Wall clock time and date at job start Wed Apr 1 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.77890 * 2 1 4 4 C 1.54427 * 110.72688 * 236.70744 * 2 1 3 5 5 N 1.47026 * 107.27996 * 263.84635 * 4 2 1 6 6 C 1.36935 * 125.64612 * 181.09968 * 5 4 2 7 7 H 1.08003 * 120.00174 * 359.97342 * 6 5 4 8 8 C 1.38817 * 119.99601 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47226 * 59.99784 * 10 8 6 12 12 H 1.48506 * 109.47104 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47359 * 299.99589 * 10 8 6 14 14 C 1.47426 * 108.70360 * 1.05470 * 5 4 2 15 15 C 1.54909 * 104.83095 * 335.87777 * 14 5 4 16 16 H 1.09003 * 111.00291 * 155.11897 * 15 14 5 17 17 N 1.46505 * 111.00151 * 278.92783 * 15 14 5 18 18 C 1.34769 * 120.00124 * 270.42102 * 17 15 14 19 19 O 1.21616 * 120.00285 * 359.97438 * 18 17 15 20 20 C 1.47422 * 119.99730 * 180.02562 * 18 17 15 21 21 C 1.36095 * 126.44508 * 180.02562 * 20 18 17 22 22 O 1.34259 * 106.94601 * 179.70169 * 21 20 18 23 23 C 1.34043 * 108.23007 * 0.26740 * 22 21 20 24 24 C 1.50697 * 125.38266 * 180.02562 * 23 22 21 25 25 C 1.54269 * 110.03068 * 57.88188 * 24 23 22 26 26 C 1.54964 * 104.16235 * 217.13714 * 25 24 23 27 27 C 1.54896 * 102.77596 * 37.88920 * 26 25 24 28 28 C 1.53870 * 110.03440 * 300.66600 * 24 23 22 29 29 N 1.29937 * 109.24375 * 359.97438 * 23 22 21 30 30 H 1.09001 * 109.47288 * 296.75651 * 1 2 3 31 31 H 1.08993 * 109.47525 * 56.76322 * 1 2 3 32 32 H 1.09002 * 109.46697 * 176.76318 * 1 2 3 33 33 H 1.08998 * 109.47486 * 183.23705 * 3 2 1 34 34 H 1.09003 * 109.47058 * 303.23947 * 3 2 1 35 35 H 1.09005 * 109.47181 * 63.23320 * 3 2 1 36 36 H 1.09003 * 109.87847 * 144.42436 * 4 2 1 37 37 H 1.09001 * 110.00720 * 23.33615 * 4 2 1 38 38 H 0.96999 * 120.00289 * 180.02562 * 9 8 6 39 39 H 1.08992 * 110.37098 * 217.03459 * 14 5 4 40 40 H 1.09002 * 110.35884 * 94.71075 * 14 5 4 41 41 H 0.97000 * 119.99579 * 90.42315 * 17 15 14 42 42 H 1.08002 * 126.53001 * 359.97371 * 21 20 18 43 43 H 1.09003 * 110.02150 * 179.27687 * 24 23 22 44 44 H 1.08997 * 110.48744 * 335.78753 * 25 24 23 45 45 H 1.09004 * 110.48360 * 98.42837 * 25 24 23 46 46 H 1.09005 * 110.72021 * 279.57709 * 26 25 24 47 47 H 1.08995 * 110.76475 * 156.22171 * 26 25 24 48 48 H 1.08998 * 110.48277 * 203.40488 * 27 26 25 49 49 H 1.08998 * 110.48673 * 80.76187 * 27 26 25 50 50 H 1.08998 * 110.03553 * 238.56888 * 28 24 23 51 51 H 1.09010 * 110.03224 * 359.95223 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0765 -0.7928 -1.2073 5 7 2.3718 -2.1545 -0.7380 6 6 2.8948 -3.1652 -1.4996 7 1 3.1257 -2.9930 -2.5405 8 6 3.1282 -4.4111 -0.9337 9 7 2.8474 -4.6208 0.3349 10 14 3.8410 -5.7901 -1.9729 11 1 5.1685 -5.3796 -2.4969 12 1 3.9939 -7.0097 -1.1394 13 1 2.9279 -6.0772 -3.1082 14 6 2.0126 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2137 16 1 1.4400 -0.6657 2.0872 17 7 3.4596 -0.4081 1.5145 18 6 3.9682 -0.6261 2.7433 19 8 3.2810 -1.1439 3.6028 20 6 5.3572 -0.2359 3.0460 21 6 6.0007 -0.3941 4.2347 22 8 7.2437 0.0873 4.0739 23 6 7.3599 0.5368 2.8165 24 6 8.5982 1.1571 2.2225 25 6 9.7825 0.1736 2.3239 26 6 11.0024 1.0793 2.6284 27 6 10.4084 2.1444 3.5834 28 6 8.9960 2.4098 3.0225 29 7 6.2364 0.3524 2.1902 30 1 -0.3634 0.4627 0.9176 31 1 -0.3634 0.5632 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 3.1609 1.4063 -0.0580 34 1 1.6750 1.9700 -0.8595 35 1 1.7689 1.9344 0.9176 36 1 2.9875 -0.3226 -1.5777 37 1 1.3289 -0.8278 -1.9997 38 1 3.0108 -5.4913 0.7304 39 1 2.7291 -2.8787 1.2185 40 1 1.0038 -2.6489 0.7995 41 1 4.0075 0.0053 0.8290 42 1 5.5911 -0.8286 5.1346 43 1 8.4201 1.4209 1.1799 44 1 9.6214 -0.5350 3.1363 45 1 9.9232 -0.3526 1.3797 46 1 11.3752 1.5440 1.7155 47 1 11.7904 0.5125 3.1241 48 1 11.0064 3.0553 3.5581 49 1 10.3484 1.7545 4.5995 50 1 9.0118 3.2813 2.3681 51 1 8.2929 2.5696 3.8400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977399198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:20 Heat of formation + Delta-G solvation = -24.216006 kcal Electronic energy + Delta-G solvation = -31634.313004 eV Core-core repulsion = 27534.416139 eV Total energy + Delta-G solvation = -4099.896865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.54300 -41.17506 -39.44052 -38.95610 -36.00904 -35.67058 -34.46047 -32.62633 -32.34787 -29.97033 -29.66104 -29.07071 -28.09195 -27.44815 -25.82644 -24.48142 -23.46817 -22.45587 -21.66526 -21.48641 -20.87428 -20.03731 -18.96115 -18.72162 -17.89821 -17.65891 -17.44980 -16.73353 -16.63592 -16.30376 -15.86058 -15.67931 -15.37796 -15.28007 -14.81926 -14.67023 -14.55243 -14.27365 -14.17026 -13.76379 -13.68353 -13.06046 -13.02897 -12.90924 -12.85238 -12.64529 -12.59020 -12.54930 -12.24803 -12.16560 -12.02886 -11.95933 -11.92927 -11.82517 -11.79259 -11.70908 -11.49701 -11.43102 -11.39502 -11.25205 -10.77164 -10.18400 -9.91917 -8.86131 -7.76618 -5.21696 0.03238 0.92020 1.42069 1.45787 1.49271 1.52195 2.04948 2.27662 2.47593 2.74008 3.32492 3.52446 3.56715 3.62921 3.63187 3.69058 3.81986 3.94819 4.04982 4.05397 4.38407 4.43640 4.44885 4.46189 4.49113 4.52339 4.53157 4.66504 4.74407 4.79383 4.82190 4.84968 4.89770 4.93412 4.96704 5.01441 5.07484 5.09248 5.17942 5.23668 5.26011 5.27849 5.30428 5.32004 5.45553 5.49531 5.51048 5.63387 5.80505 6.29001 6.31338 6.59774 7.07865 7.12443 7.77700 8.41688 9.23858 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.003262 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.890319 B = 8580.875371 C = 9932.782083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.618 5.618 6 C -0.235 4.235 7 H 0.083 0.917 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.275 1.275 14 C 0.156 3.844 15 C 0.132 3.868 16 H 0.087 0.913 17 N -0.677 5.677 18 C 0.594 3.406 19 O -0.574 6.574 20 C -0.096 4.096 21 C 0.023 3.977 22 O -0.189 6.189 23 C 0.210 3.790 24 C 0.001 3.999 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.115 4.115 29 N -0.483 5.483 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.243 0.757 39 H 0.067 0.933 40 H -0.008 1.008 41 H 0.409 0.591 42 H 0.255 0.745 43 H 0.122 0.878 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.203 18.787 5.935 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.364 4.364 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.029 3.971 15 C 0.026 3.974 16 H 0.105 0.895 17 N -0.326 5.326 18 C 0.381 3.619 19 O -0.455 6.455 20 C -0.215 4.215 21 C -0.051 4.051 22 O -0.075 6.075 23 C 0.000 4.000 24 C -0.018 4.018 25 C -0.162 4.162 26 C -0.154 4.154 27 C -0.159 4.159 28 C -0.154 4.154 29 N -0.212 5.212 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.010 0.990 41 H 0.245 0.755 42 H 0.271 0.729 43 H 0.140 0.860 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.633 18.395 5.876 23.076 hybrid contribution 0.070 -1.695 -0.031 1.697 sum 12.703 16.700 5.845 21.781 Atomic orbital electron populations 1.21681 0.91856 1.01476 1.03201 1.21845 0.97187 0.95693 0.92636 1.21672 1.00343 0.92955 1.03110 1.21658 0.96972 0.84837 0.95226 1.44666 1.74001 1.08206 1.07498 1.19407 1.33465 0.90106 0.93452 0.89925 1.25639 1.02820 1.00154 0.97475 1.70103 1.55144 1.22107 1.12462 0.85154 0.78481 0.78268 0.77449 1.20332 1.22344 1.20136 1.21943 0.96971 0.92930 0.85227 1.22339 0.81777 0.95788 0.97447 0.89483 1.45544 1.14450 1.60432 1.12144 1.17057 0.84369 0.77764 0.82754 1.90766 1.60769 1.45767 1.48170 1.21708 0.96611 1.09680 0.93451 1.25711 0.81044 0.97330 1.01010 1.84375 1.30951 1.59237 1.32932 1.26937 0.97001 0.97153 0.78869 1.20766 0.85073 0.95587 1.00417 1.22543 0.93574 0.97447 1.02601 1.22513 0.96195 0.96383 1.00312 1.22389 0.94580 0.99879 0.99024 1.22261 0.97854 0.95792 0.99453 1.70750 1.01130 1.16956 1.32381 0.91028 0.90018 0.94474 0.93159 0.90099 0.91550 0.95401 0.95236 0.94744 0.91469 0.98982 0.75457 0.72906 0.86013 0.92029 0.90421 0.89719 0.90282 0.89454 0.91708 0.88772 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.41 71.98 0.61 -3.07 16 2 C -0.07 -2.44 0.81 -50.96 -0.04 -2.48 16 3 C -0.12 -3.19 8.08 71.98 0.58 -2.60 16 4 C 0.14 5.67 6.41 86.76 0.56 6.23 16 5 N -0.62 -32.60 3.39 -691.77 -2.35 -34.95 16 6 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 7 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 8 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 9 N -0.95 -59.94 10.09 21.65 0.22 -59.72 16 10 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.16 8.26 5.27 86.85 0.46 8.72 16 15 C 0.13 5.47 2.61 46.38 0.12 5.59 16 16 H 0.09 3.61 7.53 -2.39 -0.02 3.59 16 17 N -0.68 -27.01 4.62 -439.21 -2.03 -29.04 16 18 C 0.59 24.41 7.81 86.66 0.68 25.08 16 19 O -0.57 -26.45 16.58 -4.08 -0.07 -26.51 16 20 C -0.10 -3.32 6.99 40.41 0.28 -3.04 16 21 C 0.02 0.64 11.95 67.32 0.80 1.44 16 22 O -0.19 -4.74 10.57 0.43 0.00 -4.74 16 23 C 0.21 5.37 6.50 88.39 0.57 5.95 16 24 C 0.00 0.02 3.44 -10.82 -0.04 -0.02 16 25 C -0.12 -1.90 6.36 31.70 0.20 -1.69 16 26 C -0.12 -1.18 6.91 31.91 0.22 -0.96 16 27 C -0.12 -1.20 6.83 31.67 0.22 -0.98 16 28 C -0.12 -1.47 6.45 31.32 0.20 -1.27 16 29 N -0.48 -15.51 11.06 -293.04 -3.24 -18.75 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.29 7.57 -2.39 -0.02 1.27 16 33 H 0.05 1.35 6.42 -2.39 -0.02 1.34 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.03 1.12 7.77 -2.39 -0.02 1.10 16 37 H 0.03 1.19 7.85 -2.39 -0.02 1.18 16 38 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 40 H -0.01 -0.44 7.80 -2.39 -0.02 -0.45 16 41 H 0.41 15.59 6.76 -92.71 -0.63 14.96 16 42 H 0.26 5.41 8.06 -2.91 -0.02 5.39 16 43 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 1.10 7.72 -2.39 -0.02 1.08 16 45 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.06 0.90 7.67 -2.38 -0.02 0.88 16 Total: -1.00 -76.39 404.49 1.62 -74.77 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.31 Total: 28.79 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.75 Total: 20.62 kcal Atomic # 7 Polarization: -135.07 SS G_CDS: -7.40 Total: -142.46 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.25 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -76.39 1.62 -74.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977399198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.551 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds