Wall clock time and date at job start Wed Apr 1 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 110.78075 * 2 1 4 4 C 1.54319 * 110.72418 * 123.23630 * 2 1 3 5 5 N 1.47027 * 107.27180 * 96.17122 * 4 2 1 6 6 C 1.36932 * 125.64936 * 178.97736 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94493 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.94433 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70098 * 358.94276 * 5 4 2 15 15 C 1.54908 * 104.83177 * 24.12894 * 14 5 4 16 16 H 1.09004 * 111.00237 * 204.87878 * 15 14 5 17 17 N 1.46502 * 111.00691 * 81.06153 * 15 14 5 18 18 C 1.34775 * 119.99597 * 86.45055 * 17 15 14 19 19 O 1.21616 * 120.00548 * 0.02562 * 18 17 15 20 20 C 1.47423 * 120.00048 * 180.02562 * 18 17 15 21 21 C 1.36092 * 126.45020 * 180.02562 * 20 18 17 22 22 O 1.34261 * 106.94914 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22519 * 359.97438 * 22 21 20 24 24 C 1.50697 * 125.37420 * 179.97438 * 23 22 21 25 25 C 1.54271 * 110.03405 * 57.19724 * 24 23 22 26 26 C 1.54889 * 104.19541 * 217.10530 * 25 24 23 27 27 C 1.54893 * 102.74956 * 37.93720 * 26 25 24 28 28 C 1.53875 * 110.03580 * 300.02582 * 24 23 22 29 29 N 1.29937 * 109.24397 * 359.74774 * 23 22 21 30 30 H 1.09003 * 109.46885 * 298.21210 * 1 2 3 31 31 H 1.08995 * 109.47521 * 58.21298 * 1 2 3 32 32 H 1.09000 * 109.47016 * 178.21677 * 1 2 3 33 33 H 1.08999 * 109.47383 * 181.78587 * 3 2 1 34 34 H 1.09001 * 109.46474 * 301.78804 * 3 2 1 35 35 H 1.09006 * 109.46903 * 61.78203 * 3 2 1 36 36 H 1.09006 * 109.88014 * 336.75529 * 4 2 1 37 37 H 1.09001 * 109.88668 * 215.59287 * 4 2 1 38 38 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.36669 * 142.96708 * 14 5 4 40 40 H 1.08999 * 110.36708 * 265.18354 * 14 5 4 41 41 H 0.96994 * 120.00509 * 266.45405 * 17 15 14 42 42 H 1.08000 * 126.52418 * 359.94812 * 21 20 18 43 43 H 1.09003 * 110.01366 * 178.63902 * 24 23 22 44 44 H 1.09004 * 110.48332 * 335.78112 * 25 24 23 45 45 H 1.08995 * 110.48851 * 98.42053 * 25 24 23 46 46 H 1.09007 * 110.75262 * 279.62659 * 26 25 24 47 47 H 1.08998 * 110.75824 * 156.25907 * 26 25 24 48 48 H 1.08995 * 110.48457 * 203.38197 * 27 26 25 49 49 H 1.08995 * 110.59418 * 80.79567 * 27 26 25 50 50 H 1.08998 * 110.03331 * 238.56895 * 28 24 23 51 51 H 1.08998 * 110.02821 * 359.95306 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 2.3717 -2.1531 0.7390 6 6 2.8934 -3.1636 1.5018 7 1 3.2738 -2.9527 2.4904 8 6 2.9332 -4.4590 1.0044 9 7 2.3046 -4.7542 -0.1136 10 14 3.8791 -5.7830 1.9219 11 1 2.9550 -6.5167 2.8235 12 1 4.4757 -6.7308 0.9468 13 1 4.9585 -5.1540 2.7247 14 6 2.0127 -2.2509 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 1.4401 -0.6664 -2.0875 17 7 3.4595 -0.4081 -1.5144 18 6 3.9887 -0.6838 -2.7228 19 8 3.3203 -1.2538 -3.5639 20 6 5.3781 -0.2946 -3.0253 21 6 6.0407 -0.5062 -4.1950 22 8 7.2740 0.0025 -4.0439 23 6 7.3673 0.5159 -2.8090 24 6 8.5883 1.1847 -2.2323 25 6 9.0094 2.3733 -3.1211 26 6 10.5576 2.3443 -3.0856 27 6 10.8717 0.8277 -3.1054 28 6 9.7724 0.2021 -2.2222 29 7 6.2371 0.3500 -2.1897 30 1 -0.3633 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4059 -0.0320 34 1 1.6955 1.9622 -0.8736 35 1 1.7474 1.9426 0.9056 36 1 1.3263 -0.8254 1.9977 37 1 2.9868 -0.3205 1.5776 38 1 2.3321 -5.6595 -0.4610 39 1 2.7294 -2.8787 -1.2169 40 1 1.0047 -2.6506 -0.7985 41 1 3.9926 0.0468 -0.8439 42 1 5.6491 -0.9914 -5.0769 43 1 8.3811 1.5300 -1.2193 44 1 8.6485 2.2341 -4.1402 45 1 8.6357 3.3100 -2.7077 46 1 10.9316 2.8043 -2.1708 47 1 10.9735 2.8365 -3.9647 48 1 11.8571 0.6367 -2.6805 49 1 10.8131 0.4373 -4.1213 50 1 10.1405 0.0713 -1.2046 51 1 9.4637 -0.7588 -2.6338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977399196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:16 Heat of formation + Delta-G solvation = -26.274992 kcal Electronic energy + Delta-G solvation = -31590.802737 eV Core-core repulsion = 27490.816588 eV Total energy + Delta-G solvation = -4099.986149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.55200 -41.21397 -39.46109 -38.96180 -36.02254 -35.67062 -34.47266 -32.67090 -32.35538 -29.98861 -29.66410 -29.07677 -28.09132 -27.47378 -25.83703 -24.48908 -23.47571 -22.50775 -21.67348 -21.49643 -20.89383 -20.04418 -18.97518 -18.69339 -17.88029 -17.70349 -17.44745 -16.71237 -16.70110 -16.32278 -15.88346 -15.72565 -15.37468 -15.30618 -14.82338 -14.68433 -14.56197 -14.27794 -14.15421 -13.75666 -13.63923 -13.21359 -13.08111 -12.89844 -12.82935 -12.66398 -12.62410 -12.55444 -12.25163 -12.13152 -12.03761 -11.96339 -11.92855 -11.84543 -11.81011 -11.69316 -11.57206 -11.44336 -11.41224 -11.26412 -10.71518 -10.21053 -9.94920 -8.85054 -7.88981 -5.23698 0.01885 0.90700 1.40390 1.42708 1.48428 1.51885 2.02880 2.24569 2.46283 2.72686 3.30147 3.49939 3.56600 3.61362 3.63061 3.66767 3.81074 3.93047 4.03882 4.04680 4.36842 4.43486 4.44009 4.45809 4.46420 4.51895 4.53461 4.65417 4.72836 4.80217 4.81206 4.86253 4.90380 4.93629 4.95971 5.00805 5.07604 5.08783 5.16760 5.24120 5.25965 5.28182 5.30841 5.31453 5.44279 5.49498 5.51407 5.63290 5.66753 6.17443 6.29290 6.57982 7.04527 7.10113 7.74662 8.41298 9.22147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003223 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.095370 B = 8685.454344 C = 9998.581952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.239 4.239 7 H 0.081 0.919 8 C -0.066 4.066 9 N -0.948 5.948 10 Si 0.974 3.026 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.183 3.817 15 C 0.133 3.867 16 H 0.089 0.911 17 N -0.679 5.679 18 C 0.593 3.407 19 O -0.574 6.574 20 C -0.096 4.096 21 C 0.024 3.976 22 O -0.189 6.189 23 C 0.211 3.789 24 C 0.001 3.999 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.122 4.122 29 N -0.482 5.482 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.245 0.755 39 H 0.023 0.977 40 H 0.003 0.997 41 H 0.410 0.590 42 H 0.255 0.745 43 H 0.123 0.877 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 19.547 -6.516 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.368 4.368 7 H 0.099 0.901 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.802 3.198 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.192 1.192 14 C 0.057 3.943 15 C 0.027 3.973 16 H 0.107 0.893 17 N -0.328 5.328 18 C 0.380 3.620 19 O -0.454 6.454 20 C -0.215 4.215 21 C -0.051 4.051 22 O -0.075 6.075 23 C 0.001 3.999 24 C -0.018 4.018 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.160 4.160 29 N -0.211 5.211 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.021 0.979 41 H 0.248 0.752 42 H 0.270 0.730 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.877 19.153 -6.447 24.515 hybrid contribution 0.148 -1.853 -0.027 1.859 sum 14.025 17.301 -6.475 23.193 Atomic orbital electron populations 1.21691 0.91899 1.01404 1.03311 1.21813 0.97179 0.95784 0.92422 1.21691 1.00333 0.92786 1.03361 1.21654 0.97020 0.84850 0.95221 1.44657 1.74480 1.08298 1.06873 1.19382 1.31578 0.87172 0.98693 0.90105 1.25663 1.01851 0.99327 0.99093 1.70179 1.46855 1.18827 1.23794 0.85132 0.78519 0.78855 0.77262 1.20974 1.22483 1.19192 1.21385 0.96344 0.91978 0.84617 1.22335 0.81882 0.95507 0.97595 0.89346 1.45598 1.14553 1.58363 1.14282 1.17082 0.84309 0.78106 0.82517 1.90778 1.61927 1.44039 1.48694 1.21687 0.96696 1.08845 0.94253 1.25708 0.81158 0.97285 1.00907 1.84383 1.31638 1.57226 1.34247 1.26944 0.96774 0.96685 0.79489 1.20773 0.85435 0.95091 1.00526 1.22505 0.97550 0.96378 0.99036 1.22501 0.93464 0.95952 1.03452 1.22384 0.98265 0.95703 0.99605 1.22287 0.94051 0.97359 1.02341 1.70748 1.01420 1.17060 1.31894 0.90201 0.90704 0.94618 0.93045 0.91211 0.90121 0.95399 0.95071 0.94587 0.95831 0.97870 0.75225 0.72961 0.85873 0.91600 0.89449 0.89734 0.89943 0.89893 0.91720 0.89350 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.44 71.98 0.61 -3.11 16 2 C -0.07 -2.36 0.81 -50.99 -0.04 -2.40 16 3 C -0.12 -3.11 8.16 71.99 0.59 -2.52 16 4 C 0.14 5.64 6.41 86.73 0.56 6.19 16 5 N -0.62 -32.66 3.39 -691.97 -2.35 -35.01 16 6 C -0.24 -13.88 10.24 84.04 0.86 -13.02 16 7 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 8 C -0.07 -3.94 5.40 84.86 0.46 -3.48 16 9 N -0.95 -60.45 10.68 21.65 0.23 -60.22 16 10 Si 0.97 47.82 29.56 68.60 2.03 49.85 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.18 9.73 4.80 86.85 0.42 10.15 16 15 C 0.13 5.40 2.56 46.38 0.12 5.52 16 16 H 0.09 3.60 7.63 -2.38 -0.02 3.59 16 17 N -0.68 -26.37 4.67 -439.20 -2.05 -28.42 16 18 C 0.59 23.89 7.81 86.66 0.68 24.56 16 19 O -0.57 -26.18 16.63 -4.08 -0.07 -26.25 16 20 C -0.10 -3.24 6.99 40.41 0.28 -2.96 16 21 C 0.02 0.63 11.95 67.32 0.80 1.44 16 22 O -0.19 -4.60 10.55 0.31 0.00 -4.60 16 23 C 0.21 5.20 6.50 88.39 0.57 5.78 16 24 C 0.00 0.02 3.44 -10.81 -0.04 -0.02 16 25 C -0.12 -1.40 6.35 31.67 0.20 -1.20 16 26 C -0.12 -0.98 6.91 31.89 0.22 -0.76 16 27 C -0.12 -1.29 6.83 31.67 0.22 -1.07 16 28 C -0.12 -1.80 6.45 31.32 0.20 -1.60 16 29 N -0.48 -14.96 11.06 -293.03 -3.24 -18.20 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.26 7.45 -2.39 -0.02 1.24 16 33 H 0.05 1.33 6.21 -2.39 -0.01 1.32 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.03 1.14 7.84 -2.38 -0.02 1.12 16 37 H 0.03 1.23 7.82 -2.39 -0.02 1.22 16 38 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.02 1.46 6.94 -2.39 -0.02 1.45 16 40 H 0.00 0.20 7.65 -2.39 -0.02 0.18 16 41 H 0.41 15.01 6.55 -92.71 -0.61 14.40 16 42 H 0.25 5.26 8.06 -2.91 -0.02 5.24 16 43 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 0.91 7.71 -2.38 -0.02 0.89 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 Total: -1.00 -77.66 405.13 1.58 -76.07 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.32 Total: 25.28 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.70 Total: 21.50 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -7.41 Total: -141.85 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -77.66 1.58 -76.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977399196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.798 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds