Wall clock time and date at job start Wed Apr 1 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.78204 * 2 1 4 4 C 1.54327 * 110.72258 * 123.23819 * 2 1 3 5 5 N 1.47021 * 107.40146 * 96.24470 * 4 2 1 6 6 C 1.36935 * 125.64542 * 178.90402 * 5 4 2 7 7 H 1.07998 * 120.00239 * 349.93880 * 6 5 4 8 8 C 1.38810 * 119.99952 * 169.94871 * 6 5 4 9 9 N 1.31625 * 120.00077 * 350.41594 * 8 6 5 10 10 Si 1.86803 * 120.00274 * 170.41859 * 8 6 5 11 11 H 1.48495 * 109.47346 * 94.13589 * 10 8 6 12 12 H 1.48496 * 109.47417 * 214.13970 * 10 8 6 13 13 H 1.48498 * 109.46994 * 334.13857 * 10 8 6 14 14 C 1.47420 * 108.70266 * 358.86765 * 5 4 2 15 15 C 1.54907 * 104.83467 * 24.12769 * 14 5 4 16 16 H 1.08998 * 111.00373 * 204.91173 * 15 14 5 17 17 N 1.46498 * 111.00540 * 81.10195 * 15 14 5 18 18 C 1.34777 * 120.00171 * 86.45439 * 17 15 14 19 19 O 1.21610 * 119.99725 * 359.97438 * 18 17 15 20 20 C 1.47395 * 120.00069 * 180.02562 * 18 17 15 21 21 C 1.37367 * 128.56457 * 359.67549 * 20 18 17 22 22 O 1.33491 * 106.33822 * 179.86016 * 21 20 18 23 23 N 1.20660 * 113.16267 * 0.44990 * 22 21 20 24 24 C 1.30017 * 112.29433 * 359.71683 * 23 22 21 25 25 C 1.50702 * 127.32969 * 179.97438 * 24 23 22 26 26 C 1.54263 * 110.03425 * 57.21243 * 25 24 23 27 27 C 1.54893 * 104.19567 * 217.10107 * 26 25 24 28 28 C 1.54899 * 102.74571 * 37.94450 * 27 26 25 29 29 C 1.53878 * 110.03461 * 300.04181 * 25 24 23 30 30 H 1.08996 * 109.46763 * 298.21700 * 1 2 3 31 31 H 1.09000 * 109.46958 * 58.21687 * 1 2 3 32 32 H 1.09001 * 109.46992 * 178.21259 * 1 2 3 33 33 H 1.09001 * 109.47638 * 181.78612 * 3 2 1 34 34 H 1.09002 * 109.47110 * 301.78119 * 3 2 1 35 35 H 1.08996 * 109.47225 * 61.78208 * 3 2 1 36 36 H 1.09005 * 109.87744 * 336.75461 * 4 2 1 37 37 H 1.08991 * 109.88624 * 215.74710 * 4 2 1 38 38 H 0.96996 * 119.99640 * 180.02562 * 9 8 6 39 39 H 1.09000 * 110.36795 * 142.96720 * 14 5 4 40 40 H 1.08997 * 110.36592 * 265.17817 * 14 5 4 41 41 H 0.97002 * 120.00154 * 266.45544 * 17 15 14 42 42 H 1.07998 * 126.83020 * 359.97438 * 21 20 18 43 43 H 1.09001 * 110.01533 * 178.65651 * 25 24 23 44 44 H 1.09001 * 110.48570 * 335.78091 * 26 25 24 45 45 H 1.09001 * 110.48597 * 98.42801 * 26 25 24 46 46 H 1.08995 * 110.75899 * 279.62808 * 27 26 25 47 47 H 1.09004 * 110.75510 * 156.25327 * 27 26 25 48 48 H 1.09000 * 110.48256 * 203.37815 * 28 27 26 49 49 H 1.08996 * 110.59919 * 80.78798 * 28 27 26 50 50 H 1.08998 * 110.03390 * 238.57832 * 29 25 24 51 51 H 1.09003 * 110.02959 * 359.95714 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 2.3744 -2.1534 0.7417 6 6 2.8979 -3.1614 1.5065 7 1 3.2778 -2.9480 2.4946 8 6 2.9405 -4.4576 1.0116 9 7 2.3125 -4.7564 -0.1060 10 14 3.8888 -5.7781 1.9317 11 1 2.9662 -6.5119 2.8347 12 1 4.4874 -6.7266 0.9585 13 1 4.9669 -5.1454 2.7334 14 6 2.0157 -2.2546 -0.6846 15 6 2.0792 -0.8001 -1.2137 16 1 1.4397 -0.6739 -2.0874 17 7 3.4589 -0.4110 -1.5159 18 6 3.9881 -0.6880 -2.7241 19 8 3.3204 -1.2615 -3.5632 20 6 5.3763 -0.2970 -3.0278 21 6 6.2781 0.3550 -2.2224 22 8 7.3983 0.4804 -2.9376 23 7 7.3077 0.0144 -4.0469 24 6 6.1361 -0.5029 -4.2705 25 6 5.6580 -1.1707 -5.5341 26 6 6.5843 -2.3515 -5.8908 27 6 6.6657 -2.3167 -7.4372 28 6 6.6988 -0.7986 -7.7436 29 6 5.7307 -0.1834 -6.7121 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0321 33 1 3.1621 1.4058 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3263 -0.8255 1.9977 37 1 2.9853 -0.3191 1.5793 38 1 2.3420 -5.6622 -0.4515 39 1 2.7337 -2.8821 -1.2128 40 1 1.0086 -2.6566 -0.7949 41 1 3.9916 0.0461 -0.8464 42 1 6.1141 0.6965 -1.2111 43 1 4.6347 -1.5235 -5.4054 44 1 7.5722 -2.2070 -5.4534 45 1 6.1502 -3.2925 -5.5528 46 1 5.7852 -2.7812 -7.8810 47 1 7.5773 -2.8013 -7.7871 48 1 6.3484 -0.6065 -8.7577 49 1 7.7047 -0.4017 -7.6069 50 1 4.7430 -0.0577 -7.1555 51 1 6.1112 0.7790 -6.3697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974662253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:23 Heat of formation + Delta-G solvation = 34.884069 kcal Electronic energy + Delta-G solvation = -32068.087078 eV Core-core repulsion = 27970.752984 eV Total energy + Delta-G solvation = -4097.334093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.88645 -39.76008 -38.38098 -37.78745 -33.92772 -33.66334 -33.20551 -31.81423 -30.76404 -28.83668 -28.77303 -28.18424 -26.92932 -25.67584 -24.69766 -23.12298 -22.52448 -20.89503 -20.67851 -20.03461 -19.52765 -18.95301 -17.89747 -17.61991 -16.74974 -16.52359 -15.91703 -15.73538 -15.23055 -14.78267 -14.49630 -14.15750 -13.96244 -13.82931 -13.53751 -13.42989 -13.35626 -13.24114 -12.70985 -12.20958 -12.01534 -11.92136 -11.87274 -11.74528 -11.40747 -11.33579 -11.25694 -11.17270 -11.10092 -10.93122 -10.80550 -10.73067 -10.63529 -10.44483 -10.25295 -10.04551 -9.94830 -9.80744 -9.75380 -9.69548 -9.64697 -8.61613 -8.51973 -6.81271 -5.75458 -3.08992 1.12811 1.83100 2.94912 3.37855 3.41566 3.43676 3.45847 3.54892 4.00276 4.24263 4.47160 4.57282 4.62342 4.83202 4.88089 4.93921 5.12736 5.17424 5.21418 5.30732 5.36495 5.44920 5.47609 5.51086 5.57644 5.58535 5.64205 5.70799 5.75468 5.81132 5.81297 5.92209 5.95396 6.05049 6.07067 6.11644 6.14656 6.17565 6.23183 6.33364 6.39628 6.46297 6.53258 6.63603 6.66576 6.90461 7.48065 7.53152 7.76057 7.84912 8.21527 8.24697 8.51914 9.16804 9.79512 10.45940 11.36736 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003581 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.838870 B = 7817.714191 C = 9093.290634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.233 4.233 7 H 0.075 0.925 8 C -0.003 4.003 9 N -0.913 5.913 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.695 5.695 18 C 0.592 3.408 19 O -0.529 6.529 20 C -0.241 4.241 21 C -0.014 4.014 22 O 0.094 5.906 23 N -0.359 5.359 24 C 0.081 3.919 25 C -0.023 4.023 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.112 4.112 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.394 0.606 42 H 0.223 0.777 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 13.630 -8.535 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.361 4.361 7 H 0.093 0.907 8 C -0.200 4.200 9 N -0.559 5.559 10 Si 0.737 3.263 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.043 3.957 15 C 0.019 3.981 16 H 0.107 0.893 17 N -0.345 5.345 18 C 0.378 3.622 19 O -0.407 6.407 20 C -0.248 4.248 21 C -0.096 4.096 22 O 0.034 5.966 23 N -0.065 5.065 24 C -0.082 4.082 25 C -0.042 4.042 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.160 4.160 29 C -0.151 4.151 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.229 0.771 42 H 0.240 0.760 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.054 13.126 -9.829 17.480 hybrid contribution -0.047 -0.741 1.480 1.656 sum 6.008 12.386 -8.349 16.100 Atomic orbital electron populations 1.21694 0.93335 1.02680 1.00975 1.21865 0.96196 0.94442 0.96148 1.21722 1.00152 0.95486 1.01531 1.21411 0.96413 0.86949 0.93614 1.44430 1.74585 1.06879 1.06673 1.18950 1.32463 0.86352 0.98383 0.90732 1.24809 1.00327 0.96946 0.97954 1.69942 1.44937 1.19032 1.22006 0.86193 0.79604 0.81836 0.78629 1.21592 1.21657 1.20661 1.21767 0.99938 0.89412 0.84576 1.22633 0.80659 0.98242 0.96526 0.89307 1.45684 1.15329 1.59651 1.13876 1.16742 0.83843 0.79076 0.82560 1.90763 1.61109 1.41452 1.47364 1.22507 0.97989 1.08819 0.95488 1.26368 0.85520 0.98500 0.99214 1.84557 1.34447 1.59097 1.18491 1.73590 1.20411 1.14532 0.97964 1.24740 0.88477 0.98399 0.96576 1.20495 1.01861 0.94360 0.87511 1.22449 0.99339 0.97598 0.96034 1.22488 1.01841 0.96253 0.95439 1.22353 0.99569 0.95587 0.98479 1.22178 1.00112 0.98100 0.94682 0.92571 0.93053 0.91568 0.93138 0.92711 0.92492 0.95747 0.96143 0.93626 0.90679 0.94593 0.77080 0.76034 0.86533 0.91310 0.90862 0.91124 0.91463 0.91634 0.91620 0.91049 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.44 37.16 0.31 -1.54 16 2 C -0.09 -1.31 0.81 -152.54 -0.12 -1.44 16 3 C -0.13 -1.54 8.17 37.16 0.30 -1.24 16 4 C 0.14 2.69 6.40 -3.06 -0.02 2.67 16 5 N -0.60 -14.43 3.39 -170.08 -0.58 -15.00 16 6 C -0.23 -6.30 10.24 -15.06 -0.15 -6.45 16 7 H 0.07 1.96 7.85 -52.49 -0.41 1.54 16 8 C 0.00 -0.09 5.40 -17.43 -0.09 -0.18 16 9 N -0.91 -26.80 10.68 55.49 0.59 -26.21 16 10 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.17 3.98 4.80 -2.53 -0.01 3.97 16 15 C 0.12 2.24 2.57 -65.65 -0.17 2.07 16 16 H 0.09 1.63 7.63 -51.93 -0.40 1.23 16 17 N -0.70 -11.16 4.67 -52.68 -0.25 -11.41 16 18 C 0.59 10.28 7.81 -12.53 -0.10 10.18 16 19 O -0.53 -10.87 15.02 5.27 0.08 -10.79 16 20 C -0.24 -3.56 6.47 -102.89 -0.67 -4.22 16 21 C -0.01 -0.15 11.85 30.42 0.36 0.21 16 22 O 0.09 1.17 11.06 18.66 0.21 1.38 16 23 N -0.36 -5.11 11.83 34.78 0.41 -4.69 16 24 C 0.08 1.19 5.79 -79.77 -0.46 0.73 16 25 C -0.02 -0.32 3.37 -90.65 -0.31 -0.62 16 26 C -0.12 -1.47 6.35 -25.07 -0.16 -1.63 16 27 C -0.12 -1.26 6.91 -24.73 -0.17 -1.43 16 28 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 29 C -0.11 -1.30 6.45 -25.61 -0.17 -1.47 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.10 7.46 -51.93 -0.39 0.71 16 33 H 0.05 0.54 6.21 -51.93 -0.32 0.22 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 37 H 0.02 0.37 7.82 -51.93 -0.41 -0.03 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 2.08 6.94 -51.93 -0.36 1.72 16 40 H 0.04 0.94 7.66 -51.93 -0.40 0.54 16 41 H 0.39 5.34 6.00 -40.82 -0.24 5.09 16 42 H 0.22 1.53 7.68 -52.49 -0.40 1.12 16 43 H 0.12 1.84 6.34 -51.93 -0.33 1.51 16 44 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -32.38 400.72 -8.54 -40.92 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.23 Total: 4.58 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.79 Total: -1.78 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.18 Total: -57.31 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.29 Total: -9.41 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.38 -8.54 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds