36 H 1.08997 * 109.50114 * 65.31397 * 9 8 7 37 37 H 1.08997 * 109.49698 * 185.41532 * 9 8 7 38 38 H 1.08996 * 109.46230 * 181.38679 * 10 9 8 39 39 H 1.09004 * 109.45631 * 301.36282 * 10 9 8 40 40 H 1.08999 * 110.71601 * 336.74515 * 15 13 11 41 41 H 1.08995 * 110.72468 * 100.02162 * 15 13 11 42 42 H 1.08997 * 111.00752 * 277.42573 * 16 15 13 43 43 H 1.08996 * 111.00621 * 153.56929 * 16 15 13 44 44 H 1.09007 * 110.36619 * 204.15307 * 17 16 15 45 45 H 1.08994 * 110.46370 * 81.87829 * 17 16 15 46 46 H 0.96998 * 120.00089 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58349 * 246.20404 * 27 7 5 48 48 H 1.09003 * 109.58676 * 6.62442 * 27 7 5 49 49 H 1.08998 * 109.46744 * 179.70829 * 29 28 4 50 50 H 1.08998 * 109.46945 * 299.70810 * 29 28 4 51 51 H 1.08998 * 109.46745 * 59.71042 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8574 1.0658 0.1032 7 7 4.5911 2.8783 -0.1110 8 6 3.2503 3.4782 -0.1434 9 6 3.1355 4.3621 -1.3892 10 6 4.2793 5.3790 -1.3955 11 6 5.6193 4.6416 -1.4482 12 1 5.6564 4.0178 -2.3413 13 6 6.7609 5.6593 -1.4882 14 1 6.6090 6.3543 -2.3142 15 6 8.1100 4.9286 -1.6545 16 6 9.0635 5.7481 -0.7452 17 6 8.1214 6.1395 0.4205 18 7 6.8178 6.3973 -0.2180 19 6 5.8247 7.1929 0.2880 20 1 5.5940 7.1636 1.3427 21 6 5.1147 8.0371 -0.5547 22 7 4.0302 8.6423 -0.1187 23 14 5.6981 8.3140 -2.3074 24 1 5.1153 7.2742 -3.1932 25 1 5.2627 9.6570 -2.7677 26 1 7.1800 8.2308 -2.3548 27 6 5.7623 3.7612 -0.1974 28 6 3.5659 -0.6970 0.0003 29 6 4.7802 -1.5897 0.0063 30 8 2.2831 -1.0929 0.0005 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.4983 2.6901 -0.1839 35 1 3.0995 4.0843 0.7499 36 1 3.1960 3.7410 -2.2829 37 1 2.1810 4.8883 -1.3752 38 1 4.1858 6.0253 -2.2682 39 1 4.2329 5.9832 -0.4894 40 1 8.0359 3.8984 -1.3063 41 1 8.4421 4.9632 -2.6920 42 1 9.4326 6.6332 -1.2633 43 1 9.8896 5.1323 -0.3899 44 1 8.4854 7.0393 0.9166 45 1 8.0385 5.3206 1.1349 46 1 3.5343 9.2325 -0.7074 47 1 5.8122 4.3899 0.6916 48 1 6.6683 3.1600 -0.2736 49 1 4.4641 -2.6328 0.0098 50 1 5.3790 -1.3944 -0.8832 51 1 5.3753 -1.3874 0.8968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963375003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:59 Heat of formation + Delta-G solvation = 8.708966 kcal Electronic energy + Delta-G solvation = -33027.223026 eV Core-core repulsion = 28928.753895 eV Total energy + Delta-G solvation = -4098.469131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.56876 -41.36367 -39.91243 -37.79037 -36.13559 -34.80817 -34.09820 -33.82272 -32.33685 -31.75941 -30.97426 -28.89590 -27.69068 -26.37009 -25.96276 -24.23539 -24.01130 -22.74203 -21.94497 -21.64681 -21.04418 -20.21360 -18.69660 -18.36096 -18.13862 -17.65445 -17.26705 -16.78222 -16.31156 -16.12647 -15.49914 -15.35489 -15.25010 -15.14444 -14.99835 -14.70403 -14.46111 -14.36046 -14.31595 -14.00984 -13.61705 -13.55528 -13.54683 -13.49278 -13.32155 -13.16600 -12.93701 -12.85267 -12.46140 -12.41119 -12.23887 -12.11832 -11.97540 -11.92817 -11.78362 -11.57977 -11.36523 -11.24987 -10.87358 -10.47998 -10.36875 -9.93421 -9.54522 -8.60452 -8.14969 -5.57279 -0.00531 0.89233 1.28757 1.37487 1.42509 1.46494 1.93451 2.14906 2.41820 2.82270 3.13412 3.38495 3.47590 3.58417 3.78414 3.90517 4.07599 4.10849 4.11945 4.17225 4.20557 4.24209 4.30847 4.43461 4.45084 4.57545 4.59963 4.63681 4.68054 4.68816 4.72841 4.81352 4.85080 4.86276 5.00507 5.00698 5.05297 5.08288 5.12018 5.14028 5.15821 5.23206 5.24201 5.33542 5.42900 5.48483 5.73449 5.82086 6.03177 6.21986 6.30324 6.50420 6.90078 7.00737 7.58135 8.28459 9.03699 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003757 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.538094 B = 7451.710884 C = 8698.134550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.205 3.795 3 N -0.485 5.485 4 C -0.100 4.100 5 C 0.591 3.409 6 O -0.565 6.565 7 N -0.590 5.590 8 C 0.072 3.928 9 C -0.118 4.118 10 C -0.138 4.138 11 C -0.089 4.089 12 H 0.060 0.940 13 C 0.141 3.859 14 H 0.018 0.982 15 C -0.125 4.125 16 C -0.122 4.122 17 C 0.121 3.879 18 N -0.615 5.615 19 C -0.227 4.227 20 H 0.042 0.958 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.933 3.067 24 H -0.266 1.266 25 H -0.317 1.317 26 H -0.269 1.269 27 C 0.142 3.858 28 C 0.046 3.954 29 C -0.064 4.064 30 O -0.192 6.192 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.165 0.835 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.262 0.738 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -21.924 -2.842 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.003 4.003 3 N -0.215 5.215 4 C -0.218 4.218 5 C 0.380 3.620 6 O -0.446 6.446 7 N -0.320 5.320 8 C -0.050 4.050 9 C -0.156 4.156 10 C -0.175 4.175 11 C -0.110 4.110 12 H 0.079 0.921 13 C 0.036 3.964 14 H 0.036 0.964 15 C -0.162 4.162 16 C -0.161 4.161 17 C -0.003 4.003 18 N -0.341 5.341 19 C -0.357 4.357 20 H 0.059 0.941 21 C -0.185 4.185 22 N -0.588 5.588 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.247 1.247 26 H -0.195 1.195 27 C 0.020 3.980 28 C -0.010 4.010 29 C -0.120 4.120 30 O -0.080 6.080 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.181 0.819 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.127 0.873 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.651 -21.394 -2.763 21.878 hybrid contribution 0.164 0.746 -0.722 1.052 sum -3.487 -20.647 -3.486 21.228 Atomic orbital electron populations 1.20670 0.77259 1.06996 1.06608 1.27438 0.98019 0.77589 0.97235 1.70119 1.00956 1.29681 1.20727 1.21353 0.91849 0.92980 1.15581 1.17099 0.86782 0.81573 0.76563 1.90717 1.25415 1.75287 1.53181 1.48054 1.08934 1.05295 1.69717 1.22986 0.84889 1.00185 0.96963 1.21779 0.98920 0.97140 0.97767 1.22069 0.93939 0.97795 1.03674 1.21738 0.96411 0.96212 0.96675 0.92123 1.21380 0.94599 0.91383 0.89082 0.96445 1.22661 0.93447 0.99298 1.00840 1.22701 0.97343 0.99746 0.96260 1.21895 0.85292 0.97983 0.95116 1.44732 1.13976 1.53241 1.22148 1.18097 1.09921 1.14219 0.93428 0.94076 1.25782 0.96763 0.95325 1.00663 1.69871 1.18030 1.33349 1.37595 0.86256 0.78999 0.75090 0.83179 1.19229 1.24652 1.19497 1.21512 0.87456 0.90833 0.98202 1.24067 0.84882 0.93902 0.98191 1.20551 0.88260 0.97919 1.05290 1.84367 1.15938 1.37854 1.69818 0.86638 0.86955 0.86889 0.81915 0.93988 0.92443 0.90978 0.94712 0.88996 0.90089 0.89903 0.91919 0.88345 0.94108 0.95183 0.92892 0.92384 0.89795 0.87304 0.88476 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.23 0.75 0.25 16 2 C 0.21 4.03 8.30 88.39 0.73 4.76 16 3 N -0.48 -13.13 7.67 -293.03 -2.25 -15.38 16 4 C -0.10 -3.00 6.75 40.41 0.27 -2.72 16 5 C 0.59 21.18 7.69 86.66 0.67 21.85 16 6 O -0.57 -21.34 15.05 -4.04 -0.06 -21.40 16 7 N -0.59 -22.33 2.97 -821.96 -2.44 -24.77 16 8 C 0.07 2.62 6.32 86.36 0.55 3.16 16 9 C -0.12 -4.41 6.08 30.67 0.19 -4.22 16 10 C -0.14 -6.12 3.61 30.62 0.11 -6.01 16 11 C -0.09 -3.65 2.14 -10.57 -0.02 -3.67 16 12 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 13 C 0.14 5.93 2.12 45.34 0.10 6.03 16 14 H 0.02 0.83 3.42 -2.38 -0.01 0.82 16 15 C -0.12 -4.10 6.31 31.78 0.20 -3.90 16 16 C -0.12 -3.85 7.09 31.99 0.23 -3.62 16 17 C 0.12 4.77 7.23 86.85 0.63 5.40 16 18 N -0.61 -28.75 1.55 -668.25 -1.04 -29.79 16 19 C -0.23 -12.62 8.26 84.03 0.69 -11.93 16 20 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 21 C 0.01 0.69 3.64 84.86 0.31 1.00 16 22 N -0.94 -57.17 13.97 21.65 0.30 -56.87 16 23 Si 0.93 46.97 23.01 68.60 1.58 48.55 16 24 H -0.27 -12.78 5.58 99.48 0.56 -12.23 16 25 H -0.32 -16.35 7.11 99.48 0.71 -15.64 16 26 H -0.27 -13.26 6.97 99.48 0.69 -12.57 16 27 C 0.14 5.68 5.29 86.51 0.46 6.13 16 28 C 0.05 1.10 7.44 25.19 0.19 1.29 16 29 C -0.06 -1.11 9.15 71.24 0.65 -0.46 16 30 O -0.19 -3.91 10.73 0.49 0.01 -3.90 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.17 5.36 3.62 -58.92 -0.21 5.15 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.03 1.64 5.24 -2.39 -0.01 1.62 16 39 H 0.09 4.83 4.55 -2.38 -0.01 4.82 16 40 H 0.08 2.52 6.14 -2.39 -0.01 2.50 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 44 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.06 2.65 7.18 -2.39 -0.02 2.64 16 48 H 0.08 3.26 5.43 -2.39 -0.01 3.24 16 49 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.10 1.80 8.00 -2.39 -0.02 1.78 16 Total: -1.00 -71.67 376.45 3.37 -68.30 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.58 Total: 21.93 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.69 Total: 13.34 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -5.42 Total: -126.81 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.58 Total: 48.55 kcal Total: -71.67 3.37 -68.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963375003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds