Wall clock time and date at job start Wed Apr 1 2020 04:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30016 * 127.32989 * 2 1 4 4 O 1.20665 * 112.29902 * 179.97438 * 3 2 1 5 5 C 1.33485 * 113.15498 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.82980 * 179.97438 * 5 4 3 7 7 C 1.53007 * 117.49767 * 8.62064 * 6 5 4 8 8 C 1.53002 * 60.00185 * 252.51290 * 7 6 5 9 9 C 1.37355 * 106.34724 * 359.97438 * 5 4 3 10 10 C 1.47395 * 128.56980 * 180.25985 * 9 5 4 11 11 O 1.21608 * 120.00153 * 269.70341 * 10 9 5 12 12 N 1.34784 * 119.99985 * 89.69864 * 10 9 5 13 13 C 1.46491 * 120.00020 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99914 * 179.97438 * 12 10 9 15 15 C 1.52999 * 109.47443 * 300.80558 * 14 12 10 16 16 C 1.53001 * 109.47090 * 300.00007 * 15 14 12 17 17 C 1.52999 * 109.47020 * 299.99690 * 16 15 14 18 18 N 1.46498 * 109.47005 * 179.97438 * 17 16 15 19 19 C 1.36941 * 119.99956 * 85.00195 * 18 17 16 20 20 H 1.07996 * 119.99731 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00035 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46978 * 89.99794 * 23 21 19 25 25 H 1.48496 * 109.46966 * 209.99604 * 23 21 19 26 26 H 1.48492 * 109.47202 * 330.00174 * 23 21 19 27 27 C 1.52999 * 109.46936 * 60.00216 * 17 16 15 28 28 C 1.52999 * 109.47260 * 180.80505 * 14 12 10 29 29 H 1.08997 * 109.46901 * 270.04079 * 1 2 3 30 30 H 1.08996 * 109.47219 * 30.04131 * 1 2 3 31 31 H 1.09002 * 109.46711 * 150.04230 * 1 2 3 32 32 H 1.08997 * 115.55210 * 154.32856 * 6 5 4 33 33 H 1.09005 * 117.49400 * 0.02562 * 7 6 5 34 34 H 1.08995 * 117.49902 * 145.01772 * 7 6 5 35 35 H 1.09000 * 117.49848 * 252.51461 * 8 7 6 36 36 H 1.08999 * 117.52242 * 107.47617 * 8 7 6 37 37 H 1.09000 * 109.47259 * 84.08317 * 13 12 10 38 38 H 1.08993 * 109.47339 * 204.08398 * 13 12 10 39 39 H 1.09005 * 109.47450 * 324.08565 * 13 12 10 40 40 H 1.09007 * 109.47190 * 60.80276 * 14 12 10 41 41 H 1.09001 * 109.46950 * 60.00265 * 15 14 12 42 42 H 1.09003 * 109.47158 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.46557 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47099 * 60.00379 * 16 15 14 45 45 H 1.09003 * 109.47427 * 300.00098 * 17 16 15 46 46 H 0.96995 * 120.00211 * 265.00165 * 18 17 16 47 47 H 0.96994 * 120.00363 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.47296 * 179.97438 * 27 17 16 49 49 H 1.09003 * 109.47158 * 59.99718 * 27 17 16 50 50 H 1.09003 * 109.47427 * 180.02562 * 28 14 12 51 51 H 1.09006 * 109.47113 * 300.00253 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 6 6.2354 -0.4868 0.2039 8 6 5.9169 -1.0683 -1.1750 9 6 2.3993 -1.1695 0.0003 10 6 2.0402 -2.5991 0.0054 11 8 1.8888 -3.1917 -1.0457 12 7 1.8798 -3.2495 1.1749 13 6 2.0617 -2.5355 2.4411 14 6 1.5224 -4.6702 1.1800 15 6 0.1939 -4.8645 0.4463 16 6 -0.9005 -4.0608 1.1515 17 6 -1.0396 -4.5466 2.5956 18 7 -2.0871 -3.7767 3.2710 19 6 -3.3979 -4.1560 3.1557 20 1 -3.6593 -5.0230 2.5672 21 6 -4.3904 -3.4262 3.7952 22 7 -4.0717 -2.3699 4.5128 23 14 -6.1784 -3.9440 3.6384 24 1 -6.5170 -4.8912 4.7309 25 1 -7.0508 -2.7461 3.7337 26 1 -6.3886 -4.6065 2.3262 27 6 0.2888 -4.3523 3.3293 28 6 1.3832 -5.1560 2.6241 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.9579 -2.3276 0.4262 33 1 6.1109 0.5878 0.3383 34 1 7.0539 -0.9388 0.7640 35 1 6.5259 -1.9031 -1.5220 36 1 5.5827 -0.3768 -1.9483 37 1 1.1375 -2.0209 2.7041 38 1 2.3174 -3.2471 3.2260 39 1 2.8656 -1.8070 2.3352 40 1 2.3021 -5.2428 0.6775 41 1 0.2931 -4.5185 -0.5826 42 1 -0.0722 -5.9216 0.4505 43 1 -1.8469 -4.1997 0.6290 44 1 -0.6346 -3.0038 1.1476 45 1 -1.3055 -5.6037 2.5994 46 1 -1.8523 -2.9983 3.7999 47 1 -4.7653 -1.8596 4.9594 48 1 0.1896 -4.6979 4.3582 49 1 0.5547 -3.2952 3.3255 50 1 1.1178 -6.2132 2.6279 51 1 2.3297 -5.0175 3.1468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963689601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:31 Heat of formation + Delta-G solvation = 77.287913 kcal Electronic energy + Delta-G solvation = -32466.557738 eV Core-core repulsion = 28371.062413 eV Total energy + Delta-G solvation = -4095.495325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.99108 -40.54125 -38.02692 -37.67652 -35.11537 -34.65312 -33.23909 -31.85163 -31.02855 -30.65438 -28.80602 -28.15920 -26.46146 -24.91412 -23.83826 -23.38314 -22.82893 -22.30012 -21.32978 -20.14830 -19.65218 -18.88716 -17.89572 -17.54652 -17.13011 -16.64317 -16.30333 -15.91075 -15.53398 -15.11307 -14.50784 -14.26836 -14.06615 -13.74063 -13.47182 -13.40748 -13.34888 -13.20636 -12.93763 -12.83426 -12.40855 -12.30933 -12.24352 -12.01189 -11.97637 -11.77226 -11.64852 -11.61268 -11.37884 -11.04935 -10.87849 -10.83129 -10.60643 -10.38654 -10.24419 -10.12912 -9.95955 -9.71452 -9.64819 -9.55421 -9.31203 -8.84373 -8.57089 -6.93912 -5.76551 -3.04416 1.09726 1.83852 2.36547 2.61064 3.05216 3.36313 3.43031 3.48864 3.50033 3.90383 4.01103 4.31537 4.44526 4.49025 4.57100 4.59003 4.93634 4.98709 5.00577 5.08208 5.16193 5.18829 5.21448 5.38305 5.39267 5.51323 5.52197 5.54140 5.56928 5.58420 5.65649 5.67207 5.70269 5.71744 5.77569 5.85366 5.93600 6.00056 6.07127 6.10361 6.28087 6.40708 6.48606 6.57817 6.65883 6.82075 7.01765 7.15554 7.32120 7.71057 8.09415 8.12171 8.42609 9.53647 10.12165 10.46581 11.46228 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003078 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.822431 B = 9094.982381 C = 9961.351951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.063 3.937 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.038 3.962 6 C -0.091 4.091 7 C -0.162 4.162 8 C -0.156 4.156 9 C -0.232 4.232 10 C 0.601 3.399 11 O -0.523 6.523 12 N -0.589 5.589 13 C 0.068 3.932 14 C 0.155 3.845 15 C -0.137 4.137 16 C -0.128 4.128 17 C 0.181 3.819 18 N -0.725 5.725 19 C -0.234 4.234 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.152 4.152 28 C -0.121 4.121 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.382 0.618 47 H 0.254 0.746 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 1.090 -7.070 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.025 4.025 6 C -0.110 4.110 7 C -0.199 4.199 8 C -0.194 4.194 9 C -0.240 4.240 10 C 0.387 3.613 11 O -0.400 6.400 12 N -0.322 5.322 13 C -0.074 4.074 14 C 0.053 3.947 15 C -0.176 4.176 16 C -0.168 4.168 17 C 0.071 3.929 18 N -0.365 5.365 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.189 4.189 28 C -0.159 4.159 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.215 0.785 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.859 1.990 -7.631 23.239 hybrid contribution -1.249 -0.707 0.198 1.448 sum 20.611 1.283 -7.434 21.948 Atomic orbital electron populations 1.20297 0.84647 1.04361 1.04601 1.24810 0.98730 0.86213 1.00131 1.73637 0.88914 1.23156 1.20580 1.84492 1.21705 1.22196 1.68233 1.23431 0.95319 0.83693 1.00047 1.20450 0.84132 0.99305 1.07074 1.23104 0.96784 1.00388 0.99600 1.23114 1.00647 1.03862 0.91747 1.21830 0.92423 0.95523 1.14183 1.16805 0.77087 0.83763 0.83681 1.90780 1.50342 1.67517 1.31326 1.47761 1.67982 1.10873 1.05549 1.22205 1.01476 0.97364 0.86351 1.21105 0.97201 0.79392 0.97032 1.21988 0.94048 1.00954 1.00603 1.22161 0.97021 0.99110 0.98549 1.20180 0.87476 0.95226 0.90040 1.42405 1.02151 1.33011 1.58919 1.19230 0.83451 1.08775 1.25095 0.91325 1.24707 0.97846 0.97949 1.00499 1.69650 1.32020 1.19595 1.37027 0.86235 0.85383 0.77281 0.77597 1.21805 1.21837 1.20815 1.22439 0.95427 1.01606 0.99459 1.21816 0.99240 1.01012 0.93871 0.88928 0.89934 0.89545 0.84564 0.87580 0.87385 0.87310 0.88003 0.91208 0.89179 0.92337 0.91067 0.90514 0.91485 0.92313 0.93050 0.93904 0.78497 0.93608 0.91787 0.90064 0.90243 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.49 36.01 0.38 -0.70 16 2 C 0.06 0.89 7.59 -79.76 -0.61 0.28 16 3 N -0.36 -5.03 12.01 34.78 0.42 -4.62 16 4 O 0.10 1.19 10.86 18.67 0.20 1.39 16 5 C 0.04 0.44 6.72 -34.63 -0.23 0.21 16 6 C -0.09 -0.75 6.15 -91.76 -0.56 -1.32 16 7 C -0.16 -0.97 10.18 -26.73 -0.27 -1.24 16 8 C -0.16 -1.05 10.23 -26.73 -0.27 -1.33 16 9 C -0.23 -3.15 4.56 -102.90 -0.47 -3.62 16 10 C 0.60 8.73 7.20 -12.53 -0.09 8.64 16 11 O -0.52 -9.14 15.15 5.27 0.08 -9.06 16 12 N -0.59 -7.48 2.25 -175.22 -0.39 -7.87 16 13 C 0.07 0.75 8.02 59.84 0.48 1.23 16 14 C 0.15 1.96 2.94 -67.93 -0.20 1.76 16 15 C -0.14 -2.06 5.23 -26.73 -0.14 -2.20 16 16 C -0.13 -2.30 5.34 -26.73 -0.14 -2.44 16 17 C 0.18 3.41 2.77 -67.93 -0.19 3.23 16 18 N -0.72 -17.53 5.12 -53.43 -0.27 -17.81 16 19 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 23 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.15 -2.24 4.73 -26.73 -0.13 -2.37 16 28 C -0.12 -1.40 4.91 -26.73 -0.13 -1.53 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 0.65 8.02 -51.93 -0.42 0.24 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.88 6.70 -51.93 -0.35 0.53 16 38 H 0.09 0.85 4.95 -51.93 -0.26 0.59 16 39 H 0.06 0.58 6.90 -51.93 -0.36 0.22 16 40 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.08 1.28 6.11 -51.93 -0.32 0.96 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 45 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 46 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.17 3.66 -51.93 -0.19 0.98 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -32.44 402.38 -9.02 -41.46 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.00 Total: 8.60 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.82 Total: -8.42 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.47 Total: -57.36 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.28 Total: -7.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.44 -9.02 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963689601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.747 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds