Wall clock time and date at job start Wed Apr 1 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34863 * 119.09790 * 2 1 4 4 C 1.41667 * 119.33677 * 180.26147 * 3 2 1 5 5 O 1.22086 * 121.06852 * 179.77008 * 4 3 2 6 6 C 1.47100 * 117.86510 * 359.74683 * 4 3 2 7 7 C 1.47285 * 120.88340 * 179.97438 * 6 4 3 8 8 O 1.21617 * 120.00005 * 0.02740 * 7 6 4 9 9 N 1.34779 * 120.00088 * 180.02562 * 7 6 4 10 10 C 1.46504 * 120.00200 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47342 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.45116 * 295.00570 * 11 10 9 13 13 C 1.54865 * 109.45029 * 175.05655 * 11 10 9 14 14 C 1.47050 * 110.31971 * 168.65877 * 13 11 10 15 15 C 1.52561 * 114.29521 * 62.88119 * 14 13 11 16 16 C 1.50880 * 109.34951 * 274.93720 * 15 14 13 17 17 C 1.53945 * 110.09320 * 91.88769 * 16 15 14 18 18 N 1.44580 * 109.44990 * 54.95014 * 11 10 9 19 19 C 1.36943 * 118.63991 * 30.75520 * 18 11 10 20 20 H 1.08000 * 119.99628 * 313.94627 * 19 18 11 21 21 C 1.38809 * 119.99950 * 133.94502 * 19 18 11 22 22 N 1.31616 * 120.00100 * 200.29371 * 21 19 18 23 23 Si 1.86802 * 120.00152 * 20.29437 * 21 19 18 24 24 H 1.48504 * 109.47238 * 92.32232 * 23 21 19 25 25 H 1.48493 * 109.47275 * 212.32429 * 23 21 19 26 26 H 1.48501 * 109.46764 * 332.32570 * 23 21 19 27 27 C 1.37993 * 118.23695 * 359.97438 * 6 4 3 28 28 N 1.34342 * 120.36619 * 359.97438 * 27 6 4 29 29 C 1.46498 * 118.80275 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.46961 * 264.00915 * 1 2 3 31 31 H 1.08996 * 109.46890 * 24.00955 * 1 2 3 32 32 H 1.08997 * 109.46724 * 144.01205 * 1 2 3 33 33 H 1.08001 * 120.33234 * 0.02562 * 3 2 1 34 34 H 0.96994 * 119.99925 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47175 * 300.00904 * 10 9 7 36 36 H 1.09000 * 109.46537 * 60.00398 * 10 9 7 37 37 H 1.09005 * 109.32634 * 288.96587 * 13 11 10 38 38 H 1.08993 * 109.33221 * 48.44537 * 13 11 10 39 39 H 1.09002 * 108.55758 * 301.61705 * 14 13 11 40 40 H 1.09002 * 108.38064 * 184.01912 * 14 13 11 41 41 H 1.08996 * 109.49463 * 154.97982 * 15 14 13 42 42 H 1.09000 * 109.49309 * 34.90302 * 15 14 13 43 43 H 1.09002 * 109.36867 * 331.69769 * 16 15 14 44 44 H 1.09000 * 109.26811 * 212.01387 * 16 15 14 45 45 H 1.09001 * 108.95054 * 198.75200 * 17 16 15 46 46 H 1.08998 * 108.94894 * 80.12841 * 17 16 15 47 47 H 0.96997 * 120.00383 * 180.02562 * 22 21 19 48 48 H 1.07992 * 119.81514 * 179.97438 * 27 6 4 49 49 H 1.09000 * 109.47152 * 96.48155 * 29 28 27 50 50 H 1.09000 * 109.47242 * 216.48072 * 29 28 27 51 51 H 1.09001 * 109.47489 * 336.48131 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 -0.0056 5 8 4.2052 2.2327 -0.0100 6 6 4.2725 -0.1132 -0.0055 7 6 5.7436 -0.1846 -0.0118 8 8 6.4020 0.8379 -0.0166 9 7 6.3601 -1.3831 -0.0121 10 6 7.8234 -1.4542 -0.0189 11 6 8.2629 -2.9196 -0.0184 12 1 7.9554 -3.3905 0.9152 13 6 9.8039 -2.9959 -0.1514 14 6 10.2725 -4.3638 0.1162 15 6 9.7575 -5.4079 -0.8698 16 6 8.3979 -5.8877 -0.4250 17 6 7.2957 -5.0408 -1.0867 18 7 7.6460 -3.6076 -1.1304 19 6 7.3760 -2.9004 -2.2716 20 1 6.9061 -1.9301 -2.2070 21 6 7.7061 -3.4306 -3.5112 22 7 7.8282 -2.6378 -4.5547 23 14 7.9771 -5.2693 -3.6985 24 1 6.7016 -5.9201 -4.0920 25 1 9.0015 -5.5146 -4.7451 26 1 8.4435 -5.8349 -2.4070 27 6 3.5077 -1.2618 0.0006 28 7 2.1665 -1.1846 0.0068 29 6 1.3881 -2.4257 0.0137 30 1 -0.3633 -0.1073 1.0220 31 1 -0.3633 0.9387 -0.4181 32 1 -0.3633 -0.8315 -0.6039 33 1 1.6136 2.1083 0.0004 34 1 5.8350 -2.1986 -0.0086 35 1 8.2071 -0.9604 -0.9117 36 1 8.2154 -0.9567 0.8682 37 1 10.0937 -2.7056 -1.1614 38 1 10.2620 -2.3122 0.5631 39 1 9.9555 -4.6491 1.1193 40 1 11.3621 -4.3662 0.0851 41 1 10.4481 -6.2506 -0.9010 42 1 9.6798 -4.9639 -1.8622 43 1 8.3200 -5.7994 0.6586 44 1 8.2731 -6.9317 -0.7125 45 1 6.3702 -5.1619 -0.5237 46 1 7.1380 -5.3978 -2.1045 47 1 8.0586 -3.0083 -5.4210 48 1 3.9900 -2.2280 0.0004 49 1 1.1017 -2.6692 1.0368 50 1 0.4922 -2.2961 -0.5934 51 1 1.9914 -3.2353 -0.3971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968899513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:17 Heat of formation + Delta-G solvation = 8.369897 kcal Electronic energy + Delta-G solvation = -32374.654313 eV Core-core repulsion = 28276.170479 eV Total energy + Delta-G solvation = -4098.483834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.19900 -40.68060 -39.76338 -38.82361 -36.13519 -35.13635 -34.51913 -33.83000 -33.35691 -32.92276 -29.61046 -28.43064 -27.67059 -27.05828 -25.46276 -25.16485 -23.85795 -22.56416 -21.73856 -21.37082 -20.88459 -19.36985 -18.60931 -18.06236 -17.41259 -17.21792 -17.08776 -16.89013 -16.76292 -16.36707 -15.94295 -15.73992 -15.51299 -15.23118 -14.88477 -14.71390 -14.56575 -14.32550 -14.21643 -13.83684 -13.82439 -13.73520 -13.66737 -13.44565 -13.30341 -13.22836 -12.80917 -12.65620 -12.50517 -12.38839 -12.12645 -11.96998 -11.64140 -11.28478 -11.25825 -11.19104 -10.97895 -10.51600 -10.47676 -10.28885 -9.97568 -9.89295 -9.02331 -8.53486 -7.98318 -5.57657 -0.17535 0.33551 1.38255 1.47079 1.48562 1.57820 1.96165 2.34420 2.55758 2.83455 3.13065 3.24254 3.40668 3.61278 3.68879 3.81925 4.00342 4.10615 4.21514 4.25548 4.27172 4.37401 4.42468 4.44213 4.48316 4.53543 4.58254 4.72332 4.74258 4.79796 4.84067 4.86900 4.87890 4.99645 5.06407 5.15653 5.17463 5.22153 5.25323 5.34289 5.39920 5.47816 5.55531 5.60182 5.65339 5.72823 5.76462 5.81463 6.07976 6.44992 6.77258 7.10801 7.17834 7.46677 7.80029 8.16515 9.08179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.003520 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.280458 B = 7952.035558 C = 8520.478899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.187 3.813 3 C -0.306 4.306 4 C 0.381 3.619 5 O -0.570 6.570 6 C -0.350 4.350 7 C 0.559 3.441 8 O -0.592 6.592 9 N -0.692 5.692 10 C 0.132 3.868 11 C 0.190 3.810 12 H 0.091 0.909 13 C -0.134 4.134 14 C -0.098 4.098 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.130 3.870 18 N -0.604 5.604 19 C -0.255 4.255 20 H 0.048 0.952 21 C -0.027 4.027 22 N -0.959 5.959 23 Si 0.871 3.129 24 H -0.299 1.299 25 H -0.348 1.348 26 H -0.117 1.117 27 C 0.219 3.781 28 N -0.456 5.456 29 C 0.032 3.968 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.158 0.842 34 H 0.408 0.592 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.024 0.976 47 H 0.250 0.750 48 H 0.201 0.799 49 H 0.113 0.887 50 H 0.120 0.880 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 -12.746 16.190 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 C -0.329 4.329 4 C 0.274 3.726 5 O -0.459 6.459 6 C -0.361 4.361 7 C 0.348 3.652 8 O -0.473 6.473 9 N -0.344 5.344 10 C 0.007 3.993 11 C 0.083 3.917 12 H 0.109 0.891 13 C -0.175 4.175 14 C -0.136 4.136 15 C -0.163 4.163 16 C -0.164 4.164 17 C 0.007 3.993 18 N -0.329 5.329 19 C -0.385 4.385 20 H 0.065 0.935 21 C -0.223 4.223 22 N -0.603 5.603 23 Si 0.704 3.296 24 H -0.228 1.228 25 H -0.281 1.281 26 H -0.039 1.039 27 C 0.084 3.916 28 N -0.139 5.139 29 C -0.106 4.106 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.175 0.825 34 H 0.245 0.755 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.217 0.783 49 H 0.132 0.868 50 H 0.138 0.862 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.239 -11.703 16.104 26.334 hybrid contribution 0.654 0.126 -1.843 1.959 sum -16.584 -11.578 14.261 24.748 Atomic orbital electron populations 1.21402 0.83491 1.06769 1.06279 1.20917 0.97231 0.83794 0.90135 1.22125 0.93710 0.99620 1.17490 1.18999 0.90581 0.87669 0.75331 1.90744 1.71864 1.35525 1.47801 1.22296 0.93379 0.96584 1.23797 1.18071 0.87571 0.83462 0.76053 1.90757 1.67644 1.36431 1.52501 1.45497 1.07629 1.07156 1.74091 1.21414 0.79803 0.98865 0.99186 1.20603 0.91162 0.88830 0.91077 0.89148 1.21289 0.97789 0.98177 1.00221 1.20266 0.99807 0.93860 0.99617 1.21371 0.97338 0.98415 0.99221 1.21819 0.94043 0.99197 1.01373 1.21912 0.96770 0.83236 0.97378 1.43842 1.70352 1.05637 1.13104 1.18643 1.33729 1.01803 0.84298 0.93470 1.26338 0.96617 1.02491 0.96826 1.70191 1.51982 1.36611 1.01492 0.87966 0.76448 0.83954 0.81260 1.22791 1.28115 1.03876 1.22522 0.83173 0.99321 0.86537 1.43180 1.04692 1.09200 1.56808 1.23128 0.98326 0.82054 1.07111 0.86606 0.88364 0.87038 0.82462 0.75464 0.96052 0.91998 0.95642 0.91512 0.90290 0.92904 0.91373 0.93938 0.89274 0.90370 0.92835 0.95801 0.94099 0.78255 0.86843 0.86151 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.34 71.24 0.67 0.23 16 2 C 0.19 2.90 6.64 41.21 0.27 3.17 16 3 C -0.31 -8.32 9.57 22.34 0.21 -8.10 16 4 C 0.38 15.81 6.96 25.44 0.18 15.99 16 5 O -0.57 -30.95 16.41 13.54 0.22 -30.73 16 6 C -0.35 -12.99 6.05 -18.63 -0.11 -13.11 16 7 C 0.56 25.59 7.77 86.62 0.67 26.26 16 8 O -0.59 -34.41 15.57 15.05 0.23 -34.17 16 9 N -0.69 -26.44 4.07 -466.51 -1.90 -28.34 16 10 C 0.13 5.38 4.38 86.38 0.38 5.75 16 11 C 0.19 6.43 2.19 45.98 0.10 6.53 16 12 H 0.09 2.38 8.06 -2.39 -0.02 2.36 16 13 C -0.13 -4.48 5.06 29.38 0.15 -4.33 16 14 C -0.10 -2.62 5.15 28.60 0.15 -2.47 16 15 C -0.13 -3.61 4.81 29.76 0.14 -3.46 16 16 C -0.13 -3.05 4.81 30.22 0.15 -2.90 16 17 C 0.13 4.02 5.42 86.49 0.47 4.49 16 18 N -0.60 -23.13 1.64 -674.27 -1.11 -24.24 16 19 C -0.25 -13.16 8.51 84.03 0.72 -12.45 16 20 H 0.05 2.85 6.07 -2.91 -0.02 2.83 16 21 C -0.03 -1.54 5.50 84.86 0.47 -1.07 16 22 N -0.96 -62.12 13.97 21.65 0.30 -61.81 16 23 Si 0.87 39.90 23.41 68.60 1.61 41.51 16 24 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.35 -18.04 7.11 99.48 0.71 -17.33 16 26 H -0.12 -4.14 1.77 99.48 0.18 -3.97 16 27 C 0.22 4.80 9.80 84.25 0.83 5.62 16 28 N -0.46 -6.13 2.97 -532.77 -1.58 -7.71 16 29 C 0.03 0.04 9.98 127.77 1.27 1.31 16 30 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.10 0.37 7.97 -2.39 -0.02 0.35 16 32 H 0.11 -0.20 6.02 -2.39 -0.01 -0.21 16 33 H 0.16 3.81 8.01 -2.91 -0.02 3.78 16 34 H 0.41 12.53 6.15 -92.71 -0.57 11.96 16 35 H 0.02 1.10 7.24 -2.39 -0.02 1.09 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 39 H 0.08 1.66 7.36 -2.39 -0.02 1.65 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.58 4.37 -2.39 -0.01 1.57 16 43 H 0.09 1.69 7.32 -2.39 -0.02 1.67 16 44 H 0.08 1.61 8.02 -2.39 -0.02 1.59 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.02 0.87 1.98 -2.39 0.00 0.87 16 47 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.20 3.03 6.28 -2.91 -0.02 3.01 16 49 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 50 H 0.12 -0.39 5.95 -2.39 -0.01 -0.41 16 51 H 0.11 -0.01 7.85 -2.39 -0.02 -0.03 16 Total: -1.00 -106.40 378.05 4.34 -102.06 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.14 Total: 21.97 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.70 Total: 21.46 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -4.29 Total: -122.10 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: 0.46 Total: -64.90 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.61 Total: 41.51 kcal Total: -106.40 4.34 -102.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968899513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.429 kcal (2) G-P(sol) polarization free energy of solvation -106.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds