Wall clock time and date at job start Wed Apr 1 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30013 * 127.33930 * 2 1 4 4 O 1.20650 * 112.30345 * 180.27531 * 3 2 1 5 5 C 1.33486 * 113.16073 * 359.73029 * 4 3 2 6 6 C 1.50697 * 126.83376 * 179.97438 * 5 4 3 7 7 C 1.53006 * 117.49616 * 15.10003 * 6 5 4 8 8 C 1.53004 * 117.50108 * 306.43934 * 6 5 4 9 9 C 1.37361 * 106.33990 * 0.02562 * 5 4 3 10 10 C 1.47400 * 128.56705 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99528 * 91.90884 * 10 9 5 12 12 N 1.34778 * 120.00065 * 271.91309 * 10 9 5 13 13 C 1.46496 * 119.99650 * 185.25175 * 12 10 9 14 14 C 1.53006 * 109.46889 * 182.43256 * 13 12 10 15 15 H 1.09004 * 109.42227 * 294.57959 * 14 13 12 16 16 C 1.54311 * 109.19083 * 174.86739 * 14 13 12 17 17 C 1.47087 * 110.29324 * 168.68842 * 16 14 13 18 18 C 1.52568 * 114.33031 * 62.73248 * 17 16 14 19 19 C 1.50874 * 109.35580 * 274.97966 * 18 17 16 20 20 C 1.53947 * 110.09919 * 91.87926 * 19 18 17 21 21 N 1.44575 * 109.45252 * 54.51487 * 14 13 12 22 22 C 1.36940 * 118.64017 * 30.76101 * 21 14 13 23 23 H 1.07999 * 119.99814 * 28.54346 * 22 21 14 24 24 C 1.38816 * 119.99691 * 208.52944 * 22 21 14 25 25 N 1.31619 * 120.00074 * 22.42759 * 24 22 21 26 26 Si 1.86795 * 119.99732 * 202.41919 * 24 22 21 27 27 H 1.48504 * 109.47243 * 174.99357 * 26 24 22 28 28 H 1.48499 * 109.47246 * 54.99324 * 26 24 22 29 29 H 1.48504 * 109.47358 * 294.99337 * 26 24 22 30 30 H 1.09011 * 109.46976 * 270.14681 * 1 2 3 31 31 H 1.08995 * 109.47316 * 30.14971 * 1 2 3 32 32 H 1.09000 * 109.47000 * 150.15310 * 1 2 3 33 33 H 1.08997 * 115.55017 * 160.76534 * 6 5 4 34 34 H 1.09000 * 117.50064 * 359.97438 * 7 6 5 35 35 H 1.09000 * 117.49476 * 145.02125 * 7 6 5 36 36 H 1.08991 * 117.49685 * 214.97382 * 8 6 5 37 37 H 1.08999 * 117.49338 * 359.97438 * 8 6 5 38 38 H 0.96998 * 119.99614 * 5.24867 * 12 10 9 39 39 H 1.09000 * 109.47946 * 62.42971 * 13 12 10 40 40 H 1.09008 * 109.47136 * 302.42273 * 13 12 10 41 41 H 1.08999 * 109.40249 * 48.39412 * 16 14 13 42 42 H 1.09000 * 109.13686 * 288.81498 * 16 14 13 43 43 H 1.08995 * 108.51495 * 301.47710 * 17 16 14 44 44 H 1.09002 * 108.38790 * 183.89176 * 17 16 14 45 45 H 1.08997 * 109.49361 * 155.01282 * 18 17 16 46 46 H 1.09003 * 109.49047 * 34.94134 * 18 17 16 47 47 H 1.09004 * 109.36478 * 331.69515 * 19 18 17 48 48 H 1.08999 * 109.26916 * 212.00888 * 19 18 17 49 49 H 1.08990 * 108.95314 * 198.74954 * 20 19 18 50 50 H 1.09003 * 108.94268 * 80.12494 * 20 19 18 51 51 H 0.96996 * 119.99842 * 5.42190 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4607 0.7207 -0.0054 5 6 3.6494 -0.6008 -0.0042 6 6 4.9711 -1.3246 -0.0102 7 6 6.2221 -0.5141 0.3352 8 6 5.9720 -0.9589 -1.1081 9 6 2.3992 -1.1696 0.0025 10 6 2.0400 -2.5992 0.0059 11 8 1.8629 -3.1791 1.0600 12 7 1.9081 -3.2637 -1.1593 13 6 1.4397 -4.6517 -1.1619 14 6 1.4376 -5.1866 -2.5954 15 1 0.7022 -4.6394 -3.1853 16 6 1.0681 -6.6847 -2.5774 17 6 0.7949 -7.1592 -3.9425 18 6 1.9891 -7.0744 -4.8883 19 6 2.0578 -5.6899 -5.4839 20 6 2.9580 -4.7869 -4.6213 21 7 2.7493 -5.0100 -3.1772 22 6 3.8436 -5.0569 -2.3552 23 1 3.8146 -5.6462 -1.4507 24 6 4.9902 -4.3473 -2.6850 25 7 4.9140 -3.3140 -3.4966 26 14 6.6411 -4.8588 -1.9765 27 1 7.7155 -4.0244 -2.5723 28 1 6.8930 -6.2882 -2.2904 29 1 6.6275 -4.6705 -0.5035 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8886 -0.5161 32 1 -0.3633 -0.8914 -0.5115 33 1 4.9392 -2.3643 0.3157 34 1 6.0891 0.5428 0.5663 35 1 7.0133 -1.0207 0.8878 36 1 6.5988 -1.7577 -1.5042 37 1 5.6742 -0.1949 -1.8263 38 1 2.1231 -2.8227 -1.9961 39 1 0.4289 -4.6951 -0.7564 40 1 2.1039 -5.2604 -0.5481 41 1 0.1818 -6.8316 -1.9601 42 1 1.8984 -7.2524 -2.1574 43 1 -0.0191 -6.5658 -4.3588 44 1 0.4707 -8.1984 -3.8869 45 1 1.8741 -7.8082 -5.6860 46 1 2.9061 -7.2783 -4.3354 47 1 1.0550 -5.2648 -5.5272 48 1 2.4679 -5.7519 -6.4919 49 1 2.7404 -3.7445 -4.8535 50 1 4.0008 -4.9915 -4.8639 51 1 4.0486 -2.9999 -3.8019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968955230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:29 Heat of formation + Delta-G solvation = 51.737598 kcal Electronic energy + Delta-G solvation = -33214.752836 eV Core-core repulsion = 29118.149567 eV Total energy + Delta-G solvation = -4096.603269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.94146 -40.80643 -39.66829 -38.34243 -36.09820 -35.62950 -35.46828 -33.46716 -32.64017 -32.23455 -29.81292 -28.66122 -27.47056 -25.70042 -24.96215 -24.57983 -23.57176 -23.29472 -21.78089 -21.21165 -20.77420 -20.50217 -19.32065 -18.80116 -18.39414 -17.52851 -17.23312 -17.04908 -16.67448 -16.14905 -15.72827 -15.65501 -15.48843 -15.27532 -14.75227 -14.53002 -14.33819 -14.32671 -14.28121 -13.94881 -13.76981 -13.55772 -13.44541 -13.08666 -12.89932 -12.69390 -12.61528 -12.46469 -12.40242 -12.19788 -11.95429 -11.92931 -11.67649 -11.47275 -11.42554 -11.41831 -11.35128 -11.02737 -10.98784 -10.95319 -10.23034 -10.17263 -9.94319 -8.67835 -7.94131 -5.15527 0.17821 0.80818 1.37641 1.57875 1.62408 1.66404 1.78622 2.35819 2.69217 2.81229 3.06624 3.15052 3.36930 3.58149 3.64344 3.74851 3.91608 3.95718 3.96164 4.02241 4.17976 4.20500 4.33254 4.38789 4.44116 4.49905 4.53340 4.54689 4.56127 4.66850 4.73296 4.74397 4.90360 4.93661 4.97575 5.03819 5.05041 5.06636 5.15209 5.15425 5.20583 5.26110 5.34955 5.43979 5.50966 5.54904 5.59056 5.69023 6.09960 6.52727 6.68475 7.08428 7.14965 7.31882 7.99934 8.36731 9.26679 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.005040 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.048750 B = 5554.532470 C = 7150.521635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.058 3.942 3 N -0.372 5.372 4 O 0.088 5.912 5 C 0.069 3.931 6 C -0.111 4.111 7 C -0.139 4.139 8 C -0.131 4.131 9 C -0.271 4.271 10 C 0.601 3.399 11 O -0.581 6.581 12 N -0.670 5.670 13 C 0.134 3.866 14 C 0.176 3.824 15 H 0.056 0.944 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.103 4.103 19 C -0.127 4.127 20 C 0.167 3.833 21 N -0.592 5.592 22 C -0.335 4.335 23 H 0.028 0.972 24 C -0.036 4.036 25 N -0.919 5.919 26 Si 1.068 2.932 27 H -0.284 1.284 28 H -0.300 1.300 29 H -0.289 1.289 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.002 0.998 50 H 0.034 0.966 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 2.391 0.717 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 N -0.081 5.081 4 O 0.031 5.969 5 C 0.006 3.994 6 C -0.130 4.130 7 C -0.176 4.176 8 C -0.168 4.168 9 C -0.278 4.278 10 C 0.386 3.614 11 O -0.462 6.462 12 N -0.316 5.316 13 C 0.010 3.990 14 C 0.068 3.932 15 H 0.074 0.926 16 C -0.168 4.168 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.166 4.166 20 C 0.042 3.958 21 N -0.315 5.315 22 C -0.465 4.465 23 H 0.045 0.955 24 C -0.237 4.237 25 N -0.560 5.560 26 Si 0.898 3.102 27 H -0.210 1.210 28 H -0.228 1.228 29 H -0.216 1.216 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.240 0.760 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.020 0.980 50 H 0.053 0.947 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.234 3.613 1.389 6.510 hybrid contribution -1.149 -1.318 -0.232 1.764 sum -6.383 2.295 1.157 6.881 Atomic orbital electron populations 1.20363 0.82739 1.05091 1.04907 1.25199 0.99908 0.85638 0.99685 1.73533 0.89182 1.23563 1.21866 1.84430 1.21626 1.22179 1.68702 1.23721 0.95995 0.83190 0.96497 1.20392 0.84230 0.98091 1.10307 1.23303 0.95484 1.01012 0.97791 1.22880 0.99110 1.03078 0.91770 1.21898 0.93397 0.95371 1.17159 1.16904 0.76478 0.84188 0.83824 1.90724 1.53514 1.69583 1.32404 1.45587 1.64273 1.13733 1.08032 1.21550 0.97651 0.81223 0.98590 1.20532 0.87493 0.94415 0.90722 0.92638 1.21178 1.00484 0.97257 0.97854 1.20268 0.97579 1.00988 0.94893 1.20897 0.98627 0.96335 0.98222 1.21846 0.99976 0.96230 0.98539 1.21036 0.97312 0.94556 0.82902 1.43741 1.01260 1.84654 1.01857 1.19627 0.94841 1.25834 1.06185 0.95450 1.25931 1.03056 0.94264 1.00414 1.70864 1.27723 1.21355 1.36082 0.83465 0.75828 0.75292 0.75583 1.20980 1.22777 1.21553 0.88406 0.88062 0.89508 0.86901 0.86202 0.85841 0.88605 0.88390 0.76045 0.91095 0.93842 0.90823 0.94233 0.91912 0.92022 0.91737 0.94052 0.91904 0.91895 0.97975 0.94697 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 10.49 71.24 0.75 -0.96 16 2 C 0.06 1.88 7.59 45.16 0.34 2.22 16 3 N -0.37 -12.41 12.01 -44.79 -0.54 -12.95 16 4 O 0.09 2.99 10.92 77.05 0.84 3.83 16 5 C 0.07 2.48 6.99 25.48 0.18 2.66 16 6 C -0.11 -3.85 6.15 -11.54 -0.07 -3.92 16 7 C -0.14 -3.67 10.19 30.62 0.31 -3.36 16 8 C -0.13 -4.33 10.24 30.62 0.31 -4.02 16 9 C -0.27 -10.09 6.25 -18.74 -0.12 -10.21 16 10 C 0.60 24.41 7.63 86.66 0.66 25.07 16 11 O -0.58 -26.83 17.11 -4.06 -0.07 -26.90 16 12 N -0.67 -25.86 4.66 -466.38 -2.17 -28.04 16 13 C 0.13 4.93 4.51 86.38 0.39 5.32 16 14 C 0.18 6.11 2.17 45.80 0.10 6.20 16 15 H 0.06 1.81 8.06 -2.38 -0.02 1.79 16 16 C -0.13 -3.88 5.04 29.20 0.15 -3.73 16 17 C -0.10 -2.68 5.15 28.61 0.15 -2.53 16 18 C -0.10 -3.12 5.51 29.76 0.16 -2.95 16 19 C -0.13 -4.00 5.71 30.22 0.17 -3.83 16 20 C 0.17 6.74 4.48 86.49 0.39 7.12 16 21 N -0.59 -24.28 1.66 -675.32 -1.12 -25.40 16 22 C -0.33 -16.03 7.53 84.03 0.63 -15.39 16 23 H 0.03 1.45 6.81 -2.91 -0.02 1.43 16 24 C -0.04 -1.77 4.66 84.86 0.40 -1.37 16 25 N -0.92 -46.32 12.57 21.65 0.27 -46.05 16 26 Si 1.07 47.47 29.21 68.60 2.00 49.47 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 29 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 30 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16 34 H 0.12 2.71 8.07 -2.39 -0.02 2.70 16 35 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 3.53 7.35 -2.39 -0.02 3.52 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.40 16.27 8.12 -92.71 -0.75 15.51 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.87 6.87 -2.38 -0.02 1.85 16 41 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.52 7.36 -2.39 -0.02 1.51 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 47 H 0.06 1.79 7.32 -2.39 -0.02 1.77 16 48 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.00 0.10 7.05 -2.39 -0.02 0.08 16 50 H 0.03 1.64 6.70 -2.39 -0.02 1.63 16 51 H 0.26 13.28 6.06 -92.71 -0.56 12.72 16 Total: -1.00 -57.88 404.63 4.51 -53.37 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.40 Total: 36.34 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.90 Total: -3.67 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.56 Total: -112.43 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.77 Total: -23.07 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.00 Total: 49.47 kcal Total: -57.88 4.51 -53.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968955230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.103 kcal (2) G-P(sol) polarization free energy of solvation -57.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds