Wall clock time and date at job start Wed Apr 1 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.08994 * 111.00852 * 204.88001 * 15 14 5 17 17 N 1.46499 * 111.00010 * 81.06591 * 15 14 5 18 18 C 1.34776 * 120.00077 * 86.45742 * 17 15 14 19 19 O 1.21579 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.47519 * 120.00137 * 179.97438 * 18 17 15 21 21 C 1.36821 * 126.94329 * 179.70550 * 20 18 17 22 22 C 1.41266 * 103.84512 * 179.91139 * 21 20 18 23 23 C 1.50699 * 126.70554 * 180.12849 * 22 21 20 24 24 C 1.54272 * 110.03209 * 33.21157 * 23 22 21 25 25 C 1.54962 * 104.15689 * 217.13821 * 24 23 22 26 26 C 1.54886 * 102.78131 * 37.88973 * 25 24 23 27 27 C 1.53872 * 110.03121 * 275.99405 * 23 22 21 28 28 N 1.30130 * 106.58856 * 0.35697 * 22 21 20 29 29 O 1.20881 * 111.98225 * 359.77247 * 28 22 21 30 30 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 31 31 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 32 32 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 33 33 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 34 34 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 35 35 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 36 36 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 37 37 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 38 38 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 39 39 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 40 40 H 1.08997 * 110.36396 * 265.17736 * 14 5 4 41 41 H 0.97002 * 120.00181 * 266.44704 * 17 15 14 42 42 H 1.08000 * 128.07619 * 0.02562 * 21 20 18 43 43 H 1.08997 * 110.01835 * 154.59911 * 23 22 21 44 44 H 1.09005 * 110.48531 * 335.78485 * 24 23 22 45 45 H 1.08997 * 110.48324 * 98.42309 * 24 23 22 46 46 H 1.08997 * 110.71750 * 279.56928 * 25 24 23 47 47 H 1.09003 * 110.76385 * 156.22134 * 25 24 23 48 48 H 1.08999 * 110.48724 * 203.40792 * 26 25 24 49 49 H 1.08992 * 110.49074 * 80.75820 * 26 25 24 50 50 H 1.09000 * 110.03205 * 238.56941 * 27 23 22 51 51 H 1.08996 * 110.03377 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4401 -0.6665 -2.0874 17 7 3.4595 -0.4084 -1.5143 18 6 3.9888 -0.6842 -2.7228 19 8 3.3207 -1.2546 -3.5632 20 6 5.3788 -0.2938 -3.0257 21 6 6.0564 -0.5066 -4.1951 22 6 7.3293 0.0572 -3.9556 23 6 8.4881 0.1067 -4.9179 24 6 7.9687 0.2489 -6.3636 25 6 8.9413 -0.6178 -7.2027 26 6 9.2098 -1.8281 -6.2742 27 6 9.2772 -1.2130 -4.8610 28 7 7.3075 0.5210 -2.7400 29 8 6.2389 0.3385 -2.2052 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3262 -0.8254 1.9978 37 1 2.9868 -0.3207 1.5777 38 1 3.0109 -5.4911 -0.7266 39 1 2.7292 -2.8788 -1.2167 40 1 1.0046 -2.6507 -0.7983 41 1 3.9926 0.0465 -0.8437 42 1 5.7005 -0.9908 -5.0925 43 1 9.1417 0.9435 -4.6720 44 1 6.9513 -0.1342 -6.4428 45 1 8.0112 1.2900 -6.6834 46 1 9.8642 -0.0747 -7.4060 47 1 8.4691 -0.9402 -8.1307 48 1 10.1576 -2.3020 -6.5295 49 1 8.3932 -2.5470 -6.3387 50 1 10.3141 -1.0166 -4.5883 51 1 8.8218 -1.8895 -4.1377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977621631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:12 Heat of formation + Delta-G solvation = 39.741449 kcal Electronic energy + Delta-G solvation = -31633.361264 eV Core-core repulsion = 27536.237802 eV Total energy + Delta-G solvation = -4097.123461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.94563 -39.77114 -38.58915 -37.95358 -34.13489 -33.79386 -33.13660 -31.84572 -30.70914 -28.99008 -28.90164 -28.22409 -26.91141 -25.62703 -24.33493 -23.40440 -22.84995 -21.17334 -20.77815 -20.23270 -19.55738 -18.85279 -17.92428 -17.64178 -16.73594 -16.30608 -15.94412 -15.76300 -15.36683 -14.76685 -14.53247 -14.16132 -13.91329 -13.80823 -13.73767 -13.48325 -13.28992 -13.21189 -12.70289 -12.23070 -12.15709 -11.97787 -11.90180 -11.79699 -11.52025 -11.37065 -11.34913 -11.32880 -11.18279 -11.04148 -10.92809 -10.76832 -10.75209 -10.45446 -10.26537 -10.04741 -10.04016 -9.91794 -9.79465 -9.69998 -9.61959 -8.70398 -8.49216 -6.82155 -5.63286 -3.06066 0.95333 2.05619 2.77901 3.30712 3.40914 3.45358 3.46883 3.50504 3.85798 4.22708 4.36447 4.49134 4.68324 4.69309 4.92480 5.03795 5.12848 5.16188 5.20871 5.21812 5.25987 5.26862 5.38356 5.40996 5.48963 5.52060 5.59828 5.61774 5.66070 5.74995 5.78050 5.85927 5.90816 5.96217 6.00334 6.07077 6.07238 6.07640 6.14088 6.23890 6.35787 6.47708 6.56555 6.61141 6.69229 6.91149 7.42155 7.60915 7.70842 7.88763 8.13820 8.37311 8.39093 9.21835 9.83421 10.46942 11.39574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003223 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.519079 B = 8686.296688 C =10359.509825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.122 3.878 16 H 0.090 0.910 17 N -0.684 5.684 18 C 0.602 3.398 19 O -0.513 6.513 20 C -0.066 4.066 21 C -0.158 4.158 22 C 0.020 3.980 23 C -0.013 4.013 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.117 4.117 28 N -0.350 5.350 29 O 0.114 5.886 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.024 0.976 41 H 0.403 0.597 42 H 0.180 0.820 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 12.752 -10.611 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.191 4.191 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.017 3.983 16 H 0.108 0.892 17 N -0.333 5.333 18 C 0.384 3.616 19 O -0.390 6.390 20 C -0.132 4.132 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.032 4.032 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.155 4.155 28 N -0.051 5.051 29 O 0.043 5.957 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.042 0.958 41 H 0.239 0.761 42 H 0.198 0.802 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.856 12.728 -10.432 18.236 hybrid contribution 0.225 -0.987 0.474 1.118 sum 8.081 11.741 -9.957 17.387 Atomic orbital electron populations 1.21690 0.93326 1.02555 1.01017 1.21840 0.96147 0.94576 0.96138 1.21749 1.00511 0.95371 1.01513 1.21435 0.96607 0.86760 0.93645 1.44440 1.74280 1.06698 1.07259 1.18982 1.34287 0.89208 0.92855 0.90584 1.24778 1.01670 0.97624 0.96340 1.69773 1.53646 1.22417 1.10764 0.86194 0.78916 0.81619 0.79005 1.21227 1.21606 1.21241 1.22324 1.00378 0.90070 0.85225 1.22650 0.80242 0.98719 0.96680 0.89207 1.45761 1.15443 1.58437 1.13690 1.16443 0.82186 0.79648 0.83337 1.90859 1.58917 1.41479 1.47702 1.24475 0.94640 1.02215 0.91844 1.22712 0.92474 1.03064 0.99746 1.23534 0.96958 1.00206 0.93098 1.20195 0.91581 0.99547 0.91912 1.22522 1.00065 1.00615 0.92540 1.22505 0.99206 0.96296 0.98116 1.22382 1.01980 0.97740 0.94177 1.22202 0.99957 0.95330 0.98025 1.73703 1.01995 1.19372 1.10017 1.84973 1.16021 1.56893 1.37840 0.92547 0.93027 0.91676 0.92815 0.92706 0.92484 0.95683 0.95896 0.93630 0.86818 0.95815 0.76102 0.80232 0.89168 0.90555 0.91062 0.91351 0.91147 0.91409 0.91180 0.91077 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.44 37.16 0.31 -1.54 16 2 C -0.09 -1.37 0.81 -152.67 -0.12 -1.50 16 3 C -0.13 -1.71 8.16 37.15 0.30 -1.41 16 4 C 0.14 2.78 6.41 -3.06 -0.02 2.76 16 5 N -0.60 -14.76 3.39 -170.08 -0.58 -15.34 16 6 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.15 3.48 5.26 -2.53 -0.01 3.47 16 15 C 0.12 2.26 2.56 -65.78 -0.17 2.09 16 16 H 0.09 1.65 7.63 -51.93 -0.40 1.25 16 17 N -0.68 -11.93 4.67 -52.78 -0.25 -12.17 16 18 C 0.60 10.91 7.82 -12.48 -0.10 10.82 16 19 O -0.51 -10.69 16.66 5.30 0.09 -10.60 16 20 C -0.07 -1.04 7.29 -36.31 -0.26 -1.31 16 21 C -0.16 -2.21 9.88 -38.94 -0.38 -2.59 16 22 C 0.02 0.26 6.01 -82.16 -0.49 -0.23 16 23 C -0.01 -0.13 3.43 -90.65 -0.31 -0.44 16 24 C -0.12 -0.98 6.32 -25.03 -0.16 -1.14 16 25 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 26 C -0.13 -1.00 6.83 -25.07 -0.17 -1.18 16 27 C -0.12 -1.11 6.45 -25.61 -0.17 -1.28 16 28 N -0.35 -5.29 12.04 33.52 0.40 -4.88 16 29 O 0.11 1.79 11.04 15.56 0.17 1.96 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 33 H 0.05 0.68 6.21 -51.93 -0.32 0.35 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.50 7.84 -51.93 -0.41 0.09 16 37 H 0.02 0.44 7.82 -51.93 -0.41 0.04 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.11 3.18 5.87 -51.93 -0.30 2.88 16 40 H 0.02 0.61 7.72 -51.93 -0.40 0.21 16 41 H 0.40 6.46 6.64 -40.82 -0.27 6.19 16 42 H 0.18 2.23 7.29 -52.49 -0.38 1.85 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.66 6.26 -51.93 -0.33 0.34 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -31.26 401.20 -8.95 -40.21 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.20 Total: 5.11 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.18 Total: -1.16 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.14 Total: -58.75 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.26 Total: -8.64 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.26 -8.95 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977621631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.948 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds