Wall clock time and date at job start Wed Apr 1 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.08994 * 111.00852 * 204.88001 * 15 14 5 17 17 N 1.46499 * 111.00010 * 81.06591 * 15 14 5 18 18 C 1.34776 * 120.00077 * 86.45742 * 17 15 14 19 19 O 1.21579 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.47519 * 120.00137 * 179.97438 * 18 17 15 21 21 C 1.36821 * 126.94329 * 179.70550 * 20 18 17 22 22 C 1.41266 * 103.84512 * 179.91139 * 21 20 18 23 23 C 1.50699 * 126.70554 * 180.12849 * 22 21 20 24 24 C 1.54272 * 110.03209 * 33.21157 * 23 22 21 25 25 C 1.54962 * 104.15689 * 217.13821 * 24 23 22 26 26 C 1.54886 * 102.78131 * 37.88973 * 25 24 23 27 27 C 1.53872 * 110.03121 * 275.99405 * 23 22 21 28 28 N 1.30130 * 106.58856 * 0.35697 * 22 21 20 29 29 O 1.20881 * 111.98225 * 359.77247 * 28 22 21 30 30 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 31 31 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 32 32 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 33 33 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 34 34 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 35 35 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 36 36 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 37 37 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 38 38 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 39 39 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 40 40 H 1.08997 * 110.36396 * 265.17736 * 14 5 4 41 41 H 0.97002 * 120.00181 * 266.44704 * 17 15 14 42 42 H 1.08000 * 128.07619 * 0.02562 * 21 20 18 43 43 H 1.08997 * 110.01835 * 154.59911 * 23 22 21 44 44 H 1.09005 * 110.48531 * 335.78485 * 24 23 22 45 45 H 1.08997 * 110.48324 * 98.42309 * 24 23 22 46 46 H 1.08997 * 110.71750 * 279.56928 * 25 24 23 47 47 H 1.09003 * 110.76385 * 156.22134 * 25 24 23 48 48 H 1.08999 * 110.48724 * 203.40792 * 26 25 24 49 49 H 1.08992 * 110.49074 * 80.75820 * 26 25 24 50 50 H 1.09000 * 110.03205 * 238.56941 * 27 23 22 51 51 H 1.08996 * 110.03377 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4401 -0.6665 -2.0874 17 7 3.4595 -0.4084 -1.5143 18 6 3.9888 -0.6842 -2.7228 19 8 3.3207 -1.2546 -3.5632 20 6 5.3788 -0.2938 -3.0257 21 6 6.0564 -0.5066 -4.1951 22 6 7.3293 0.0572 -3.9556 23 6 8.4881 0.1067 -4.9179 24 6 7.9687 0.2489 -6.3636 25 6 8.9413 -0.6178 -7.2027 26 6 9.2098 -1.8281 -6.2742 27 6 9.2772 -1.2130 -4.8610 28 7 7.3075 0.5210 -2.7400 29 8 6.2389 0.3385 -2.2052 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3262 -0.8254 1.9978 37 1 2.9868 -0.3207 1.5777 38 1 3.0109 -5.4911 -0.7266 39 1 2.7292 -2.8788 -1.2167 40 1 1.0046 -2.6507 -0.7983 41 1 3.9926 0.0465 -0.8437 42 1 5.7005 -0.9908 -5.0925 43 1 9.1417 0.9435 -4.6720 44 1 6.9513 -0.1342 -6.4428 45 1 8.0112 1.2900 -6.6834 46 1 9.8642 -0.0747 -7.4060 47 1 8.4691 -0.9402 -8.1307 48 1 10.1576 -2.3020 -6.5295 49 1 8.3932 -2.5470 -6.3387 50 1 10.3141 -1.0166 -4.5883 51 1 8.8218 -1.8895 -4.1377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977621631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:11 Heat of formation + Delta-G solvation = 21.652890 kcal Electronic energy + Delta-G solvation = -31634.145642 eV Core-core repulsion = 27536.237802 eV Total energy + Delta-G solvation = -4097.907840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.10972 -41.28368 -39.49660 -39.33084 -35.75799 -35.08881 -34.59167 -33.07105 -32.60074 -29.92208 -29.69064 -29.62041 -28.09013 -27.42816 -25.82556 -24.56276 -24.30435 -22.42807 -21.79061 -21.43294 -20.87990 -20.08612 -19.17741 -18.82462 -18.70567 -17.56792 -17.32585 -16.80084 -16.51754 -16.15669 -15.99257 -15.71769 -15.45413 -15.28308 -14.82668 -14.65440 -14.34498 -14.18584 -14.11046 -13.73417 -13.66522 -13.10932 -13.00987 -12.98169 -12.90155 -12.83388 -12.60766 -12.56277 -12.40583 -12.18260 -12.02952 -11.94081 -11.81054 -11.77686 -11.57565 -11.51104 -11.47514 -11.40316 -11.33317 -11.06750 -10.86102 -10.75804 -10.09912 -8.84416 -7.75571 -5.19898 -0.31964 0.95023 1.43864 1.46134 1.46992 1.52888 1.90482 2.17080 2.48681 2.86860 3.30544 3.34484 3.53963 3.67924 3.68446 3.71846 3.83511 3.95099 3.96619 4.03765 4.07068 4.36342 4.40342 4.49635 4.50220 4.51371 4.57316 4.68543 4.71265 4.80415 4.82722 4.84224 4.89500 4.94198 4.94350 5.01929 5.06756 5.11183 5.20859 5.24986 5.25447 5.27029 5.33897 5.34626 5.47577 5.48021 5.53559 5.61297 5.82106 6.29405 6.31903 6.89297 6.99761 7.10283 7.79834 8.42863 9.24678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.003223 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.519079 B = 8686.296688 C =10359.509825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.128 4.128 4 C 0.135 3.865 5 N -0.618 5.618 6 C -0.233 4.233 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.974 3.026 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.279 1.279 14 C 0.153 3.847 15 C 0.134 3.866 16 H 0.093 0.907 17 N -0.678 5.678 18 C 0.602 3.398 19 O -0.546 6.546 20 C -0.083 4.083 21 C -0.148 4.148 22 C 0.031 3.969 23 C -0.015 4.015 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.117 4.117 28 N -0.363 5.363 29 O 0.105 5.895 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.243 0.757 39 H 0.070 0.930 40 H -0.006 1.006 41 H 0.411 0.589 42 H 0.194 0.806 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 15.008 -10.905 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.185 4.185 4 C 0.011 3.989 5 N -0.344 5.344 6 C -0.362 4.362 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.803 3.197 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.205 1.205 14 C 0.026 3.974 15 C 0.029 3.971 16 H 0.111 0.889 17 N -0.327 5.327 18 C 0.386 3.614 19 O -0.425 6.425 20 C -0.149 4.149 21 C -0.170 4.170 22 C -0.127 4.127 23 C -0.034 4.034 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.163 4.163 27 C -0.156 4.156 28 N -0.067 5.067 29 O 0.036 5.964 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.012 0.988 41 H 0.248 0.752 42 H 0.211 0.789 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.962 15.033 -10.678 20.502 hybrid contribution -0.088 -1.685 0.578 1.783 sum 8.874 13.348 -10.100 18.946 Atomic orbital electron populations 1.21693 0.91920 1.01439 1.03285 1.21826 0.97175 0.95784 0.92453 1.21729 1.00532 0.92793 1.03489 1.21680 0.97146 0.84802 0.95309 1.44669 1.74034 1.08199 1.07526 1.19380 1.33344 0.90104 0.93418 0.90005 1.25574 1.02862 1.00026 0.97419 1.70077 1.55193 1.22079 1.12308 0.85212 0.78464 0.78513 0.77529 1.20285 1.22411 1.20482 1.21979 0.97262 0.92930 0.85183 1.22372 0.81157 0.95837 0.97783 0.88862 1.45686 1.15169 1.58094 1.13798 1.16668 0.82843 0.78834 0.83055 1.90833 1.60097 1.42904 1.48656 1.24154 0.94068 1.03874 0.92812 1.23011 0.92581 1.01941 0.99501 1.24039 0.97405 0.98459 0.92776 1.20428 0.90634 1.00166 0.92212 1.22553 0.99981 1.01759 0.91371 1.22498 0.99553 0.95471 0.97895 1.22394 1.02352 0.98081 0.93451 1.22217 1.00284 0.94615 0.98459 1.73692 1.01800 1.20229 1.10932 1.84960 1.16134 1.57369 1.37983 0.90366 0.90669 0.94512 0.92718 0.90953 0.90309 0.95378 0.94995 0.94725 0.91161 0.98827 0.75167 0.78905 0.88166 0.91200 0.89722 0.89928 0.90204 0.90136 0.92150 0.89832 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.44 71.98 0.61 -2.79 16 2 C -0.07 -2.17 0.81 -50.99 -0.04 -2.21 16 3 C -0.13 -2.86 8.16 71.98 0.59 -2.27 16 4 C 0.14 5.21 6.41 86.73 0.56 5.76 16 5 N -0.62 -31.08 3.39 -692.00 -2.35 -33.43 16 6 C -0.23 -13.02 10.27 84.03 0.86 -12.16 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 8 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 9 N -0.95 -58.17 10.09 21.65 0.22 -57.96 16 10 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 C 0.15 7.64 5.26 86.86 0.46 8.10 16 15 C 0.13 5.02 2.56 46.38 0.12 5.13 16 16 H 0.09 3.45 7.63 -2.39 -0.02 3.44 16 17 N -0.68 -23.80 4.67 -439.16 -2.05 -25.86 16 18 C 0.60 22.33 7.82 86.69 0.68 23.01 16 19 O -0.55 -23.49 16.66 -3.96 -0.07 -23.56 16 20 C -0.08 -2.68 7.29 24.39 0.18 -2.50 16 21 C -0.15 -4.11 9.88 22.68 0.22 -3.89 16 22 C 0.03 0.80 6.01 43.55 0.26 1.06 16 23 C -0.02 -0.28 3.43 -10.81 -0.04 -0.31 16 24 C -0.12 -1.68 6.32 31.70 0.20 -1.48 16 25 C -0.12 -1.33 6.91 31.91 0.22 -1.11 16 26 C -0.13 -1.79 6.83 31.67 0.22 -1.57 16 27 C -0.12 -2.08 6.45 31.32 0.20 -1.88 16 28 N -0.36 -10.78 12.04 -48.87 -0.59 -11.37 16 29 O 0.11 3.27 11.04 65.84 0.73 4.00 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.19 7.45 -2.39 -0.02 1.18 16 33 H 0.05 1.22 6.21 -2.39 -0.01 1.21 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.08 7.84 -2.39 -0.02 1.06 16 37 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 38 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.07 4.18 5.87 -2.39 -0.01 4.16 16 40 H -0.01 -0.33 7.72 -2.39 -0.02 -0.35 16 41 H 0.41 13.03 6.64 -92.71 -0.62 12.41 16 42 H 0.19 4.72 7.29 -2.91 -0.02 4.70 16 43 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.09 6.26 -2.38 -0.01 1.07 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 51 H 0.04 1.01 7.67 -2.39 -0.02 0.99 16 Total: -1.00 -71.04 401.20 4.00 -67.04 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.32 Total: 24.88 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.76 Total: 7.54 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -4.77 Total: -128.61 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.66 Total: -19.56 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -71.04 4.00 -67.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977621631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.698 kcal (2) G-P(sol) polarization free energy of solvation -71.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds