Wall clock time and date at job start Wed Apr 1 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30179 * 126.80302 * 2 1 4 4 O 1.20918 * 111.60535 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.56512 * 359.76580 * 4 3 2 6 6 C 1.50700 * 126.77329 * 180.28521 * 5 4 3 7 7 C 1.35445 * 106.44536 * 0.38067 * 5 4 3 8 8 C 1.50703 * 128.00660 * 179.91463 * 7 5 4 9 9 C 1.50706 * 109.46796 * 269.67680 * 8 7 5 10 10 O 1.21270 * 119.99907 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99586 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99681 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.26680 * 34.50722 * 12 11 9 14 14 C 1.51202 * 109.26924 * 274.99944 * 12 11 9 15 15 C 1.49307 * 116.94576 * 272.63132 * 14 12 11 16 16 C 1.49195 * 121.14020 * 359.73419 * 15 14 12 17 17 H 1.09004 * 108.41754 * 122.31777 * 16 15 14 18 18 C 1.54192 * 111.21869 * 240.34280 * 16 15 14 19 19 N 1.46883 * 106.35537 * 154.09867 * 18 16 15 20 20 C 1.36940 * 125.36346 * 162.42126 * 19 18 16 21 21 H 1.08002 * 119.99515 * 179.69295 * 20 19 18 22 22 C 1.38806 * 120.00496 * 359.69663 * 20 19 18 23 23 N 1.31624 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00280 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47423 * 89.99600 * 24 22 20 26 26 H 1.48505 * 109.46917 * 209.99715 * 24 22 20 27 27 H 1.48495 * 109.46829 * 329.99500 * 24 22 20 28 28 C 1.46796 * 109.26747 * 342.15529 * 19 18 16 29 29 C 1.52595 * 116.85318 * 359.63570 * 16 15 14 30 30 H 1.08998 * 110.47160 * 91.64206 * 29 16 15 31 31 C 1.52798 * 110.38428 * 328.35482 * 29 16 15 32 32 H 1.08999 * 109.46945 * 270.02240 * 1 2 3 33 33 H 1.09004 * 109.47061 * 30.02031 * 1 2 3 34 34 H 1.08997 * 109.47403 * 150.02156 * 1 2 3 35 35 H 1.08997 * 109.47113 * 270.10883 * 6 5 4 36 36 H 1.08999 * 109.47436 * 30.11288 * 6 5 4 37 37 H 1.09006 * 109.46616 * 150.11247 * 6 5 4 38 38 H 1.08990 * 109.47287 * 149.67347 * 8 7 5 39 39 H 1.09004 * 109.47100 * 29.67244 * 8 7 5 40 40 H 0.97000 * 120.00014 * 0.02562 * 11 9 8 41 41 H 1.08996 * 107.95342 * 150.74239 * 14 12 11 42 42 H 1.09001 * 107.92192 * 34.48889 * 14 12 11 43 43 H 1.08995 * 107.08034 * 236.73644 * 15 14 12 44 44 H 1.09000 * 107.07991 * 122.73317 * 15 14 12 45 45 H 1.08997 * 110.07417 * 34.87086 * 18 16 15 46 46 H 1.09001 * 110.07285 * 273.32314 * 18 16 15 47 47 H 0.97002 * 119.99788 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.83067 * 120.55245 * 28 19 18 49 49 H 1.08997 * 109.82969 * 241.53186 * 28 19 18 50 50 H 1.09003 * 109.83975 * 183.67583 * 31 29 16 51 51 H 1.08991 * 109.84426 * 304.65173 * 31 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6068 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3539 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0014 9 6 1.8272 -3.0720 -1.4191 10 8 2.0331 -2.3119 -2.3413 11 7 1.4804 -4.3511 -1.6646 12 6 1.3528 -4.8233 -3.0454 13 1 2.0933 -4.3204 -3.6674 14 6 -0.0323 -4.4988 -3.5578 15 6 -1.1048 -5.5028 -3.2910 16 6 -0.8117 -6.7682 -2.5570 17 1 -1.4568 -6.8146 -1.6795 18 6 -1.1217 -8.0027 -3.4272 19 7 -0.2625 -9.0854 -2.9301 20 6 -0.4462 -10.4198 -3.1771 21 1 0.2442 -11.1441 -2.7707 22 6 -1.5195 -10.8414 -3.9497 23 7 -2.3611 -9.9586 -4.4446 24 14 -1.7704 -12.6617 -4.2860 25 1 -2.6252 -13.2483 -3.2229 26 1 -2.4313 -12.8350 -5.6045 27 1 -0.4540 -13.3488 -4.2980 28 6 0.8276 -8.5111 -2.1322 29 6 0.6295 -6.9848 -2.1048 30 1 0.7743 -6.5996 -1.0955 31 6 1.5997 -6.3312 -3.0878 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8901 -0.5135 35 1 5.2208 -1.5555 -1.0113 36 1 5.6633 -0.7849 0.5310 37 1 4.7623 -2.3200 0.5293 38 1 1.0051 -2.7035 0.5155 39 1 2.7228 -3.1700 0.5155 40 1 1.3153 -4.9589 -0.9269 41 1 0.0334 -4.3558 -4.6363 42 1 -0.3406 -3.5520 -3.1144 43 1 -1.5281 -5.7829 -4.2556 44 1 -1.8943 -4.9896 -2.7420 45 1 -0.8916 -7.7917 -4.4715 46 1 -2.1708 -8.2798 -3.3233 47 1 -3.1114 -10.2533 -4.9842 48 1 0.7913 -8.9071 -1.1173 49 1 1.7872 -8.7513 -2.5901 50 1 2.6266 -6.5464 -2.7924 51 1 1.4166 -6.7080 -4.0940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980251417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:10 Heat of formation + Delta-G solvation = 17.653693 kcal Electronic energy + Delta-G solvation = -31327.730217 eV Core-core repulsion = 27229.648958 eV Total energy + Delta-G solvation = -4098.081258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.87023 -41.49200 -40.02299 -37.21640 -36.16654 -34.78320 -34.55807 -33.79234 -32.22756 -31.19827 -30.28589 -29.56636 -28.15692 -27.68448 -26.86831 -23.98991 -23.41458 -22.34310 -22.04027 -21.48000 -20.94819 -18.94516 -18.81351 -18.77235 -17.99939 -17.78655 -17.19091 -16.87649 -16.56180 -16.06848 -15.63882 -15.39123 -15.13704 -15.08410 -14.61134 -14.49439 -14.27778 -14.26044 -13.89918 -13.84126 -13.79060 -13.71218 -13.44721 -13.37556 -13.08092 -12.97035 -12.90357 -12.77753 -12.67637 -12.62523 -12.29367 -12.04572 -11.87096 -11.82991 -11.65702 -11.20506 -11.04979 -10.89677 -10.80206 -10.68733 -10.62644 -10.02989 -9.94773 -8.82922 -7.78144 -5.18147 0.53754 1.20545 1.46610 1.48032 1.56640 1.74856 2.22736 2.41492 2.51198 3.26059 3.34413 3.56342 3.67505 3.70572 3.79484 3.81009 3.85384 3.97704 4.13463 4.14929 4.21026 4.37872 4.40186 4.46575 4.51267 4.57683 4.64292 4.65927 4.69431 4.72281 4.76330 4.81620 4.84256 4.95055 4.95950 5.02219 5.10850 5.15588 5.16303 5.20518 5.23753 5.32539 5.42326 5.46694 5.55598 5.61472 5.67350 5.75927 5.90342 6.30979 6.69098 7.14966 7.34796 7.38071 7.85038 8.46430 9.26422 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027721 B = 0.002120 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.836354 B =13203.582933 C =13658.872256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 N -0.406 5.406 4 O 0.076 5.924 5 C -0.020 4.020 6 C -0.075 4.075 7 C -0.196 4.196 8 C -0.057 4.057 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.709 5.709 12 C 0.164 3.836 13 H 0.078 0.922 14 C -0.110 4.110 15 C -0.090 4.090 16 C -0.087 4.087 17 H 0.060 0.940 18 C 0.179 3.821 19 N -0.627 5.627 20 C -0.236 4.236 21 H 0.082 0.918 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.132 3.868 29 C -0.073 4.073 30 H 0.108 0.892 31 C -0.104 4.104 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.413 0.587 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.060 0.940 45 H -0.020 1.020 46 H 0.045 0.955 47 H 0.244 0.756 48 H 0.029 0.971 49 H 0.026 0.974 50 H 0.089 0.911 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 16.499 13.451 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 N -0.116 5.116 4 O 0.015 5.985 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.200 4.200 8 C -0.097 4.097 9 C 0.302 3.698 10 O -0.461 6.461 11 N -0.363 5.363 12 C 0.059 3.941 13 H 0.096 0.904 14 C -0.148 4.148 15 C -0.128 4.128 16 C -0.107 4.107 17 H 0.078 0.922 18 C 0.054 3.946 19 N -0.353 5.353 20 C -0.365 4.365 21 H 0.100 0.900 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.194 1.194 28 C 0.007 3.993 29 C -0.092 4.092 30 H 0.126 0.874 31 C -0.142 4.142 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.252 0.748 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.079 0.921 45 H -0.002 1.002 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.044 0.956 50 H 0.108 0.892 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.535 18.217 12.690 25.019 hybrid contribution -0.936 -1.999 -0.708 2.318 sum 10.598 16.217 11.983 22.780 Atomic orbital electron populations 1.20259 0.84674 1.03966 1.04437 1.23928 1.00040 0.88772 1.01136 1.73794 0.89898 1.25238 1.22671 1.84729 1.21426 1.23778 1.68532 1.24944 0.99720 0.83211 1.00518 1.20571 0.88625 0.99221 1.04760 1.20542 0.91658 0.96909 1.10905 1.20023 1.07112 0.89086 0.93486 1.20949 0.75408 0.81603 0.91791 1.90717 1.51644 1.55921 1.47800 1.46169 1.69790 1.11434 1.08892 1.20302 0.96138 0.94291 0.83379 0.90359 1.20695 0.94723 0.98238 1.01173 1.19720 0.98705 0.94314 1.00103 1.20889 0.97081 0.94251 0.98486 0.92185 1.21415 0.95409 0.85440 0.92359 1.44622 1.29038 1.02294 1.59366 1.19460 1.08082 0.83182 1.25801 0.90033 1.25631 0.98040 1.01918 1.00685 1.70161 1.17112 1.32830 1.39986 0.85097 0.77911 0.79852 0.76616 1.21212 1.22412 1.19409 1.21540 0.90726 0.92926 0.94110 1.21462 0.94011 0.93803 0.99877 0.87437 1.21668 0.99776 0.92842 0.99888 0.88077 0.91090 0.89547 0.89374 0.88249 0.86619 0.85051 0.83985 0.74787 0.92474 0.92014 0.94411 0.92079 1.00231 0.93632 0.94610 0.95316 0.95566 0.89241 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.39 71.24 0.74 -0.49 16 2 C 0.02 0.44 7.33 43.58 0.32 0.76 16 3 N -0.41 -10.66 12.07 -49.55 -0.60 -11.26 16 4 O 0.08 1.80 11.20 71.56 0.80 2.60 16 5 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.07 -0.66 10.30 71.24 0.73 0.07 16 7 C -0.20 -3.55 4.81 -19.74 -0.10 -3.65 16 8 C -0.06 -0.65 6.03 29.10 0.18 -0.47 16 9 C 0.51 9.51 7.57 87.66 0.66 10.17 16 10 O -0.58 -16.53 15.68 -3.00 -0.05 -16.57 16 11 N -0.71 -11.55 4.90 -445.56 -2.18 -13.74 16 12 C 0.16 3.63 2.77 44.36 0.12 3.75 16 13 H 0.08 1.92 7.55 -2.39 -0.02 1.90 16 14 C -0.11 -2.76 5.46 28.83 0.16 -2.61 16 15 C -0.09 -2.63 5.40 28.20 0.15 -2.48 16 16 C -0.09 -2.91 2.85 -11.74 -0.03 -2.94 16 17 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 18 C 0.18 8.55 4.90 86.71 0.43 8.98 16 19 N -0.63 -31.10 3.39 -696.13 -2.36 -33.46 16 20 C -0.24 -12.99 10.25 84.03 0.86 -12.13 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 22 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 23 N -0.95 -56.93 10.18 21.65 0.22 -56.71 16 24 Si 0.98 45.42 29.55 68.60 2.03 47.44 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C 0.13 4.84 6.85 86.64 0.59 5.44 16 29 C -0.07 -1.97 2.72 -10.68 -0.03 -2.00 16 30 H 0.11 2.02 6.16 -2.39 -0.01 2.01 16 31 C -0.10 -2.53 4.71 30.48 0.14 -2.39 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.42 7.44 -2.38 -0.02 0.40 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.14 0.59 7.44 -2.38 -0.02 0.57 16 40 H 0.41 4.63 6.44 -92.71 -0.60 4.03 16 41 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 42 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 43 H 0.04 1.28 7.20 -2.39 -0.02 1.26 16 44 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 45 H -0.02 -1.09 7.69 -2.39 -0.02 -1.11 16 46 H 0.05 2.55 6.25 -2.39 -0.01 2.53 16 47 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.03 0.96 7.71 -2.39 -0.02 0.94 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.62 398.99 3.79 -74.83 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.34 Total: 10.53 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.58 Total: -3.67 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -4.92 Total: -115.17 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.75 Total: -13.97 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -78.62 3.79 -74.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980251417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.482 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds