Wall clock time and date at job start Wed Apr 1 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30016 * 127.32989 * 2 1 4 4 O 1.20665 * 112.29902 * 179.97438 * 3 2 1 5 5 C 1.33485 * 113.15498 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.82980 * 179.97438 * 5 4 3 7 7 C 1.53007 * 117.49767 * 8.62064 * 6 5 4 8 8 C 1.53002 * 60.00185 * 252.51290 * 7 6 5 9 9 C 1.37355 * 106.34724 * 359.97438 * 5 4 3 10 10 C 1.47395 * 128.56980 * 180.25985 * 9 5 4 11 11 O 1.21608 * 120.00153 * 269.70341 * 10 9 5 12 12 N 1.34784 * 119.99985 * 89.69864 * 10 9 5 13 13 C 1.46491 * 120.00020 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99914 * 179.97438 * 12 10 9 15 15 C 1.52999 * 109.47443 * 300.80558 * 14 12 10 16 16 C 1.53001 * 109.47090 * 300.00007 * 15 14 12 17 17 C 1.52999 * 109.47020 * 299.99690 * 16 15 14 18 18 N 1.46498 * 109.47005 * 179.97438 * 17 16 15 19 19 C 1.36941 * 119.99956 * 85.00195 * 18 17 16 20 20 H 1.07996 * 119.99731 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00035 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46978 * 89.99794 * 23 21 19 25 25 H 1.48496 * 109.46966 * 209.99604 * 23 21 19 26 26 H 1.48492 * 109.47202 * 330.00174 * 23 21 19 27 27 C 1.52999 * 109.46936 * 60.00216 * 17 16 15 28 28 C 1.52999 * 109.47260 * 180.80505 * 14 12 10 29 29 H 1.08997 * 109.46901 * 270.04079 * 1 2 3 30 30 H 1.08996 * 109.47219 * 30.04131 * 1 2 3 31 31 H 1.09002 * 109.46711 * 150.04230 * 1 2 3 32 32 H 1.08997 * 115.55210 * 154.32856 * 6 5 4 33 33 H 1.09005 * 117.49400 * 0.02562 * 7 6 5 34 34 H 1.08995 * 117.49902 * 145.01772 * 7 6 5 35 35 H 1.09000 * 117.49848 * 252.51461 * 8 7 6 36 36 H 1.08999 * 117.52242 * 107.47617 * 8 7 6 37 37 H 1.09000 * 109.47259 * 84.08317 * 13 12 10 38 38 H 1.08993 * 109.47339 * 204.08398 * 13 12 10 39 39 H 1.09005 * 109.47450 * 324.08565 * 13 12 10 40 40 H 1.09007 * 109.47190 * 60.80276 * 14 12 10 41 41 H 1.09001 * 109.46950 * 60.00265 * 15 14 12 42 42 H 1.09003 * 109.47158 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.46557 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47099 * 60.00379 * 16 15 14 45 45 H 1.09003 * 109.47427 * 300.00098 * 17 16 15 46 46 H 0.96995 * 120.00211 * 265.00165 * 18 17 16 47 47 H 0.96994 * 120.00363 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.47296 * 179.97438 * 27 17 16 49 49 H 1.09003 * 109.47158 * 59.99718 * 27 17 16 50 50 H 1.09003 * 109.47427 * 180.02562 * 28 14 12 51 51 H 1.09006 * 109.47113 * 300.00253 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 6 6.2354 -0.4868 0.2039 8 6 5.9169 -1.0683 -1.1750 9 6 2.3993 -1.1695 0.0003 10 6 2.0402 -2.5991 0.0054 11 8 1.8888 -3.1917 -1.0457 12 7 1.8798 -3.2495 1.1749 13 6 2.0617 -2.5355 2.4411 14 6 1.5224 -4.6702 1.1800 15 6 0.1939 -4.8645 0.4463 16 6 -0.9005 -4.0608 1.1515 17 6 -1.0396 -4.5466 2.5956 18 7 -2.0871 -3.7767 3.2710 19 6 -3.3979 -4.1560 3.1557 20 1 -3.6593 -5.0230 2.5672 21 6 -4.3904 -3.4262 3.7952 22 7 -4.0717 -2.3699 4.5128 23 14 -6.1784 -3.9440 3.6384 24 1 -6.5170 -4.8912 4.7309 25 1 -7.0508 -2.7461 3.7337 26 1 -6.3886 -4.6065 2.3262 27 6 0.2888 -4.3523 3.3293 28 6 1.3832 -5.1560 2.6241 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 4.9579 -2.3276 0.4262 33 1 6.1109 0.5878 0.3383 34 1 7.0539 -0.9388 0.7640 35 1 6.5259 -1.9031 -1.5220 36 1 5.5827 -0.3768 -1.9483 37 1 1.1375 -2.0209 2.7041 38 1 2.3174 -3.2471 3.2260 39 1 2.8656 -1.8070 2.3352 40 1 2.3021 -5.2428 0.6775 41 1 0.2931 -4.5185 -0.5826 42 1 -0.0722 -5.9216 0.4505 43 1 -1.8469 -4.1997 0.6290 44 1 -0.6346 -3.0038 1.1476 45 1 -1.3055 -5.6037 2.5994 46 1 -1.8523 -2.9983 3.7999 47 1 -4.7653 -1.8596 4.9594 48 1 0.1896 -4.6979 4.3582 49 1 0.5547 -3.2952 3.3255 50 1 1.1178 -6.2132 2.6279 51 1 2.3297 -5.0175 3.1468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963689601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:30 Heat of formation + Delta-G solvation = 59.200756 kcal Electronic energy + Delta-G solvation = -32467.342056 eV Core-core repulsion = 28371.062413 eV Total energy + Delta-G solvation = -4096.279643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.02278 -41.67450 -39.23146 -38.32970 -36.60650 -35.76192 -34.77618 -33.09987 -32.39998 -31.99231 -29.90212 -29.66090 -27.59625 -26.17444 -25.14565 -24.59485 -23.57368 -23.30992 -22.54460 -21.45948 -20.65743 -19.99827 -19.13611 -18.89759 -18.53796 -17.56032 -17.24938 -17.14142 -16.77362 -16.40170 -15.87031 -15.39458 -15.31216 -15.22304 -14.74100 -14.66264 -14.44552 -14.36292 -14.11542 -13.95919 -13.86225 -13.58084 -13.15885 -13.07883 -13.06095 -12.85277 -12.81805 -12.70609 -12.54504 -12.42411 -12.16971 -12.15003 -12.04312 -11.90011 -11.51839 -11.42829 -11.32835 -11.12105 -11.06857 -10.97604 -10.64260 -10.20915 -9.65565 -8.96227 -7.93385 -5.19933 0.17319 0.76028 1.26369 1.45556 1.46172 1.54375 1.67578 2.06746 2.55931 2.78672 2.95517 3.12235 3.39451 3.48036 3.61760 3.76280 3.82351 3.88378 3.92463 3.97981 4.13226 4.18726 4.32993 4.37912 4.39787 4.41917 4.43984 4.47608 4.50991 4.57916 4.62916 4.65691 4.68592 4.76975 4.81912 4.86869 4.92747 4.97004 5.06521 5.07041 5.13386 5.21494 5.21795 5.26254 5.31408 5.47869 5.54855 5.66041 5.69221 6.25607 6.30088 7.00034 7.12063 7.35988 8.14524 8.36911 9.29889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003078 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.822431 B = 9094.982381 C = 9961.351951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.372 5.372 4 O 0.098 5.902 5 C 0.059 3.941 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.154 4.154 9 C -0.258 4.258 10 C 0.603 3.397 11 O -0.559 6.559 12 N -0.583 5.583 13 C 0.068 3.932 14 C 0.155 3.845 15 C -0.130 4.130 16 C -0.115 4.115 17 C 0.176 3.824 18 N -0.735 5.735 19 C -0.233 4.233 20 H 0.069 0.931 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.964 3.036 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.274 1.274 27 C -0.145 4.145 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.126 -0.150 -6.742 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 N -0.079 5.079 4 O 0.037 5.963 5 C -0.004 4.004 6 C -0.132 4.132 7 C -0.178 4.178 8 C -0.191 4.191 9 C -0.265 4.265 10 C 0.390 3.610 11 O -0.438 6.438 12 N -0.314 5.314 13 C -0.074 4.074 14 C 0.053 3.947 15 C -0.169 4.169 16 C -0.155 4.155 17 C 0.068 3.932 18 N -0.374 5.374 19 C -0.365 4.365 20 H 0.087 0.913 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.794 3.206 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.200 1.200 27 C -0.182 4.182 28 C -0.148 4.148 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 24.689 0.722 -7.307 25.757 hybrid contribution -2.050 -0.319 0.037 2.075 sum 22.639 0.403 -7.270 23.781 Atomic orbital electron populations 1.20224 0.84817 1.04250 1.04192 1.24922 0.98960 0.86767 1.00600 1.73614 0.89463 1.23475 1.21360 1.84464 1.21020 1.22850 1.67929 1.23996 0.96162 0.82997 0.97276 1.20698 0.83267 0.99921 1.09289 1.23231 0.95597 1.00101 0.98915 1.23233 0.99812 1.04395 0.91690 1.21782 0.93202 0.94990 1.16522 1.16915 0.76526 0.83982 0.83601 1.90755 1.52108 1.68347 1.32603 1.47805 1.66934 1.10998 1.05682 1.22293 1.01010 0.98090 0.86003 1.21171 0.96059 0.79650 0.97779 1.21897 0.94468 1.00923 0.99582 1.21942 0.96688 0.98915 0.97982 1.20415 0.88421 0.93906 0.90443 1.42608 1.02417 1.33212 1.59213 1.19547 0.85025 1.08164 1.23788 0.91338 1.25429 1.01570 0.98462 1.01160 1.69791 1.32738 1.20857 1.38454 0.85272 0.80896 0.76640 0.77801 1.21361 1.22365 1.19957 1.22369 0.94027 1.02747 0.99072 1.21789 0.99469 1.00920 0.92575 0.89474 0.88842 0.90810 0.83538 0.87808 0.84854 0.85439 0.88888 0.93199 0.86829 0.90987 0.89106 0.92182 0.90178 0.95591 0.94333 0.94598 0.79633 0.94185 0.91995 0.89668 0.88913 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 10.49 71.24 0.75 -1.42 16 2 C 0.05 1.41 7.59 45.16 0.34 1.76 16 3 N -0.37 -10.56 12.01 -44.77 -0.54 -11.10 16 4 O 0.10 2.40 10.86 77.05 0.84 3.24 16 5 C 0.06 1.30 6.72 25.48 0.17 1.47 16 6 C -0.11 -1.60 6.15 -11.53 -0.07 -1.67 16 7 C -0.14 -1.24 10.18 30.60 0.31 -0.93 16 8 C -0.15 -1.67 10.23 30.60 0.31 -1.36 16 9 C -0.26 -6.92 4.56 -18.75 -0.09 -7.01 16 10 C 0.60 17.27 7.20 86.65 0.62 17.89 16 11 O -0.56 -19.57 15.15 -4.05 -0.06 -19.63 16 12 N -0.58 -13.91 2.25 -826.53 -1.86 -15.77 16 13 C 0.07 1.36 8.02 127.77 1.02 2.38 16 14 C 0.16 3.56 2.94 44.99 0.13 3.70 16 15 C -0.13 -3.82 5.23 30.59 0.16 -3.66 16 16 C -0.11 -4.22 5.34 30.59 0.16 -4.06 16 17 C 0.18 6.65 2.77 44.99 0.12 6.78 16 18 N -0.74 -36.28 5.12 -322.95 -1.65 -37.94 16 19 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.97 -58.81 13.06 21.65 0.28 -58.52 16 23 Si 0.96 46.59 29.55 68.60 2.03 48.62 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 C -0.14 -4.02 4.73 30.59 0.14 -3.88 16 28 C -0.11 -2.13 4.91 30.59 0.15 -1.98 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 1.00 8.02 -2.38 -0.02 0.98 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.23 6.70 -2.39 -0.02 1.22 16 38 H 0.11 1.73 4.95 -2.39 -0.01 1.72 16 39 H 0.07 1.27 6.90 -2.38 -0.02 1.26 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.06 2.01 6.11 -2.39 -0.01 2.00 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 1.49 7.60 -2.39 -0.02 1.47 16 45 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 46 H 0.37 19.59 7.80 -92.71 -0.72 18.87 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.09 2.34 3.66 -2.39 -0.01 2.34 16 50 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.10 1.35 6.90 -2.38 -0.02 1.33 16 Total: -1.00 -72.40 402.38 4.82 -67.58 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.23 Total: 31.38 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.55 Total: -7.86 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -3.77 Total: -123.33 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.78 Total: -16.40 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.40 4.82 -67.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963689601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.779 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds