Wall clock time and date at job start Wed Apr 1 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30013 * 127.33930 * 2 1 4 4 O 1.20650 * 112.30345 * 180.27531 * 3 2 1 5 5 C 1.33486 * 113.16073 * 359.73029 * 4 3 2 6 6 C 1.50697 * 126.83376 * 179.97438 * 5 4 3 7 7 C 1.53006 * 117.49616 * 15.10003 * 6 5 4 8 8 C 1.53004 * 117.50108 * 306.43934 * 6 5 4 9 9 C 1.37361 * 106.33990 * 0.02562 * 5 4 3 10 10 C 1.47400 * 128.56705 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99528 * 91.90884 * 10 9 5 12 12 N 1.34778 * 120.00065 * 271.91309 * 10 9 5 13 13 C 1.46496 * 119.99650 * 185.25175 * 12 10 9 14 14 C 1.53006 * 109.46889 * 182.43256 * 13 12 10 15 15 H 1.09004 * 109.42227 * 294.57959 * 14 13 12 16 16 C 1.54311 * 109.19083 * 174.86739 * 14 13 12 17 17 C 1.47087 * 110.29324 * 168.68842 * 16 14 13 18 18 C 1.52568 * 114.33031 * 62.73248 * 17 16 14 19 19 C 1.50874 * 109.35580 * 274.97966 * 18 17 16 20 20 C 1.53947 * 110.09919 * 91.87926 * 19 18 17 21 21 N 1.44575 * 109.45252 * 54.51487 * 14 13 12 22 22 C 1.36940 * 118.64017 * 30.76101 * 21 14 13 23 23 H 1.07999 * 119.99814 * 28.54346 * 22 21 14 24 24 C 1.38816 * 119.99691 * 208.52944 * 22 21 14 25 25 N 1.31619 * 120.00074 * 22.42759 * 24 22 21 26 26 Si 1.86795 * 119.99732 * 202.41919 * 24 22 21 27 27 H 1.48504 * 109.47243 * 174.99357 * 26 24 22 28 28 H 1.48499 * 109.47246 * 54.99324 * 26 24 22 29 29 H 1.48504 * 109.47358 * 294.99337 * 26 24 22 30 30 H 1.09011 * 109.46976 * 270.14681 * 1 2 3 31 31 H 1.08995 * 109.47316 * 30.14971 * 1 2 3 32 32 H 1.09000 * 109.47000 * 150.15310 * 1 2 3 33 33 H 1.08997 * 115.55017 * 160.76534 * 6 5 4 34 34 H 1.09000 * 117.50064 * 359.97438 * 7 6 5 35 35 H 1.09000 * 117.49476 * 145.02125 * 7 6 5 36 36 H 1.08991 * 117.49685 * 214.97382 * 8 6 5 37 37 H 1.08999 * 117.49338 * 359.97438 * 8 6 5 38 38 H 0.96998 * 119.99614 * 5.24867 * 12 10 9 39 39 H 1.09000 * 109.47946 * 62.42971 * 13 12 10 40 40 H 1.09008 * 109.47136 * 302.42273 * 13 12 10 41 41 H 1.08999 * 109.40249 * 48.39412 * 16 14 13 42 42 H 1.09000 * 109.13686 * 288.81498 * 16 14 13 43 43 H 1.08995 * 108.51495 * 301.47710 * 17 16 14 44 44 H 1.09002 * 108.38790 * 183.89176 * 17 16 14 45 45 H 1.08997 * 109.49361 * 155.01282 * 18 17 16 46 46 H 1.09003 * 109.49047 * 34.94134 * 18 17 16 47 47 H 1.09004 * 109.36478 * 331.69515 * 19 18 17 48 48 H 1.08999 * 109.26916 * 212.00888 * 19 18 17 49 49 H 1.08990 * 108.95314 * 198.74954 * 20 19 18 50 50 H 1.09003 * 108.94268 * 80.12494 * 20 19 18 51 51 H 0.96996 * 119.99842 * 5.42190 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4607 0.7207 -0.0054 5 6 3.6494 -0.6008 -0.0042 6 6 4.9711 -1.3246 -0.0102 7 6 6.2221 -0.5141 0.3352 8 6 5.9720 -0.9589 -1.1081 9 6 2.3992 -1.1696 0.0025 10 6 2.0400 -2.5992 0.0059 11 8 1.8629 -3.1791 1.0600 12 7 1.9081 -3.2637 -1.1593 13 6 1.4397 -4.6517 -1.1619 14 6 1.4376 -5.1866 -2.5954 15 1 0.7022 -4.6394 -3.1853 16 6 1.0681 -6.6847 -2.5774 17 6 0.7949 -7.1592 -3.9425 18 6 1.9891 -7.0744 -4.8883 19 6 2.0578 -5.6899 -5.4839 20 6 2.9580 -4.7869 -4.6213 21 7 2.7493 -5.0100 -3.1772 22 6 3.8436 -5.0569 -2.3552 23 1 3.8146 -5.6462 -1.4507 24 6 4.9902 -4.3473 -2.6850 25 7 4.9140 -3.3140 -3.4966 26 14 6.6411 -4.8588 -1.9765 27 1 7.7155 -4.0244 -2.5723 28 1 6.8930 -6.2882 -2.2904 29 1 6.6275 -4.6705 -0.5035 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8886 -0.5161 32 1 -0.3633 -0.8914 -0.5115 33 1 4.9392 -2.3643 0.3157 34 1 6.0891 0.5428 0.5663 35 1 7.0133 -1.0207 0.8878 36 1 6.5988 -1.7577 -1.5042 37 1 5.6742 -0.1949 -1.8263 38 1 2.1231 -2.8227 -1.9961 39 1 0.4289 -4.6951 -0.7564 40 1 2.1039 -5.2604 -0.5481 41 1 0.1818 -6.8316 -1.9601 42 1 1.8984 -7.2524 -2.1574 43 1 -0.0191 -6.5658 -4.3588 44 1 0.4707 -8.1984 -3.8869 45 1 1.8741 -7.8082 -5.6860 46 1 2.9061 -7.2783 -4.3354 47 1 1.0550 -5.2648 -5.5272 48 1 2.4679 -5.7519 -6.4919 49 1 2.7404 -3.7445 -4.8535 50 1 4.0008 -4.9915 -4.8639 51 1 4.0486 -2.9999 -3.8019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968955230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:30 Heat of formation + Delta-G solvation = 63.101003 kcal Electronic energy + Delta-G solvation = -33214.260082 eV Core-core repulsion = 29118.149567 eV Total energy + Delta-G solvation = -4096.110515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.59839 -39.23060 -38.14438 -37.03949 -34.60372 -34.31762 -33.80308 -32.00187 -31.25914 -30.56710 -28.67633 -27.11716 -25.89553 -24.26427 -23.29645 -23.26387 -22.13417 -22.04162 -20.29230 -19.83448 -19.25079 -19.09509 -17.76919 -17.44510 -16.79323 -16.12494 -15.70629 -15.53873 -15.19595 -14.75512 -14.18781 -14.05832 -13.99546 -13.66581 -13.33009 -13.30304 -13.21549 -12.97620 -12.85027 -12.73747 -12.24032 -12.08810 -11.94034 -11.76003 -11.42560 -11.30813 -11.12521 -11.03416 -10.89760 -10.75935 -10.31716 -10.27123 -10.18331 -10.12740 -10.09145 -9.98547 -9.89087 -9.69401 -9.52246 -9.24140 -8.79724 -8.41967 -8.30567 -6.93320 -6.06467 -3.29875 1.57040 2.13598 2.93684 3.08075 3.38624 3.45333 3.58520 3.83436 4.10288 4.31668 4.45574 4.48972 4.96435 5.00868 5.08800 5.21427 5.26275 5.29502 5.36744 5.39428 5.44530 5.48586 5.54572 5.66406 5.72806 5.75850 5.78815 5.84054 5.90954 5.94213 5.98293 6.11929 6.19906 6.22603 6.24260 6.38308 6.40852 6.48500 6.50415 6.50729 6.53205 6.62723 6.67560 6.82629 6.97530 7.02376 7.11565 7.16267 8.01483 8.14516 8.44249 8.55005 8.74836 9.09234 9.79666 10.16540 11.17430 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.005040 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.048750 B = 5554.532470 C = 7150.521635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.050 3.950 3 N -0.363 5.363 4 O 0.089 5.911 5 C 0.066 3.934 6 C -0.089 4.089 7 C -0.176 4.176 8 C -0.126 4.126 9 C -0.243 4.243 10 C 0.598 3.402 11 O -0.549 6.549 12 N -0.675 5.675 13 C 0.131 3.869 14 C 0.176 3.824 15 H 0.041 0.959 16 C -0.135 4.135 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.137 4.137 20 C 0.158 3.842 21 N -0.588 5.588 22 C -0.346 4.346 23 H 0.052 0.948 24 C -0.008 4.008 25 N -0.909 5.909 26 Si 1.042 2.958 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.293 1.293 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.407 0.593 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.016 0.984 50 H 0.070 0.930 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 2.084 1.073 5.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 N -0.071 5.071 4 O 0.029 5.971 5 C 0.003 3.997 6 C -0.108 4.108 7 C -0.213 4.213 8 C -0.163 4.163 9 C -0.250 4.250 10 C 0.381 3.619 11 O -0.428 6.428 12 N -0.323 5.323 13 C 0.006 3.994 14 C 0.067 3.933 15 H 0.059 0.941 16 C -0.176 4.176 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.176 4.176 20 C 0.033 3.967 21 N -0.311 5.311 22 C -0.475 4.475 23 H 0.069 0.931 24 C -0.211 4.211 25 N -0.549 5.549 26 Si 0.873 3.127 27 H -0.209 1.209 28 H -0.224 1.224 29 H -0.220 1.220 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.243 0.757 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.034 0.966 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.609 3.318 1.757 5.208 hybrid contribution -1.640 -1.182 -0.345 2.051 sum -5.249 2.135 1.412 5.840 Atomic orbital electron populations 1.20157 0.85503 1.03788 1.03566 1.24645 0.98315 0.86872 1.01361 1.73553 0.89182 1.23414 1.20972 1.84441 1.21372 1.22794 1.68486 1.23623 0.95924 0.82843 0.97354 1.20486 0.83136 0.98568 1.08617 1.23139 0.97603 1.00274 1.00301 1.23010 0.99338 1.03410 0.90518 1.21863 0.92263 0.95601 1.15263 1.16749 0.77258 0.83628 0.84260 1.90754 1.51892 1.68680 1.31448 1.45572 1.64788 1.13591 1.08389 1.21529 0.97382 0.82003 0.98459 1.20375 0.88615 0.92957 0.91321 0.94085 1.21262 1.00494 0.99444 0.96420 1.20288 0.97834 0.99483 0.96238 1.20939 0.99578 0.96259 0.97640 1.21941 1.00077 0.96675 0.98872 1.21222 0.98445 0.94443 0.82590 1.43734 1.00903 1.84579 1.01862 1.19789 0.93760 1.27197 1.06772 0.93068 1.25432 1.01567 0.94119 0.99983 1.70805 1.28347 1.20677 1.35068 0.83856 0.77234 0.75919 0.75654 1.20929 1.22354 1.22026 0.89885 0.90220 0.90006 0.84448 0.88224 0.87876 0.86759 0.88265 0.75684 0.93214 0.90908 0.93223 0.91682 0.93564 0.93967 0.93981 0.90646 0.93572 0.93042 0.96594 0.91124 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.49 36.00 0.38 -0.54 16 2 C 0.05 0.83 7.59 -79.77 -0.61 0.23 16 3 N -0.36 -6.26 12.01 34.78 0.42 -5.84 16 4 O 0.09 1.54 10.92 18.67 0.20 1.74 16 5 C 0.07 1.17 6.99 -34.63 -0.24 0.93 16 6 C -0.09 -1.52 6.15 -91.77 -0.56 -2.09 16 7 C -0.18 -2.44 10.19 -26.69 -0.27 -2.71 16 8 C -0.13 -2.06 10.24 -26.69 -0.27 -2.33 16 9 C -0.24 -4.49 6.25 -102.89 -0.64 -5.14 16 10 C 0.60 11.93 7.63 -12.53 -0.10 11.83 16 11 O -0.55 -12.43 17.11 5.27 0.09 -12.34 16 12 N -0.68 -12.86 4.66 -61.39 -0.29 -13.15 16 13 C 0.13 2.40 4.51 -4.04 -0.02 2.38 16 14 C 0.18 3.13 2.17 -68.27 -0.15 2.98 16 15 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 16 C -0.14 -2.18 5.04 -28.88 -0.15 -2.32 16 17 C -0.10 -1.50 5.15 -29.79 -0.15 -1.66 16 18 C -0.11 -1.71 5.51 -28.02 -0.15 -1.87 16 19 C -0.14 -2.27 5.71 -27.30 -0.16 -2.43 16 20 C 0.16 3.16 4.48 -2.94 -0.01 3.15 16 21 N -0.59 -11.91 1.66 -164.80 -0.27 -12.18 16 22 C -0.35 -8.01 7.53 -15.06 -0.11 -8.12 16 23 H 0.05 1.29 6.81 -52.49 -0.36 0.93 16 24 C -0.01 -0.19 4.66 -17.43 -0.08 -0.27 16 25 N -0.91 -22.22 12.57 55.49 0.70 -21.53 16 26 Si 1.04 22.76 29.21 -169.99 -4.96 17.79 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 30 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.14 2.60 8.14 -51.93 -0.42 2.18 16 34 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.11 2.06 7.35 -51.93 -0.38 1.68 16 37 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.41 8.06 8.12 -40.82 -0.33 7.73 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.52 6.87 -51.92 -0.36 1.16 16 41 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 47 H 0.05 0.73 7.32 -51.93 -0.38 0.35 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.02 0.34 7.05 -51.93 -0.37 -0.03 16 50 H 0.07 1.62 6.70 -51.93 -0.35 1.28 16 51 H 0.27 6.64 6.06 -40.82 -0.25 6.39 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -25.82 404.63 -9.56 -35.38 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.24 Total: 11.98 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.30 Total: -7.96 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.56 Total: -52.69 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.29 Total: -10.60 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.96 Total: 17.79 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -25.82 -9.56 -35.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968955230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.484 kcal (2) G-P(sol) polarization free energy of solvation -25.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds