Wall clock time and date at job start Wed Apr 1 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.78204 * 2 1 4 4 C 1.54327 * 110.72258 * 123.23819 * 2 1 3 5 5 N 1.47021 * 107.40146 * 96.24470 * 4 2 1 6 6 C 1.36935 * 125.64542 * 178.90402 * 5 4 2 7 7 H 1.07998 * 120.00239 * 349.93880 * 6 5 4 8 8 C 1.38810 * 119.99952 * 169.94871 * 6 5 4 9 9 N 1.31625 * 120.00077 * 350.41594 * 8 6 5 10 10 Si 1.86803 * 120.00274 * 170.41859 * 8 6 5 11 11 H 1.48495 * 109.47346 * 94.13589 * 10 8 6 12 12 H 1.48496 * 109.47417 * 214.13970 * 10 8 6 13 13 H 1.48498 * 109.46994 * 334.13857 * 10 8 6 14 14 C 1.47420 * 108.70266 * 358.86765 * 5 4 2 15 15 C 1.54907 * 104.83467 * 24.12769 * 14 5 4 16 16 H 1.08998 * 111.00373 * 204.91173 * 15 14 5 17 17 N 1.46498 * 111.00540 * 81.10195 * 15 14 5 18 18 C 1.34777 * 120.00171 * 86.45439 * 17 15 14 19 19 O 1.21610 * 119.99725 * 359.97438 * 18 17 15 20 20 C 1.47395 * 120.00069 * 180.02562 * 18 17 15 21 21 C 1.37367 * 128.56457 * 359.67549 * 20 18 17 22 22 O 1.33491 * 106.33822 * 179.86016 * 21 20 18 23 23 N 1.20660 * 113.16267 * 0.44990 * 22 21 20 24 24 C 1.30017 * 112.29433 * 359.71683 * 23 22 21 25 25 C 1.50702 * 127.32969 * 179.97438 * 24 23 22 26 26 C 1.54263 * 110.03425 * 57.21243 * 25 24 23 27 27 C 1.54893 * 104.19567 * 217.10107 * 26 25 24 28 28 C 1.54899 * 102.74571 * 37.94450 * 27 26 25 29 29 C 1.53878 * 110.03461 * 300.04181 * 25 24 23 30 30 H 1.08996 * 109.46763 * 298.21700 * 1 2 3 31 31 H 1.09000 * 109.46958 * 58.21687 * 1 2 3 32 32 H 1.09001 * 109.46992 * 178.21259 * 1 2 3 33 33 H 1.09001 * 109.47638 * 181.78612 * 3 2 1 34 34 H 1.09002 * 109.47110 * 301.78119 * 3 2 1 35 35 H 1.08996 * 109.47225 * 61.78208 * 3 2 1 36 36 H 1.09005 * 109.87744 * 336.75461 * 4 2 1 37 37 H 1.08991 * 109.88624 * 215.74710 * 4 2 1 38 38 H 0.96996 * 119.99640 * 180.02562 * 9 8 6 39 39 H 1.09000 * 110.36795 * 142.96720 * 14 5 4 40 40 H 1.08997 * 110.36592 * 265.17817 * 14 5 4 41 41 H 0.97002 * 120.00154 * 266.45544 * 17 15 14 42 42 H 1.07998 * 126.83020 * 359.97438 * 21 20 18 43 43 H 1.09001 * 110.01533 * 178.65651 * 25 24 23 44 44 H 1.09001 * 110.48570 * 335.78091 * 26 25 24 45 45 H 1.09001 * 110.48597 * 98.42801 * 26 25 24 46 46 H 1.08995 * 110.75899 * 279.62808 * 27 26 25 47 47 H 1.09004 * 110.75510 * 156.25327 * 27 26 25 48 48 H 1.09000 * 110.48256 * 203.37815 * 28 27 26 49 49 H 1.08996 * 110.59919 * 80.78798 * 28 27 26 50 50 H 1.08998 * 110.03390 * 238.57832 * 29 25 24 51 51 H 1.09003 * 110.02959 * 359.95714 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 2.3744 -2.1534 0.7417 6 6 2.8979 -3.1614 1.5065 7 1 3.2778 -2.9480 2.4946 8 6 2.9405 -4.4576 1.0116 9 7 2.3125 -4.7564 -0.1060 10 14 3.8888 -5.7781 1.9317 11 1 2.9662 -6.5119 2.8347 12 1 4.4874 -6.7266 0.9585 13 1 4.9669 -5.1454 2.7334 14 6 2.0157 -2.2546 -0.6846 15 6 2.0792 -0.8001 -1.2137 16 1 1.4397 -0.6739 -2.0874 17 7 3.4589 -0.4110 -1.5159 18 6 3.9881 -0.6880 -2.7241 19 8 3.3204 -1.2615 -3.5632 20 6 5.3763 -0.2970 -3.0278 21 6 6.2781 0.3550 -2.2224 22 8 7.3983 0.4804 -2.9376 23 7 7.3077 0.0144 -4.0469 24 6 6.1361 -0.5029 -4.2705 25 6 5.6580 -1.1707 -5.5341 26 6 6.5843 -2.3515 -5.8908 27 6 6.6657 -2.3167 -7.4372 28 6 6.6988 -0.7986 -7.7436 29 6 5.7307 -0.1834 -6.7121 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0321 33 1 3.1621 1.4058 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3263 -0.8255 1.9977 37 1 2.9853 -0.3191 1.5793 38 1 2.3420 -5.6622 -0.4515 39 1 2.7337 -2.8821 -1.2128 40 1 1.0086 -2.6566 -0.7949 41 1 3.9916 0.0461 -0.8464 42 1 6.1141 0.6965 -1.2111 43 1 4.6347 -1.5235 -5.4054 44 1 7.5722 -2.2070 -5.4534 45 1 6.1502 -3.2925 -5.5528 46 1 5.7852 -2.7812 -7.8810 47 1 7.5773 -2.8013 -7.7871 48 1 6.3484 -0.6065 -8.7577 49 1 7.7047 -0.4017 -7.6069 50 1 4.7430 -0.0577 -7.1555 51 1 6.1112 0.7790 -6.3697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974662253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:22 Heat of formation + Delta-G solvation = 15.114130 kcal Electronic energy + Delta-G solvation = -32068.944366 eV Core-core repulsion = 27970.752984 eV Total energy + Delta-G solvation = -4098.191382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.96902 -41.20050 -39.53197 -39.07375 -35.68783 -34.86184 -34.51496 -32.93238 -32.63101 -30.00688 -29.71009 -29.59268 -28.06857 -27.43264 -26.03194 -24.65948 -23.54091 -22.45042 -21.65681 -21.44929 -20.59164 -20.27951 -19.09404 -18.69859 -18.65532 -17.72508 -17.36560 -16.72791 -16.67369 -16.29514 -15.85269 -15.68806 -15.45400 -15.21143 -14.70519 -14.54529 -14.46937 -14.35452 -14.09970 -13.71731 -13.60030 -13.18612 -13.05785 -12.93373 -12.81986 -12.78516 -12.64754 -12.56323 -12.20433 -12.11439 -12.08652 -12.00979 -11.81395 -11.79714 -11.67599 -11.54968 -11.52684 -11.33880 -11.05704 -10.89572 -10.76009 -10.68689 -10.01962 -8.82043 -7.86916 -5.21273 0.08208 0.71301 1.43084 1.44383 1.53398 1.86226 2.17655 2.31216 2.48201 2.92699 3.20765 3.33176 3.54630 3.64384 3.64774 3.69221 3.87864 3.91074 3.96472 4.03195 4.08737 4.39779 4.41192 4.42061 4.50086 4.50781 4.52889 4.63456 4.74434 4.75311 4.82445 4.85507 4.91026 4.93450 4.96479 4.98900 5.05024 5.12559 5.16335 5.19589 5.21174 5.29010 5.34372 5.37409 5.40888 5.48849 5.55994 5.68044 5.71686 6.20391 6.52792 7.07238 7.17645 7.21295 7.78259 8.44020 9.23970 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003581 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.838870 B = 7817.714191 C = 9093.290634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.126 4.126 4 C 0.136 3.864 5 N -0.616 5.616 6 C -0.235 4.235 7 H 0.085 0.915 8 C -0.065 4.065 9 N -0.949 5.949 10 Si 0.969 3.031 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.263 1.263 14 C 0.182 3.818 15 C 0.139 3.861 16 H 0.083 0.917 17 N -0.684 5.684 18 C 0.591 3.409 19 O -0.573 6.573 20 C -0.280 4.280 21 C 0.028 3.972 22 O 0.102 5.898 23 N -0.368 5.368 24 C 0.068 3.932 25 C -0.028 4.028 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.108 4.108 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.043 0.957 38 H 0.243 0.757 39 H 0.024 0.976 40 H -0.004 1.004 41 H 0.410 0.590 42 H 0.273 0.727 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 16.797 -7.387 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.183 4.183 4 C 0.011 3.989 5 N -0.342 5.342 6 C -0.364 4.364 7 H 0.103 0.897 8 C -0.258 4.258 9 N -0.598 5.598 10 Si 0.798 3.202 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.188 1.188 14 C 0.055 3.945 15 C 0.033 3.967 16 H 0.101 0.899 17 N -0.335 5.335 18 C 0.379 3.621 19 O -0.453 6.453 20 C -0.287 4.287 21 C -0.054 4.054 22 O 0.043 5.957 23 N -0.074 5.074 24 C -0.095 4.095 25 C -0.048 4.048 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.013 0.987 41 H 0.248 0.752 42 H 0.288 0.712 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.672 16.356 -8.638 20.024 hybrid contribution -0.568 -1.708 1.206 2.166 sum 7.104 14.648 -7.432 17.896 Atomic orbital electron populations 1.21710 0.92644 1.01119 1.03151 1.21850 0.96741 0.96140 0.92377 1.21716 1.01029 0.92216 1.03359 1.21686 0.97399 0.84745 0.95032 1.44666 1.74303 1.08457 1.06789 1.19389 1.31187 0.87118 0.98726 0.89738 1.25612 1.01893 0.99314 0.98991 1.70184 1.47015 1.18627 1.23946 0.85198 0.78636 0.79090 0.77249 1.21405 1.22923 1.18769 1.21375 0.96073 0.92290 0.84733 1.22251 0.82020 0.95112 0.97325 0.89897 1.45487 1.14700 1.59306 1.13979 1.17109 0.84652 0.78088 0.82285 1.90744 1.62480 1.43349 1.48745 1.22308 0.97473 1.12060 0.96902 1.27141 0.83506 0.94940 0.99804 1.84548 1.34674 1.58412 1.18100 1.73587 1.20041 1.15031 0.98777 1.24925 0.88848 0.98665 0.97046 1.20484 1.00419 0.95349 0.88525 1.22438 0.98477 0.96482 0.98130 1.22493 1.02807 0.96946 0.93268 1.22337 0.99234 0.94823 0.98922 1.22158 1.00899 0.97341 0.94252 0.90329 0.90935 0.95040 0.91668 0.91328 0.90305 0.95945 0.93860 0.94766 0.95752 0.98664 0.75233 0.71200 0.89359 0.91906 0.92426 0.90726 0.89942 0.89604 0.91385 0.90684 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.44 71.98 0.61 -2.87 16 2 C -0.07 -2.00 0.81 -50.91 -0.04 -2.04 16 3 C -0.13 -2.36 8.17 71.98 0.59 -1.77 16 4 C 0.14 4.90 6.40 86.73 0.56 5.46 16 5 N -0.62 -30.01 3.39 -692.01 -2.35 -32.36 16 6 C -0.23 -12.80 10.24 84.03 0.86 -11.94 16 7 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 8 C -0.06 -3.71 5.40 84.86 0.46 -3.25 16 9 N -0.95 -58.92 10.68 21.65 0.23 -58.69 16 10 Si 0.97 46.16 29.56 68.60 2.03 48.19 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.18 9.04 4.80 86.86 0.42 9.46 16 15 C 0.14 5.02 2.57 46.47 0.12 5.14 16 16 H 0.08 3.12 7.63 -2.39 -0.02 3.11 16 17 N -0.68 -21.31 4.67 -438.84 -2.05 -23.36 16 18 C 0.59 20.80 7.81 86.65 0.68 21.48 16 19 O -0.57 -24.96 15.02 -4.06 -0.06 -25.02 16 20 C -0.28 -8.08 6.47 -18.74 -0.12 -8.20 16 21 C 0.03 0.55 11.85 67.61 0.80 1.35 16 22 O 0.10 2.29 11.06 77.00 0.85 3.15 16 23 N -0.37 -10.08 11.83 -44.79 -0.53 -10.61 16 24 C 0.07 2.01 5.79 45.16 0.26 2.27 16 25 C -0.03 -0.82 3.37 -10.81 -0.04 -0.85 16 26 C -0.12 -3.08 6.35 31.67 0.20 -2.88 16 27 C -0.12 -2.35 6.91 31.89 0.22 -2.13 16 28 C -0.12 -2.15 6.83 31.67 0.22 -1.94 16 29 C -0.11 -2.49 6.45 31.32 0.20 -2.29 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.05 7.46 -2.39 -0.02 1.04 16 33 H 0.06 1.04 6.21 -2.39 -0.01 1.03 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.02 0.83 7.84 -2.38 -0.02 0.82 16 37 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 38 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.02 1.44 6.94 -2.39 -0.02 1.42 16 40 H 0.00 -0.25 7.66 -2.39 -0.02 -0.27 16 41 H 0.41 9.85 6.00 -92.71 -0.56 9.29 16 42 H 0.27 2.23 7.68 -2.91 -0.02 2.21 16 43 H 0.09 3.03 6.34 -2.39 -0.02 3.02 16 44 H 0.06 1.70 7.70 -2.39 -0.02 1.68 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 51 H 0.06 1.40 7.67 -2.39 -0.02 1.38 16 Total: -1.00 -77.19 400.72 4.49 -72.71 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.38 Total: 21.02 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.99 Total: 4.98 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -4.70 Total: -125.02 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.79 Total: -21.87 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -77.19 4.49 -72.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.821 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds