Wall clock time and date at job start Wed Apr 1 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30179 * 126.80302 * 2 1 4 4 O 1.20918 * 111.60535 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.56512 * 359.76580 * 4 3 2 6 6 C 1.50700 * 126.77329 * 180.28521 * 5 4 3 7 7 C 1.35445 * 106.44536 * 0.38067 * 5 4 3 8 8 C 1.50703 * 128.00660 * 179.91463 * 7 5 4 9 9 C 1.50706 * 109.46796 * 269.67680 * 8 7 5 10 10 O 1.21270 * 119.99907 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99586 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99681 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.26680 * 34.50722 * 12 11 9 14 14 C 1.51202 * 109.26924 * 274.99944 * 12 11 9 15 15 C 1.49307 * 116.94576 * 272.63132 * 14 12 11 16 16 C 1.49195 * 121.14020 * 359.73419 * 15 14 12 17 17 H 1.09004 * 108.41754 * 122.31777 * 16 15 14 18 18 C 1.54192 * 111.21869 * 240.34280 * 16 15 14 19 19 N 1.46883 * 106.35537 * 154.09867 * 18 16 15 20 20 C 1.36940 * 125.36346 * 162.42126 * 19 18 16 21 21 H 1.08002 * 119.99515 * 179.69295 * 20 19 18 22 22 C 1.38806 * 120.00496 * 359.69663 * 20 19 18 23 23 N 1.31624 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00280 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47423 * 89.99600 * 24 22 20 26 26 H 1.48505 * 109.46917 * 209.99715 * 24 22 20 27 27 H 1.48495 * 109.46829 * 329.99500 * 24 22 20 28 28 C 1.46796 * 109.26747 * 342.15529 * 19 18 16 29 29 C 1.52595 * 116.85318 * 359.63570 * 16 15 14 30 30 H 1.08998 * 110.47160 * 91.64206 * 29 16 15 31 31 C 1.52798 * 110.38428 * 328.35482 * 29 16 15 32 32 H 1.08999 * 109.46945 * 270.02240 * 1 2 3 33 33 H 1.09004 * 109.47061 * 30.02031 * 1 2 3 34 34 H 1.08997 * 109.47403 * 150.02156 * 1 2 3 35 35 H 1.08997 * 109.47113 * 270.10883 * 6 5 4 36 36 H 1.08999 * 109.47436 * 30.11288 * 6 5 4 37 37 H 1.09006 * 109.46616 * 150.11247 * 6 5 4 38 38 H 1.08990 * 109.47287 * 149.67347 * 8 7 5 39 39 H 1.09004 * 109.47100 * 29.67244 * 8 7 5 40 40 H 0.97000 * 120.00014 * 0.02562 * 11 9 8 41 41 H 1.08996 * 107.95342 * 150.74239 * 14 12 11 42 42 H 1.09001 * 107.92192 * 34.48889 * 14 12 11 43 43 H 1.08995 * 107.08034 * 236.73644 * 15 14 12 44 44 H 1.09000 * 107.07991 * 122.73317 * 15 14 12 45 45 H 1.08997 * 110.07417 * 34.87086 * 18 16 15 46 46 H 1.09001 * 110.07285 * 273.32314 * 18 16 15 47 47 H 0.97002 * 119.99788 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.83067 * 120.55245 * 28 19 18 49 49 H 1.08997 * 109.82969 * 241.53186 * 28 19 18 50 50 H 1.09003 * 109.83975 * 183.67583 * 31 29 16 51 51 H 1.08991 * 109.84426 * 304.65173 * 31 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6068 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3539 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0014 9 6 1.8272 -3.0720 -1.4191 10 8 2.0331 -2.3119 -2.3413 11 7 1.4804 -4.3511 -1.6646 12 6 1.3528 -4.8233 -3.0454 13 1 2.0933 -4.3204 -3.6674 14 6 -0.0323 -4.4988 -3.5578 15 6 -1.1048 -5.5028 -3.2910 16 6 -0.8117 -6.7682 -2.5570 17 1 -1.4568 -6.8146 -1.6795 18 6 -1.1217 -8.0027 -3.4272 19 7 -0.2625 -9.0854 -2.9301 20 6 -0.4462 -10.4198 -3.1771 21 1 0.2442 -11.1441 -2.7707 22 6 -1.5195 -10.8414 -3.9497 23 7 -2.3611 -9.9586 -4.4446 24 14 -1.7704 -12.6617 -4.2860 25 1 -2.6252 -13.2483 -3.2229 26 1 -2.4313 -12.8350 -5.6045 27 1 -0.4540 -13.3488 -4.2980 28 6 0.8276 -8.5111 -2.1322 29 6 0.6295 -6.9848 -2.1048 30 1 0.7743 -6.5996 -1.0955 31 6 1.5997 -6.3312 -3.0878 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8901 -0.5135 35 1 5.2208 -1.5555 -1.0113 36 1 5.6633 -0.7849 0.5310 37 1 4.7623 -2.3200 0.5293 38 1 1.0051 -2.7035 0.5155 39 1 2.7228 -3.1700 0.5155 40 1 1.3153 -4.9589 -0.9269 41 1 0.0334 -4.3558 -4.6363 42 1 -0.3406 -3.5520 -3.1144 43 1 -1.5281 -5.7829 -4.2556 44 1 -1.8943 -4.9896 -2.7420 45 1 -0.8916 -7.7917 -4.4715 46 1 -2.1708 -8.2798 -3.3233 47 1 -3.1114 -10.2533 -4.9842 48 1 0.7913 -8.9071 -1.1173 49 1 1.7872 -8.7513 -2.5901 50 1 2.6266 -6.5464 -2.7924 51 1 1.4166 -6.7080 -4.0940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980251417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:11 Heat of formation + Delta-G solvation = 38.561137 kcal Electronic energy + Delta-G solvation = -31326.823602 eV Core-core repulsion = 27229.648958 eV Total energy + Delta-G solvation = -4097.174644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.08547 -40.40798 -38.84601 -35.92034 -35.29488 -33.87434 -33.40772 -32.19322 -31.11057 -29.89369 -29.16333 -28.83008 -27.37562 -26.35847 -25.03525 -22.89403 -22.26372 -21.17336 -20.78151 -20.35082 -20.02794 -17.96784 -17.75379 -17.17373 -16.98408 -16.84802 -15.97130 -15.69171 -15.36149 -14.72532 -14.50463 -14.27796 -14.10572 -13.79458 -13.70462 -13.61984 -13.38238 -13.23610 -13.18837 -12.85965 -12.67230 -12.59407 -12.41079 -12.21268 -12.14998 -11.91580 -11.51997 -11.30757 -11.16750 -10.98193 -10.96910 -10.74314 -10.47819 -10.18426 -10.05414 -9.99954 -9.85715 -9.81059 -9.43162 -9.34875 -9.28697 -8.98933 -8.62265 -6.83382 -5.69670 -3.07928 1.26933 1.97635 2.55074 2.88778 3.22888 3.37865 3.43071 3.44997 3.96215 4.20897 4.44682 4.47544 4.59623 4.73340 4.92842 4.94824 4.97156 4.99523 5.02734 5.12023 5.19707 5.24097 5.31683 5.36256 5.38643 5.45385 5.46887 5.49596 5.50621 5.68446 5.70507 5.78486 5.84797 5.92276 5.93497 6.00435 6.19654 6.28056 6.35791 6.41221 6.53275 6.62387 6.68396 6.76502 6.88086 6.94868 7.47139 7.54155 7.64103 7.84540 8.11411 8.17071 8.31929 9.21649 9.82484 10.46619 11.36859 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.002120 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.836354 B =13203.582933 C =13658.872256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.018 4.018 6 C -0.074 4.074 7 C -0.182 4.182 8 C -0.065 4.065 9 C 0.512 3.488 10 O -0.536 6.536 11 N -0.720 5.720 12 C 0.153 3.847 13 H 0.084 0.916 14 C -0.116 4.116 15 C -0.100 4.100 16 C -0.104 4.104 17 H 0.056 0.944 18 C 0.171 3.829 19 N -0.604 5.604 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.141 3.859 29 C -0.086 4.086 30 H 0.062 0.938 31 C -0.113 4.113 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.087 0.913 47 H 0.252 0.748 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 16.738 10.957 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.186 4.186 8 C -0.105 4.105 9 C 0.297 3.703 10 O -0.412 6.412 11 N -0.374 5.374 12 C 0.049 3.951 13 H 0.102 0.898 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.123 4.123 17 H 0.074 0.926 18 C 0.047 3.953 19 N -0.330 5.330 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.014 3.986 29 C -0.106 4.106 30 H 0.080 0.920 31 C -0.150 4.150 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.105 0.895 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.040 0.960 50 H 0.084 0.916 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.907 18.469 10.148 23.286 hybrid contribution -0.474 -2.056 0.085 2.112 sum 9.433 16.413 10.233 21.520 Atomic orbital electron populations 1.20166 0.86072 1.04033 1.03121 1.23357 0.98821 0.88365 1.01929 1.73809 0.89240 1.23884 1.20671 1.84782 1.21686 1.22357 1.68036 1.24165 0.98069 0.83903 1.02065 1.20350 0.90085 0.98392 1.04354 1.20195 0.91857 0.95936 1.10640 1.19915 1.04572 0.90492 0.95520 1.20432 0.76778 0.82176 0.90915 1.90717 1.49654 1.54780 1.46060 1.46357 1.70180 1.11235 1.09631 1.20592 0.97219 0.95288 0.82006 0.89803 1.20767 0.94501 0.98887 1.01272 1.19824 0.97634 0.94825 1.01475 1.21066 0.95278 0.96259 0.99746 0.92554 1.21686 0.97766 0.83017 0.92868 1.44288 1.27231 1.02661 1.58816 1.19058 1.08333 0.81474 1.26438 0.90544 1.24794 0.97833 0.97884 1.00118 1.69893 1.16734 1.31229 1.39181 0.86101 0.77740 0.84460 0.77367 1.21622 1.21679 1.20744 1.21267 0.92313 0.90263 0.94722 1.21459 0.95489 0.96485 0.97128 0.91962 1.21776 0.98952 0.92455 1.01854 0.90152 0.90457 0.90103 0.89172 0.89809 0.89179 0.87499 0.87604 0.76336 0.91870 0.92448 0.91995 0.93632 0.96662 0.89469 0.93777 0.96279 0.95952 0.91590 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.01 0.37 -0.30 16 2 C 0.03 0.40 7.33 -82.10 -0.60 -0.20 16 3 N -0.37 -4.86 12.07 33.42 0.40 -4.45 16 4 O 0.09 1.14 11.20 17.16 0.19 1.33 16 5 C -0.02 -0.18 7.49 -35.31 -0.26 -0.45 16 6 C -0.07 -0.44 10.30 36.01 0.37 -0.07 16 7 C -0.18 -1.87 4.81 -104.42 -0.50 -2.38 16 8 C -0.06 -0.51 6.03 -29.03 -0.18 -0.68 16 9 C 0.51 5.64 7.57 -10.98 -0.08 5.55 16 10 O -0.54 -8.16 15.68 5.57 0.09 -8.07 16 11 N -0.72 -7.39 4.90 -54.76 -0.27 -7.66 16 12 C 0.15 1.89 2.77 -68.91 -0.19 1.70 16 13 H 0.08 1.12 7.55 -51.93 -0.39 0.72 16 14 C -0.12 -1.55 5.46 -29.46 -0.16 -1.71 16 15 C -0.10 -1.49 5.40 -30.42 -0.16 -1.66 16 16 C -0.10 -1.78 2.85 -92.08 -0.26 -2.05 16 17 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 18 C 0.17 3.96 4.90 -3.21 -0.02 3.95 16 19 N -0.60 -14.85 3.39 -171.38 -0.58 -15.44 16 20 C -0.22 -6.12 10.25 -15.06 -0.15 -6.28 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 23 N -0.92 -26.51 10.18 55.49 0.56 -25.95 16 24 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 C 0.14 2.72 6.85 -3.39 -0.02 2.69 16 29 C -0.09 -1.30 2.72 -90.44 -0.25 -1.54 16 30 H 0.06 0.76 6.16 -51.93 -0.32 0.44 16 31 C -0.11 -1.51 4.71 -26.91 -0.13 -1.64 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.37 7.44 -51.93 -0.39 -0.02 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.54 7.44 -51.93 -0.39 0.15 16 40 H 0.40 3.39 6.44 -40.82 -0.26 3.13 16 41 H 0.06 0.85 8.12 -51.93 -0.42 0.42 16 42 H 0.06 0.78 7.76 -51.93 -0.40 0.37 16 43 H 0.06 1.02 7.20 -51.93 -0.37 0.65 16 44 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.02 0.39 7.69 -51.93 -0.40 -0.01 16 46 H 0.09 2.32 6.25 -51.93 -0.32 1.99 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.02 0.43 7.71 -51.93 -0.40 0.03 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -33.79 398.99 -9.20 -42.99 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.26 Total: -0.08 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.32 Total: -5.44 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.12 Total: -53.49 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.28 Total: -6.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.79 -9.20 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980251417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.551 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds