Wall clock time and date at job start Wed Apr 1 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 110.78075 * 2 1 4 4 C 1.54319 * 110.72418 * 123.23630 * 2 1 3 5 5 N 1.47027 * 107.27180 * 96.17122 * 4 2 1 6 6 C 1.36932 * 125.64936 * 178.97736 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94493 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.94433 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70098 * 358.94276 * 5 4 2 15 15 C 1.54908 * 104.83177 * 24.12894 * 14 5 4 16 16 H 1.09004 * 111.00237 * 204.87878 * 15 14 5 17 17 N 1.46502 * 111.00691 * 81.06153 * 15 14 5 18 18 C 1.34775 * 119.99597 * 86.45055 * 17 15 14 19 19 O 1.21616 * 120.00548 * 0.02562 * 18 17 15 20 20 C 1.47423 * 120.00048 * 180.02562 * 18 17 15 21 21 C 1.36092 * 126.45020 * 180.02562 * 20 18 17 22 22 O 1.34261 * 106.94914 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22519 * 359.97438 * 22 21 20 24 24 C 1.50697 * 125.37420 * 179.97438 * 23 22 21 25 25 C 1.54271 * 110.03405 * 57.19724 * 24 23 22 26 26 C 1.54889 * 104.19541 * 217.10530 * 25 24 23 27 27 C 1.54893 * 102.74956 * 37.93720 * 26 25 24 28 28 C 1.53875 * 110.03580 * 300.02582 * 24 23 22 29 29 N 1.29937 * 109.24397 * 359.74774 * 23 22 21 30 30 H 1.09003 * 109.46885 * 298.21210 * 1 2 3 31 31 H 1.08995 * 109.47521 * 58.21298 * 1 2 3 32 32 H 1.09000 * 109.47016 * 178.21677 * 1 2 3 33 33 H 1.08999 * 109.47383 * 181.78587 * 3 2 1 34 34 H 1.09001 * 109.46474 * 301.78804 * 3 2 1 35 35 H 1.09006 * 109.46903 * 61.78203 * 3 2 1 36 36 H 1.09006 * 109.88014 * 336.75529 * 4 2 1 37 37 H 1.09001 * 109.88668 * 215.59287 * 4 2 1 38 38 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.36669 * 142.96708 * 14 5 4 40 40 H 1.08999 * 110.36708 * 265.18354 * 14 5 4 41 41 H 0.96994 * 120.00509 * 266.45405 * 17 15 14 42 42 H 1.08000 * 126.52418 * 359.94812 * 21 20 18 43 43 H 1.09003 * 110.01366 * 178.63902 * 24 23 22 44 44 H 1.09004 * 110.48332 * 335.78112 * 25 24 23 45 45 H 1.08995 * 110.48851 * 98.42053 * 25 24 23 46 46 H 1.09007 * 110.75262 * 279.62659 * 26 25 24 47 47 H 1.08998 * 110.75824 * 156.25907 * 26 25 24 48 48 H 1.08995 * 110.48457 * 203.38197 * 27 26 25 49 49 H 1.08995 * 110.59418 * 80.79567 * 27 26 25 50 50 H 1.08998 * 110.03331 * 238.56895 * 28 24 23 51 51 H 1.08998 * 110.02821 * 359.95306 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 2.3717 -2.1531 0.7390 6 6 2.8934 -3.1636 1.5018 7 1 3.2738 -2.9527 2.4904 8 6 2.9332 -4.4590 1.0044 9 7 2.3046 -4.7542 -0.1136 10 14 3.8791 -5.7830 1.9219 11 1 2.9550 -6.5167 2.8235 12 1 4.4757 -6.7308 0.9468 13 1 4.9585 -5.1540 2.7247 14 6 2.0127 -2.2509 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 1.4401 -0.6664 -2.0875 17 7 3.4595 -0.4081 -1.5144 18 6 3.9887 -0.6838 -2.7228 19 8 3.3203 -1.2538 -3.5639 20 6 5.3781 -0.2946 -3.0253 21 6 6.0407 -0.5062 -4.1950 22 8 7.2740 0.0025 -4.0439 23 6 7.3673 0.5159 -2.8090 24 6 8.5883 1.1847 -2.2323 25 6 9.0094 2.3733 -3.1211 26 6 10.5576 2.3443 -3.0856 27 6 10.8717 0.8277 -3.1054 28 6 9.7724 0.2021 -2.2222 29 7 6.2371 0.3500 -2.1897 30 1 -0.3633 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4059 -0.0320 34 1 1.6955 1.9622 -0.8736 35 1 1.7474 1.9426 0.9056 36 1 1.3263 -0.8254 1.9977 37 1 2.9868 -0.3205 1.5776 38 1 2.3321 -5.6595 -0.4610 39 1 2.7294 -2.8787 -1.2169 40 1 1.0047 -2.6506 -0.7985 41 1 3.9926 0.0468 -0.8439 42 1 5.6491 -0.9914 -5.0769 43 1 8.3811 1.5300 -1.2193 44 1 8.6485 2.2341 -4.1402 45 1 8.6357 3.3100 -2.7077 46 1 10.9316 2.8043 -2.1708 47 1 10.9735 2.8365 -3.9647 48 1 11.8571 0.6367 -2.6805 49 1 10.8131 0.4373 -4.1213 50 1 10.1405 0.0713 -1.2046 51 1 9.4637 -0.7588 -2.6338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977399196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:17 Heat of formation + Delta-G solvation = -2.916624 kcal Electronic energy + Delta-G solvation = -31589.789842 eV Core-core repulsion = 27490.816588 eV Total energy + Delta-G solvation = -4098.973254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.44814 -39.61765 -38.40466 -37.78451 -34.83250 -33.75785 -32.91169 -31.42371 -30.68076 -29.10222 -28.46107 -27.98469 -26.81953 -25.58398 -24.31444 -22.91119 -22.53998 -21.14112 -20.90696 -20.08195 -19.60665 -18.67085 -17.74309 -16.84909 -16.66049 -16.52680 -15.97275 -15.77561 -15.57214 -14.70713 -14.27725 -14.13519 -14.04768 -13.78637 -13.71850 -13.68381 -13.43207 -13.14722 -12.59445 -12.14582 -12.11004 -11.91689 -11.86708 -11.73510 -11.49775 -11.46348 -11.33585 -11.25064 -11.14621 -11.08799 -10.93449 -10.86090 -10.79295 -10.73892 -10.36100 -10.17820 -9.96237 -9.86307 -9.72284 -9.64240 -8.98603 -8.54220 -8.36692 -6.72827 -5.68155 -3.00877 1.18561 2.08520 2.51651 3.42233 3.43166 3.47984 3.50240 3.66368 3.81187 4.18782 4.22288 4.53702 4.56823 4.88940 4.95503 5.01238 5.03369 5.08822 5.12780 5.22347 5.28444 5.28513 5.33499 5.49291 5.50620 5.55637 5.56251 5.65599 5.67250 5.73580 5.80481 5.82622 5.91047 5.92263 5.96602 6.04295 6.09226 6.15039 6.22417 6.31640 6.43507 6.55438 6.63644 6.74611 6.79035 7.01597 7.46244 7.57465 7.62060 7.84737 8.04200 8.32327 8.62947 9.24319 9.87077 10.54287 11.44280 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003223 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.095370 B = 8685.454344 C = 9998.581952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.229 4.229 7 H 0.075 0.925 8 C -0.006 4.006 9 N -0.914 5.914 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.170 3.830 15 C 0.121 3.879 16 H 0.088 0.912 17 N -0.682 5.682 18 C 0.597 3.403 19 O -0.541 6.541 20 C -0.059 4.059 21 C 0.002 3.998 22 O -0.196 6.196 23 C 0.200 3.800 24 C 0.004 3.996 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.121 4.121 29 N -0.456 5.456 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.405 0.595 42 H 0.230 0.770 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.614 16.844 -7.128 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.325 5.325 6 C -0.357 4.357 7 H 0.092 0.908 8 C -0.203 4.203 9 N -0.561 5.561 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.044 3.956 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.332 5.332 18 C 0.382 3.618 19 O -0.419 6.419 20 C -0.179 4.179 21 C -0.071 4.071 22 O -0.082 6.082 23 C -0.009 4.009 24 C -0.015 4.015 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.160 4.160 29 N -0.185 5.185 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.242 0.758 42 H 0.246 0.754 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.097 0.903 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.023 16.398 -7.100 21.537 hybrid contribution 0.679 -1.023 0.157 1.237 sum 12.701 15.376 -6.944 21.117 Atomic orbital electron populations 1.21691 0.93382 1.02608 1.00917 1.21815 0.96086 0.94564 0.96144 1.21735 1.00613 0.95361 1.01295 1.21420 0.96460 0.86864 0.93603 1.44418 1.74635 1.06836 1.06653 1.18965 1.32169 0.86270 0.98303 0.90757 1.24805 1.00492 0.96950 0.98016 1.69944 1.45154 1.19006 1.22011 0.86176 0.79614 0.81831 0.78577 1.21642 1.21716 1.20689 1.21761 0.99835 0.89398 0.84628 1.22610 0.80929 0.98351 0.96532 0.89404 1.45665 1.14887 1.58540 1.14101 1.16670 0.83274 0.78985 0.82897 1.90811 1.60680 1.42574 1.47806 1.21963 0.97421 1.06041 0.92498 1.25259 0.81441 0.99198 1.01231 1.84332 1.32270 1.57469 1.34147 1.26142 0.96612 0.98240 0.79943 1.20455 0.86712 0.94346 0.99997 1.22496 0.96330 0.97004 0.99980 1.22503 0.94824 0.96490 1.02256 1.22380 0.98361 0.95263 1.00190 1.22260 0.93856 0.98415 1.01440 1.70800 1.00548 1.15883 1.31309 0.92598 0.93099 0.91593 0.92740 0.92862 0.92600 0.95716 0.96005 0.93723 0.90796 0.94563 0.75805 0.75389 0.86500 0.90823 0.90501 0.90959 0.91080 0.91174 0.91311 0.90262 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.44 37.16 0.31 -1.69 16 2 C -0.09 -1.46 0.81 -152.67 -0.12 -1.59 16 3 C -0.13 -1.86 8.16 37.16 0.30 -1.56 16 4 C 0.14 2.96 6.41 -3.06 -0.02 2.94 16 5 N -0.60 -15.42 3.39 -170.07 -0.58 -15.99 16 6 C -0.23 -6.49 10.24 -15.06 -0.15 -6.65 16 7 H 0.07 2.05 7.85 -52.48 -0.41 1.64 16 8 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 9 N -0.91 -27.74 10.68 55.49 0.59 -27.15 16 10 Si 0.91 22.71 29.56 -169.99 -5.03 17.69 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.17 4.26 4.80 -2.53 -0.01 4.25 16 15 C 0.12 2.41 2.56 -65.78 -0.17 2.24 16 16 H 0.09 1.75 7.63 -51.93 -0.40 1.35 16 17 N -0.68 -13.03 4.67 -52.80 -0.25 -13.28 16 18 C 0.60 11.68 7.81 -12.52 -0.10 11.58 16 19 O -0.54 -11.86 16.63 5.26 0.09 -11.77 16 20 C -0.06 -0.99 6.99 -83.02 -0.58 -1.57 16 21 C 0.00 0.03 11.95 29.96 0.36 0.39 16 22 O -0.20 -2.49 10.55 6.49 0.07 -2.42 16 23 C 0.20 2.56 6.50 -13.08 -0.09 2.47 16 24 C 0.00 0.04 3.44 -90.65 -0.31 -0.27 16 25 C -0.12 -0.86 6.35 -25.07 -0.16 -1.02 16 26 C -0.12 -0.71 6.91 -24.74 -0.17 -0.88 16 27 C -0.12 -0.80 6.83 -25.07 -0.17 -0.97 16 28 C -0.12 -0.99 6.45 -25.61 -0.17 -1.16 16 29 N -0.46 -7.14 11.06 -7.65 -0.08 -7.22 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.16 7.45 -51.93 -0.39 0.78 16 33 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.52 7.84 -51.93 -0.41 0.11 16 37 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 2.16 6.94 -51.93 -0.36 1.80 16 40 H 0.04 0.99 7.65 -51.93 -0.40 0.59 16 41 H 0.41 7.41 6.55 -40.82 -0.27 7.14 16 42 H 0.23 2.48 8.06 -52.49 -0.42 2.06 16 43 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -33.77 405.13 -8.78 -42.55 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.36 Total: 5.22 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.34 Total: 6.28 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.32 Total: -63.64 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.16 Total: -14.19 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.77 -8.78 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977399196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds