Wall clock time and date at job start Wed Apr 1 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34869 * 119.10443 * 2 1 4 4 C 1.41657 * 119.33998 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06648 * 179.72719 * 4 3 2 6 6 C 1.47101 * 117.86796 * 359.97438 * 4 3 2 7 7 C 1.47289 * 120.88368 * 179.97438 * 6 4 3 8 8 O 1.21611 * 120.00270 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99817 * 180.02562 * 7 6 4 10 10 C 1.46504 * 120.00042 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47287 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.44722 * 64.94778 * 11 10 9 13 13 C 1.54858 * 109.44988 * 184.86819 * 11 10 9 14 14 C 1.47096 * 110.32157 * 191.29339 * 13 11 10 15 15 C 1.52564 * 114.32991 * 297.19222 * 14 13 11 16 16 C 1.50877 * 109.34922 * 85.02282 * 15 14 13 17 17 C 1.53935 * 110.10020 * 268.11477 * 16 15 14 18 18 N 1.44574 * 109.44895 * 305.00434 * 11 10 9 19 19 C 1.36942 * 118.64268 * 329.26390 * 18 11 10 20 20 H 1.08004 * 119.99962 * 327.20136 * 19 18 11 21 21 C 1.38808 * 119.99986 * 147.19971 * 19 18 11 22 22 N 1.31620 * 120.00285 * 346.40699 * 21 19 18 23 23 Si 1.86803 * 119.99895 * 166.40269 * 21 19 18 24 24 H 1.48500 * 109.47193 * 89.99973 * 23 21 19 25 25 H 1.48508 * 109.47174 * 210.00145 * 23 21 19 26 26 H 1.48500 * 109.47148 * 329.99842 * 23 21 19 27 27 C 1.37993 * 118.23592 * 0.02562 * 6 4 3 28 28 N 1.34353 * 120.36964 * 359.95602 * 27 6 4 29 29 C 1.46494 * 118.80517 * 180.02562 * 28 27 6 30 30 H 1.09006 * 109.47335 * 96.13895 * 1 2 3 31 31 H 1.09001 * 109.47681 * 216.14467 * 1 2 3 32 32 H 1.09000 * 109.47129 * 336.14638 * 1 2 3 33 33 H 1.08002 * 120.32685 * 359.94981 * 3 2 1 34 34 H 0.97004 * 120.00008 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.46974 * 300.00492 * 10 9 7 36 36 H 1.09004 * 109.46349 * 60.00026 * 10 9 7 37 37 H 1.09001 * 109.33079 * 311.55634 * 13 11 10 38 38 H 1.09002 * 109.33187 * 71.03331 * 13 11 10 39 39 H 1.09000 * 108.51154 * 175.93748 * 14 13 11 40 40 H 1.08999 * 108.38802 * 58.36186 * 14 13 11 41 41 H 1.09001 * 109.49211 * 325.06360 * 15 14 13 42 42 H 1.08992 * 109.51256 * 205.00414 * 15 14 13 43 43 H 1.08999 * 109.36684 * 147.91767 * 16 15 14 44 44 H 1.09007 * 109.26379 * 28.24562 * 16 15 14 45 45 H 1.09008 * 108.94715 * 279.87607 * 17 16 15 46 46 H 1.08993 * 108.88379 * 161.19848 * 17 16 15 47 47 H 0.96996 * 119.99837 * 180.02562 * 22 21 19 48 48 H 1.07992 * 119.81560 * 179.97438 * 27 6 4 49 49 H 1.09002 * 109.47645 * 263.91284 * 29 28 27 50 50 H 1.09004 * 109.47013 * 23.91429 * 29 28 27 51 51 H 1.09000 * 109.46762 * 143.91147 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1842 0.0006 5 8 4.2052 2.2325 -0.0044 6 6 4.2724 -0.1133 0.0017 7 6 5.7436 -0.1848 0.0017 8 8 6.4021 0.8376 0.0004 9 7 6.3601 -1.3834 0.0023 10 6 7.8234 -1.4545 0.0018 11 6 8.2628 -2.9200 0.0019 12 1 7.9498 -3.3928 -0.9290 13 6 9.8046 -2.9960 0.1253 14 6 10.2715 -4.3653 -0.1412 15 6 9.7617 -5.4072 0.8499 16 6 8.3993 -5.8872 0.4139 17 6 7.3013 -5.0387 1.0801 18 7 7.6524 -3.6055 1.1189 19 6 7.3886 -2.8957 2.2599 20 1 8.0394 -2.0857 2.5546 21 6 6.2849 -3.2174 3.0378 22 7 5.3497 -4.0095 2.5578 23 14 6.1267 -2.5260 4.7659 24 1 5.4030 -1.2302 4.7164 25 1 5.3717 -3.4825 5.6147 26 1 7.4797 -2.3156 5.3407 27 6 3.5076 -1.2619 0.0016 28 7 2.1663 -1.1848 0.0014 29 6 1.3879 -2.4258 0.0019 30 1 -0.3634 -0.1099 -1.0218 31 1 -0.3634 -0.8298 0.6061 32 1 -0.3633 0.9399 0.4156 33 1 1.6137 2.1083 -0.0008 34 1 5.8348 -2.1989 0.0022 35 1 8.2108 -0.9594 -0.8886 36 1 8.2114 -0.9583 0.8914 37 1 10.2582 -2.3139 -0.5938 38 1 10.1008 -2.7035 1.1326 39 1 11.3612 -4.3699 -0.1182 40 1 9.9463 -4.6509 -1.1415 41 1 9.6898 -4.9611 1.8418 42 1 10.4521 -6.2500 0.8794 43 1 8.2745 -6.9310 0.7023 44 1 8.3168 -5.7994 -0.6695 45 1 7.1493 -5.3936 2.0995 46 1 6.3735 -5.1607 0.5213 47 1 4.5783 -4.2339 3.1013 48 1 3.9899 -2.2282 0.0020 49 1 1.1026 -2.6763 -1.0199 50 1 1.9907 -3.2326 0.4190 51 1 0.4913 -2.2920 0.6071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968899514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:22 Heat of formation + Delta-G solvation = -16.207126 kcal Electronic energy + Delta-G solvation = -32616.797155 eV Core-core repulsion = 28517.247581 eV Total energy + Delta-G solvation = -4099.549574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.97723 -38.87925 -37.99772 -37.22018 -34.32987 -33.49044 -33.30390 -32.48031 -31.43635 -30.72696 -28.38767 -26.85481 -26.67883 -25.51750 -23.93678 -23.49600 -22.36028 -21.20281 -20.08593 -19.62037 -19.19645 -17.77386 -17.32270 -16.28077 -15.96672 -15.89709 -15.55531 -15.33119 -14.67116 -14.61568 -14.26116 -14.16247 -13.99349 -13.60544 -13.51789 -13.48421 -13.23869 -13.13822 -12.96730 -12.65617 -12.61487 -12.33610 -12.04908 -11.98123 -11.80102 -11.74571 -11.42953 -11.22021 -11.09191 -10.84554 -10.61490 -10.23939 -10.05567 -9.98978 -9.73685 -9.60388 -9.53930 -9.34035 -9.28584 -8.67665 -8.47920 -8.04883 -7.63822 -6.67355 -5.89203 -3.36418 1.16258 1.54368 2.51483 3.33965 3.40413 3.46414 3.58076 4.01911 4.17968 4.38786 4.45262 4.53627 4.71507 4.86716 4.90711 5.12534 5.18952 5.20557 5.29882 5.32174 5.35797 5.42336 5.50553 5.54447 5.64429 5.72497 5.87669 5.93279 5.99923 6.02230 6.10604 6.16507 6.36003 6.38648 6.56583 6.59265 6.64740 6.66345 6.72089 6.76705 6.79549 6.82434 6.97750 7.00871 7.11693 7.32025 7.44290 7.56190 7.79943 8.41345 8.51580 8.53664 9.17042 9.21719 9.79626 10.27116 11.17121 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.003979 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.641846 B = 7035.229255 C = 7613.349154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 C -0.278 4.278 4 C 0.408 3.592 5 O -0.489 6.489 6 C -0.293 4.293 7 C 0.569 3.431 8 O -0.536 6.536 9 N -0.696 5.696 10 C 0.133 3.867 11 C 0.174 3.826 12 H 0.043 0.957 13 C -0.137 4.137 14 C -0.100 4.100 15 C -0.107 4.107 16 C -0.143 4.143 17 C 0.183 3.817 18 N -0.583 5.583 19 C -0.242 4.242 20 H 0.060 0.940 21 C 0.017 3.983 22 N -0.907 5.907 23 Si 0.888 3.112 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.181 3.819 28 N -0.470 5.470 29 C 0.049 3.951 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.024 0.976 47 H 0.250 0.750 48 H 0.175 0.825 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -4.324 -7.560 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.303 4.303 4 C 0.294 3.706 5 O -0.370 6.370 6 C -0.303 4.303 7 C 0.356 3.644 8 O -0.414 6.414 9 N -0.347 5.347 10 C 0.009 3.991 11 C 0.065 3.935 12 H 0.061 0.939 13 C -0.178 4.178 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.058 3.942 18 N -0.305 5.305 19 C -0.372 4.372 20 H 0.078 0.922 21 C -0.181 4.181 22 N -0.552 5.552 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.051 3.949 28 N -0.157 5.157 29 C -0.092 4.092 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.165 0.835 34 H 0.239 0.761 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.192 0.808 49 H 0.097 0.903 50 H 0.119 0.881 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.051 -3.285 -7.496 12.203 hybrid contribution -0.415 -0.368 1.201 1.323 sum -9.467 -3.653 -6.296 11.941 Atomic orbital electron populations 1.21154 0.88455 1.04823 1.03795 1.20235 0.94643 0.85264 0.95051 1.22215 0.96493 0.96908 1.14646 1.18166 0.88124 0.88073 0.76194 1.90780 1.70044 1.33323 1.42892 1.22598 0.95014 0.94628 1.18093 1.17383 0.85859 0.83877 0.77321 1.90772 1.65940 1.34382 1.50335 1.45563 1.07618 1.07606 1.73937 1.21401 0.80030 0.97220 1.00492 1.20526 0.91164 0.90574 0.91226 0.93872 1.21366 0.98758 0.96059 1.01581 1.20289 0.98797 0.95962 0.98759 1.20944 0.95879 0.96942 1.00658 1.22064 0.97175 0.99219 0.99725 1.20936 0.91769 0.81796 0.99671 1.43701 1.70896 1.04520 1.11385 1.19009 1.04998 1.13822 0.99324 0.92190 1.24928 0.95098 0.99229 0.98873 1.69991 1.09711 1.39834 1.35681 0.86515 0.77925 0.78402 0.85352 1.21367 1.21799 1.20506 1.22455 0.81687 1.00674 0.90096 1.42548 1.05520 1.06939 1.60725 1.22535 0.97842 0.84968 1.03886 0.89582 0.90187 0.89161 0.83498 0.76091 0.93313 0.91511 0.93222 0.91832 0.94102 0.93556 0.90795 0.94225 0.93315 0.93757 0.91515 0.95817 0.94064 0.80816 0.90334 0.88079 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.34 36.00 0.34 -0.45 16 2 C 0.15 1.75 6.64 -82.13 -0.55 1.20 16 3 C -0.28 -4.14 9.57 -39.47 -0.38 -4.52 16 4 C 0.41 8.37 6.96 -34.68 -0.24 8.12 16 5 O -0.49 -12.23 16.41 -15.17 -0.25 -12.47 16 6 C -0.29 -5.77 6.05 -102.71 -0.62 -6.40 16 7 C 0.57 12.90 7.77 -12.58 -0.10 12.81 16 8 O -0.54 -14.35 15.57 -14.75 -0.23 -14.58 16 9 N -0.70 -14.22 4.67 -61.43 -0.29 -14.51 16 10 C 0.13 2.67 4.52 -4.04 -0.02 2.65 16 11 C 0.17 3.23 2.19 -67.98 -0.15 3.08 16 12 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 13 C -0.14 -2.31 5.06 -28.59 -0.14 -2.45 16 14 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 15 C -0.11 -1.74 5.51 -28.02 -0.15 -1.90 16 16 C -0.14 -2.39 5.71 -27.31 -0.16 -2.55 16 17 C 0.18 3.70 4.66 -2.95 -0.01 3.68 16 18 N -0.58 -12.15 1.75 -164.47 -0.29 -12.43 16 19 C -0.24 -5.80 7.45 -15.06 -0.11 -5.91 16 20 H 0.06 1.56 6.94 -52.48 -0.36 1.19 16 21 C 0.02 0.41 4.89 -17.43 -0.09 0.33 16 22 N -0.91 -21.75 11.34 55.49 0.63 -21.12 16 23 Si 0.89 21.02 29.57 -169.99 -5.03 15.99 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.18 2.73 9.80 -16.54 -0.16 2.57 16 28 N -0.47 -5.41 2.97 -119.75 -0.36 -5.76 16 29 C 0.05 0.34 9.98 59.84 0.60 0.94 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.37 6.01 -51.93 -0.31 0.06 16 32 H 0.09 0.50 7.97 -51.93 -0.41 0.09 16 33 H 0.15 1.89 8.00 -52.49 -0.42 1.47 16 34 H 0.40 7.91 6.16 -40.82 -0.25 7.65 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.51 6.94 -51.93 -0.36 1.14 16 37 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 41 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 45 H 0.07 1.54 6.75 -51.92 -0.35 1.19 16 46 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 47 H 0.25 5.97 8.31 -40.82 -0.34 5.63 16 48 H 0.17 2.52 6.28 -52.49 -0.33 2.19 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 51 H 0.09 0.44 5.95 -51.93 -0.31 0.13 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -33.65 395.33 -9.97 -43.61 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.02 Total: 5.82 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.10 Total: 9.51 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.30 Total: -53.83 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.48 Total: -27.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.65 -9.97 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968899514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.404 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds