Wall clock time and date at job start Wed Apr 1 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.77890 * 2 1 4 4 C 1.54427 * 110.72688 * 236.70744 * 2 1 3 5 5 N 1.47026 * 107.27996 * 263.84635 * 4 2 1 6 6 C 1.36935 * 125.64612 * 181.09968 * 5 4 2 7 7 H 1.08003 * 120.00174 * 359.97342 * 6 5 4 8 8 C 1.38817 * 119.99601 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47226 * 59.99784 * 10 8 6 12 12 H 1.48506 * 109.47104 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47359 * 299.99589 * 10 8 6 14 14 C 1.47426 * 108.70360 * 1.05470 * 5 4 2 15 15 C 1.54909 * 104.83095 * 335.87777 * 14 5 4 16 16 H 1.09003 * 111.00291 * 155.11897 * 15 14 5 17 17 N 1.46505 * 111.00151 * 278.92783 * 15 14 5 18 18 C 1.34769 * 120.00124 * 270.42102 * 17 15 14 19 19 O 1.21616 * 120.00285 * 359.97438 * 18 17 15 20 20 C 1.47422 * 119.99730 * 180.02562 * 18 17 15 21 21 C 1.36095 * 126.44508 * 180.02562 * 20 18 17 22 22 O 1.34259 * 106.94601 * 179.70169 * 21 20 18 23 23 C 1.34043 * 108.23007 * 0.26740 * 22 21 20 24 24 C 1.50697 * 125.38266 * 180.02562 * 23 22 21 25 25 C 1.54269 * 110.03068 * 57.88188 * 24 23 22 26 26 C 1.54964 * 104.16235 * 217.13714 * 25 24 23 27 27 C 1.54896 * 102.77596 * 37.88920 * 26 25 24 28 28 C 1.53870 * 110.03440 * 300.66600 * 24 23 22 29 29 N 1.29937 * 109.24375 * 359.97438 * 23 22 21 30 30 H 1.09001 * 109.47288 * 296.75651 * 1 2 3 31 31 H 1.08993 * 109.47525 * 56.76322 * 1 2 3 32 32 H 1.09002 * 109.46697 * 176.76318 * 1 2 3 33 33 H 1.08998 * 109.47486 * 183.23705 * 3 2 1 34 34 H 1.09003 * 109.47058 * 303.23947 * 3 2 1 35 35 H 1.09005 * 109.47181 * 63.23320 * 3 2 1 36 36 H 1.09003 * 109.87847 * 144.42436 * 4 2 1 37 37 H 1.09001 * 110.00720 * 23.33615 * 4 2 1 38 38 H 0.96999 * 120.00289 * 180.02562 * 9 8 6 39 39 H 1.08992 * 110.37098 * 217.03459 * 14 5 4 40 40 H 1.09002 * 110.35884 * 94.71075 * 14 5 4 41 41 H 0.97000 * 119.99579 * 90.42315 * 17 15 14 42 42 H 1.08002 * 126.53001 * 359.97371 * 21 20 18 43 43 H 1.09003 * 110.02150 * 179.27687 * 24 23 22 44 44 H 1.08997 * 110.48744 * 335.78753 * 25 24 23 45 45 H 1.09004 * 110.48360 * 98.42837 * 25 24 23 46 46 H 1.09005 * 110.72021 * 279.57709 * 26 25 24 47 47 H 1.08995 * 110.76475 * 156.22171 * 26 25 24 48 48 H 1.08998 * 110.48277 * 203.40488 * 27 26 25 49 49 H 1.08998 * 110.48673 * 80.76187 * 27 26 25 50 50 H 1.08998 * 110.03553 * 238.56888 * 28 24 23 51 51 H 1.09010 * 110.03224 * 359.95223 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0765 -0.7928 -1.2073 5 7 2.3718 -2.1545 -0.7380 6 6 2.8948 -3.1652 -1.4996 7 1 3.1257 -2.9930 -2.5405 8 6 3.1282 -4.4111 -0.9337 9 7 2.8474 -4.6208 0.3349 10 14 3.8410 -5.7901 -1.9729 11 1 5.1685 -5.3796 -2.4969 12 1 3.9939 -7.0097 -1.1394 13 1 2.9279 -6.0772 -3.1082 14 6 2.0126 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2137 16 1 1.4400 -0.6657 2.0872 17 7 3.4596 -0.4081 1.5145 18 6 3.9682 -0.6261 2.7433 19 8 3.2810 -1.1439 3.6028 20 6 5.3572 -0.2359 3.0460 21 6 6.0007 -0.3941 4.2347 22 8 7.2437 0.0873 4.0739 23 6 7.3599 0.5368 2.8165 24 6 8.5982 1.1571 2.2225 25 6 9.7825 0.1736 2.3239 26 6 11.0024 1.0793 2.6284 27 6 10.4084 2.1444 3.5834 28 6 8.9960 2.4098 3.0225 29 7 6.2364 0.3524 2.1902 30 1 -0.3634 0.4627 0.9176 31 1 -0.3634 0.5632 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1609 1.4063 -0.0580 34 1 1.6750 1.9700 -0.8595 35 1 1.7689 1.9344 0.9176 36 1 2.9875 -0.3226 -1.5777 37 1 1.3289 -0.8278 -1.9997 38 1 3.0108 -5.4913 0.7304 39 1 2.7291 -2.8787 1.2185 40 1 1.0038 -2.6489 0.7995 41 1 4.0075 0.0053 0.8290 42 1 5.5911 -0.8286 5.1346 43 1 8.4201 1.4209 1.1799 44 1 9.6214 -0.5350 3.1363 45 1 9.9232 -0.3526 1.3797 46 1 11.3752 1.5440 1.7155 47 1 11.7904 0.5125 3.1241 48 1 11.0064 3.0553 3.5581 49 1 10.3484 1.7545 4.5995 50 1 9.0118 3.2813 2.3681 51 1 8.2929 2.5696 3.8400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977399198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:20 Heat of formation + Delta-G solvation = -1.361319 kcal Electronic energy + Delta-G solvation = -31633.321950 eV Core-core repulsion = 27534.416139 eV Total energy + Delta-G solvation = -4098.905811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.41071 -39.56537 -38.37642 -37.75133 -34.79248 -33.75749 -32.88796 -31.39036 -30.65105 -29.07715 -28.43404 -27.95982 -26.81209 -25.56534 -24.28840 -22.90027 -22.50971 -21.10030 -20.87675 -20.02951 -19.57556 -18.64696 -17.71136 -16.82229 -16.69369 -16.48711 -15.93015 -15.76722 -15.55182 -14.65355 -14.22660 -14.11510 -14.03985 -13.75852 -13.70262 -13.65087 -13.39944 -13.12947 -12.62598 -12.15812 -12.10427 -11.88246 -11.84410 -11.70643 -11.49498 -11.42490 -11.27246 -11.14395 -11.10677 -11.04971 -10.95407 -10.93136 -10.75829 -10.71848 -10.37477 -10.19618 -9.92185 -9.79306 -9.65636 -9.62719 -8.94692 -8.63577 -8.28950 -6.76013 -5.58142 -3.00769 1.22462 2.12776 2.55171 3.43180 3.47036 3.47451 3.49049 3.71793 3.85263 4.21437 4.24725 4.52966 4.58839 4.92689 4.99116 5.03789 5.05542 5.11324 5.15617 5.25014 5.30118 5.30692 5.36080 5.51876 5.55611 5.56865 5.57364 5.67225 5.69280 5.75680 5.83532 5.85182 5.91690 5.93991 5.99887 6.06883 6.10926 6.16403 6.24275 6.33806 6.45024 6.53972 6.65582 6.75025 6.81292 7.03336 7.47340 7.57572 7.66558 7.92403 8.10222 8.43784 8.68196 9.26873 9.88625 10.52987 11.44601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.003262 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.890319 B = 8580.875371 C = 9932.782083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.122 3.878 16 H 0.088 0.912 17 N -0.680 5.680 18 C 0.598 3.402 19 O -0.542 6.542 20 C -0.058 4.058 21 C 0.001 3.999 22 O -0.196 6.196 23 C 0.199 3.801 24 C 0.004 3.996 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.119 4.119 29 N -0.455 5.455 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.022 0.978 41 H 0.405 0.595 42 H 0.230 0.770 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.606 16.286 6.612 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.017 3.983 16 H 0.106 0.894 17 N -0.329 5.329 18 C 0.383 3.617 19 O -0.420 6.420 20 C -0.178 4.178 21 C -0.072 4.072 22 O -0.083 6.083 23 C -0.010 4.010 24 C -0.015 4.015 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.158 4.158 29 N -0.185 5.185 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.040 0.960 41 H 0.241 0.759 42 H 0.246 0.754 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.034 15.846 6.592 20.404 hybrid contribution 0.529 -0.928 -0.237 1.094 sum 11.562 14.919 6.355 19.916 Atomic orbital electron populations 1.21682 0.93488 1.02492 1.00873 1.21851 0.95986 0.94600 0.96327 1.21721 1.00649 0.95347 1.01185 1.21432 0.96494 0.86770 0.93621 1.44438 1.74182 1.06688 1.07329 1.18984 1.34144 0.89216 0.92842 0.90637 1.24779 1.01771 0.97618 0.96330 1.69790 1.53686 1.22355 1.10774 0.86195 0.78896 0.81652 0.78981 1.21289 1.21637 1.21256 1.22307 1.00104 0.90312 0.85157 1.22600 0.80955 0.98383 0.96404 0.89425 1.45597 1.14711 1.60621 1.11974 1.16647 0.83337 0.78615 0.83115 1.90801 1.59540 1.44326 1.47368 1.21968 0.97310 1.06785 0.91734 1.25252 0.81295 0.99421 1.01253 1.84325 1.31578 1.59498 1.32852 1.26128 0.96795 0.98836 0.79237 1.20447 0.86398 0.94603 1.00061 1.22521 0.92936 0.97441 1.03089 1.22517 0.97107 0.96809 0.99643 1.22385 0.95261 0.99147 0.99404 1.22249 0.97387 0.96391 0.99734 1.70802 1.00255 1.15652 1.31772 0.93069 0.92683 0.91721 0.92733 0.92720 0.92905 0.96036 0.95812 0.93709 0.86979 0.96040 0.75866 0.75406 0.86519 0.90763 0.90305 0.90972 0.91047 0.91218 0.91313 0.90415 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.41 37.16 0.31 -1.67 16 2 C -0.09 -1.50 0.81 -152.62 -0.12 -1.63 16 3 C -0.13 -1.88 8.08 37.16 0.30 -1.58 16 4 C 0.14 2.97 6.41 -3.01 -0.02 2.95 16 5 N -0.60 -15.43 3.39 -170.00 -0.58 -16.01 16 6 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.67 10.09 55.49 0.56 -27.11 16 10 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.15 3.70 5.27 -2.53 -0.01 3.69 16 15 C 0.12 2.46 2.61 -65.78 -0.17 2.29 16 16 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 17 N -0.68 -13.28 4.62 -52.80 -0.24 -13.52 16 18 C 0.60 11.92 7.81 -12.52 -0.10 11.83 16 19 O -0.54 -12.02 16.58 5.26 0.09 -11.94 16 20 C -0.06 -0.99 6.99 -83.02 -0.58 -1.57 16 21 C 0.00 0.02 11.95 29.96 0.36 0.37 16 22 O -0.20 -2.56 10.57 6.52 0.07 -2.49 16 23 C 0.20 2.62 6.50 -13.08 -0.08 2.54 16 24 C 0.00 0.04 3.44 -90.66 -0.31 -0.27 16 25 C -0.12 -1.02 6.36 -25.03 -0.16 -1.18 16 26 C -0.12 -0.78 6.91 -24.69 -0.17 -0.95 16 27 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 28 C -0.12 -0.89 6.45 -25.61 -0.17 -1.06 16 29 N -0.46 -7.32 11.06 -7.66 -0.08 -7.41 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.13 7.57 -51.93 -0.39 0.74 16 33 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.45 7.77 -51.93 -0.40 0.04 16 37 H 0.02 0.50 7.85 -51.93 -0.41 0.09 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.11 3.30 5.87 -51.93 -0.30 2.99 16 40 H 0.02 0.58 7.80 -51.93 -0.41 0.18 16 41 H 0.41 7.65 6.76 -40.82 -0.28 7.38 16 42 H 0.23 2.54 8.06 -52.49 -0.42 2.12 16 43 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.70 7.72 -51.93 -0.40 0.30 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.59 7.67 -51.92 -0.40 0.19 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -33.40 404.49 -8.80 -42.20 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.33 Total: 6.59 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.35 Total: 5.98 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.35 Total: -64.05 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.16 Total: -14.42 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.40 -8.80 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977399198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.840 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds