Wall clock time and date at job start Wed Apr 1 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34869 * 119.10443 * 2 1 4 4 C 1.41657 * 119.33998 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06648 * 179.72719 * 4 3 2 6 6 C 1.47101 * 117.86796 * 359.97438 * 4 3 2 7 7 C 1.47289 * 120.88368 * 179.97438 * 6 4 3 8 8 O 1.21611 * 120.00270 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99817 * 180.02562 * 7 6 4 10 10 C 1.46504 * 120.00042 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47287 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.44722 * 64.94778 * 11 10 9 13 13 C 1.54858 * 109.44988 * 184.86819 * 11 10 9 14 14 C 1.47096 * 110.32157 * 191.29339 * 13 11 10 15 15 C 1.52564 * 114.32991 * 297.19222 * 14 13 11 16 16 C 1.50877 * 109.34922 * 85.02282 * 15 14 13 17 17 C 1.53935 * 110.10020 * 268.11477 * 16 15 14 18 18 N 1.44574 * 109.44895 * 305.00434 * 11 10 9 19 19 C 1.36942 * 118.64268 * 329.26390 * 18 11 10 20 20 H 1.08004 * 119.99962 * 327.20136 * 19 18 11 21 21 C 1.38808 * 119.99986 * 147.19971 * 19 18 11 22 22 N 1.31620 * 120.00285 * 346.40699 * 21 19 18 23 23 Si 1.86803 * 119.99895 * 166.40269 * 21 19 18 24 24 H 1.48500 * 109.47193 * 89.99973 * 23 21 19 25 25 H 1.48508 * 109.47174 * 210.00145 * 23 21 19 26 26 H 1.48500 * 109.47148 * 329.99842 * 23 21 19 27 27 C 1.37993 * 118.23592 * 0.02562 * 6 4 3 28 28 N 1.34353 * 120.36964 * 359.95602 * 27 6 4 29 29 C 1.46494 * 118.80517 * 180.02562 * 28 27 6 30 30 H 1.09006 * 109.47335 * 96.13895 * 1 2 3 31 31 H 1.09001 * 109.47681 * 216.14467 * 1 2 3 32 32 H 1.09000 * 109.47129 * 336.14638 * 1 2 3 33 33 H 1.08002 * 120.32685 * 359.94981 * 3 2 1 34 34 H 0.97004 * 120.00008 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.46974 * 300.00492 * 10 9 7 36 36 H 1.09004 * 109.46349 * 60.00026 * 10 9 7 37 37 H 1.09001 * 109.33079 * 311.55634 * 13 11 10 38 38 H 1.09002 * 109.33187 * 71.03331 * 13 11 10 39 39 H 1.09000 * 108.51154 * 175.93748 * 14 13 11 40 40 H 1.08999 * 108.38802 * 58.36186 * 14 13 11 41 41 H 1.09001 * 109.49211 * 325.06360 * 15 14 13 42 42 H 1.08992 * 109.51256 * 205.00414 * 15 14 13 43 43 H 1.08999 * 109.36684 * 147.91767 * 16 15 14 44 44 H 1.09007 * 109.26379 * 28.24562 * 16 15 14 45 45 H 1.09008 * 108.94715 * 279.87607 * 17 16 15 46 46 H 1.08993 * 108.88379 * 161.19848 * 17 16 15 47 47 H 0.96996 * 119.99837 * 180.02562 * 22 21 19 48 48 H 1.07992 * 119.81560 * 179.97438 * 27 6 4 49 49 H 1.09002 * 109.47645 * 263.91284 * 29 28 27 50 50 H 1.09004 * 109.47013 * 23.91429 * 29 28 27 51 51 H 1.09000 * 109.46762 * 143.91147 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1842 0.0006 5 8 4.2052 2.2325 -0.0044 6 6 4.2724 -0.1133 0.0017 7 6 5.7436 -0.1848 0.0017 8 8 6.4021 0.8376 0.0004 9 7 6.3601 -1.3834 0.0023 10 6 7.8234 -1.4545 0.0018 11 6 8.2628 -2.9200 0.0019 12 1 7.9498 -3.3928 -0.9290 13 6 9.8046 -2.9960 0.1253 14 6 10.2715 -4.3653 -0.1412 15 6 9.7617 -5.4072 0.8499 16 6 8.3993 -5.8872 0.4139 17 6 7.3013 -5.0387 1.0801 18 7 7.6524 -3.6055 1.1189 19 6 7.3886 -2.8957 2.2599 20 1 8.0394 -2.0857 2.5546 21 6 6.2849 -3.2174 3.0378 22 7 5.3497 -4.0095 2.5578 23 14 6.1267 -2.5260 4.7659 24 1 5.4030 -1.2302 4.7164 25 1 5.3717 -3.4825 5.6147 26 1 7.4797 -2.3156 5.3407 27 6 3.5076 -1.2619 0.0016 28 7 2.1663 -1.1848 0.0014 29 6 1.3879 -2.4258 0.0019 30 1 -0.3634 -0.1099 -1.0218 31 1 -0.3634 -0.8298 0.6061 32 1 -0.3633 0.9399 0.4156 33 1 1.6137 2.1083 -0.0008 34 1 5.8348 -2.1989 0.0022 35 1 8.2108 -0.9594 -0.8886 36 1 8.2114 -0.9583 0.8914 37 1 10.2582 -2.3139 -0.5938 38 1 10.1008 -2.7035 1.1326 39 1 11.3612 -4.3699 -0.1182 40 1 9.9463 -4.6509 -1.1415 41 1 9.6898 -4.9611 1.8418 42 1 10.4521 -6.2500 0.8794 43 1 8.2745 -6.9310 0.7023 44 1 8.3168 -5.7994 -0.6695 45 1 7.1493 -5.3936 2.0995 46 1 6.3735 -5.1607 0.5213 47 1 4.5783 -4.2339 3.1013 48 1 3.9899 -2.2282 0.0020 49 1 1.1026 -2.6763 -1.0199 50 1 1.9907 -3.2326 0.4190 51 1 0.4913 -2.2920 0.6071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968899514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:21 Heat of formation + Delta-G solvation = -36.459659 kcal Electronic energy + Delta-G solvation = -32617.675371 eV Core-core repulsion = 28517.247581 eV Total energy + Delta-G solvation = -4100.427789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17219 -40.49059 -39.52302 -38.75965 -35.93941 -35.17344 -34.44864 -33.74340 -32.86838 -32.44986 -29.49911 -28.26485 -27.67561 -27.05929 -25.20778 -25.15858 -23.81882 -22.48850 -21.62300 -21.05807 -20.75411 -19.20623 -18.58157 -17.86901 -17.25165 -17.19044 -16.94042 -16.76081 -16.32713 -16.19338 -15.89663 -15.61808 -15.45801 -15.17930 -14.86979 -14.72804 -14.35524 -14.19743 -14.17783 -13.82151 -13.81000 -13.66339 -13.40838 -13.27985 -13.14210 -12.91622 -12.85465 -12.71941 -12.65002 -12.50576 -12.37728 -12.02193 -11.54975 -11.37558 -11.27287 -11.18261 -11.13315 -10.90683 -10.45647 -10.36911 -10.25418 -9.78504 -9.00056 -8.45549 -7.79142 -5.24981 -0.14695 0.34479 1.36770 1.42331 1.49718 1.49969 1.99779 2.43463 2.53509 2.86273 3.27551 3.35386 3.62255 3.63276 3.71893 3.84701 4.06675 4.12231 4.25362 4.28363 4.32396 4.43919 4.45710 4.48669 4.52547 4.64266 4.69466 4.70745 4.75928 4.82851 4.85673 4.88892 5.04125 5.09895 5.14531 5.15936 5.26660 5.28586 5.34832 5.40714 5.45728 5.58019 5.67976 5.71843 5.74369 5.79413 5.84170 5.85124 5.91501 6.52965 6.84730 7.10740 7.31315 7.51355 8.01513 8.41534 9.23032 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.003979 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.641846 B = 7035.229255 C = 7613.349154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.186 3.814 3 C -0.307 4.307 4 C 0.384 3.616 5 O -0.568 6.568 6 C -0.349 4.349 7 C 0.561 3.439 8 O -0.593 6.593 9 N -0.686 5.686 10 C 0.135 3.865 11 C 0.178 3.822 12 H 0.063 0.937 13 C -0.130 4.130 14 C -0.099 4.099 15 C -0.104 4.104 16 C -0.133 4.133 17 C 0.191 3.809 18 N -0.585 5.585 19 C -0.235 4.235 20 H 0.032 0.968 21 C -0.006 4.006 22 N -0.903 5.903 23 Si 0.915 3.085 24 H -0.308 1.308 25 H -0.283 1.283 26 H -0.290 1.290 27 C 0.220 3.780 28 N -0.456 5.456 29 C 0.035 3.965 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.408 0.592 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.015 0.985 47 H 0.250 0.750 48 H 0.185 0.815 49 H 0.113 0.887 50 H 0.098 0.902 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 -7.956 -9.201 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.457 6.457 6 C -0.359 4.359 7 C 0.350 3.650 8 O -0.475 6.475 9 N -0.336 5.336 10 C 0.010 3.990 11 C 0.071 3.929 12 H 0.081 0.919 13 C -0.171 4.171 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.172 4.172 17 C 0.067 3.933 18 N -0.308 5.308 19 C -0.366 4.366 20 H 0.050 0.950 21 C -0.204 4.204 22 N -0.549 5.549 23 Si 0.747 3.253 24 H -0.237 1.237 25 H -0.209 1.209 26 H -0.216 1.216 27 C 0.086 3.914 28 N -0.139 5.139 29 C -0.103 4.103 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.179 0.821 34 H 0.245 0.755 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.060 0.940 48 H 0.202 0.798 49 H 0.131 0.869 50 H 0.117 0.883 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.902 -7.017 -9.143 16.568 hybrid contribution 0.320 0.598 1.720 1.849 sum -11.582 -6.419 -7.423 15.180 Atomic orbital electron populations 1.21401 0.83389 1.06778 1.06292 1.20980 0.97318 0.83714 0.90209 1.22129 0.93737 0.99493 1.17662 1.18921 0.90525 0.87464 0.75317 1.90722 1.71797 1.35235 1.47918 1.22376 0.93806 0.96294 1.23453 1.17959 0.87375 0.83471 0.76229 1.90718 1.67469 1.36162 1.53196 1.45495 1.07724 1.07210 1.73156 1.21412 0.79985 0.98343 0.99252 1.20623 0.92231 0.89043 0.91052 0.91914 1.21296 0.97108 0.97967 1.00709 1.20265 0.99954 0.94234 0.99215 1.20910 0.96353 0.97863 0.99056 1.21951 0.95790 0.99139 1.00299 1.20788 0.93010 0.81480 0.98045 1.43710 1.71013 1.04980 1.11057 1.18781 1.04205 1.13114 1.00531 0.95046 1.25086 0.95625 1.00096 0.99594 1.69985 1.09570 1.39770 1.35532 0.86132 0.76961 0.77195 0.84991 1.23666 1.20897 1.21620 1.22431 0.83300 0.99248 0.86470 1.43144 1.04599 1.09229 1.56951 1.23056 0.98131 0.82224 1.06919 0.86557 0.87295 0.88037 0.82066 0.75505 0.92428 0.94969 0.91391 0.94374 0.92262 0.91754 0.94113 0.91871 0.91793 0.91996 0.94746 0.96671 0.94033 0.79807 0.86865 0.88333 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.34 71.23 0.67 -0.14 16 2 C 0.19 3.59 6.64 41.20 0.27 3.87 16 3 C -0.31 -9.14 9.57 22.34 0.21 -8.93 16 4 C 0.38 16.91 6.96 25.44 0.18 17.09 16 5 O -0.57 -31.40 16.41 13.54 0.22 -31.18 16 6 C -0.35 -14.47 6.05 -18.63 -0.11 -14.58 16 7 C 0.56 27.30 7.77 86.62 0.67 27.98 16 8 O -0.59 -34.77 15.57 15.07 0.23 -34.53 16 9 N -0.69 -29.23 4.67 -466.50 -2.18 -31.41 16 10 C 0.13 5.65 4.52 86.38 0.39 6.04 16 11 C 0.18 6.56 2.19 45.98 0.10 6.66 16 12 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 13 C -0.13 -4.27 5.06 29.39 0.15 -4.12 16 14 C -0.10 -2.77 5.16 28.61 0.15 -2.62 16 15 C -0.10 -3.15 5.51 29.76 0.16 -2.99 16 16 C -0.13 -4.07 5.71 30.22 0.17 -3.90 16 17 C 0.19 7.51 4.66 86.48 0.40 7.91 16 18 N -0.59 -24.44 1.75 -674.27 -1.18 -25.62 16 19 C -0.24 -11.65 7.45 84.03 0.63 -11.02 16 20 H 0.03 1.74 6.94 -2.91 -0.02 1.72 16 21 C -0.01 -0.32 4.89 84.86 0.41 0.10 16 22 N -0.90 -42.86 11.34 21.65 0.25 -42.61 16 23 Si 0.92 44.05 29.57 68.60 2.03 46.07 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 C 0.22 6.43 9.80 84.25 0.83 7.25 16 28 N -0.46 -8.90 2.97 -532.77 -1.58 -10.49 16 29 C 0.04 0.29 9.98 127.77 1.27 1.57 16 30 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.11 0.20 6.01 -2.39 -0.01 0.19 16 32 H 0.10 0.60 7.97 -2.39 -0.02 0.58 16 33 H 0.16 4.17 8.00 -2.91 -0.02 4.14 16 34 H 0.41 16.18 6.16 -92.71 -0.57 15.61 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.03 1.56 6.94 -2.39 -0.02 1.55 16 37 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.61 7.35 -2.39 -0.02 1.60 16 41 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.71 7.31 -2.38 -0.02 1.69 16 45 H 0.03 1.57 6.75 -2.38 -0.02 1.55 16 46 H 0.02 0.62 7.98 -2.39 -0.02 0.60 16 47 H 0.25 11.67 8.31 -92.71 -0.77 10.90 16 48 H 0.19 5.03 6.28 -2.91 -0.02 5.02 16 49 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.10 1.01 7.86 -2.39 -0.02 0.99 16 51 H 0.12 0.32 5.95 -2.39 -0.01 0.31 16 Total: -1.00 -84.47 395.33 4.72 -79.75 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.37 Total: 19.87 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 6.56 Total: 30.14 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.70 Total: -110.13 kcal Atomic # 8 Polarization: -66.16 SS G_CDS: 0.46 Total: -65.71 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -84.47 4.72 -79.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968899514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.287 kcal (2) G-P(sol) polarization free energy of solvation -84.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds