Wall clock time and date at job start Wed Apr 1 2020 04:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30173 * 126.80346 * 2 1 4 4 O 1.20915 * 111.60321 * 180.25198 * 3 2 1 5 5 C 1.34043 * 111.57071 * 359.74673 * 4 3 2 6 6 C 1.50698 * 126.77976 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44390 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00753 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47028 * 0.02562 * 8 7 5 10 10 C 1.53000 * 109.46754 * 120.00367 * 8 7 5 11 11 C 1.50699 * 109.47243 * 240.00380 * 8 7 5 12 12 O 1.21276 * 120.00236 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99894 * 180.02562 * 11 8 7 14 14 C 1.47670 * 134.45503 * 180.02562 * 13 11 8 15 15 C 1.53445 * 85.97550 * 155.70814 * 14 13 11 16 16 C 1.47674 * 134.45181 * 359.97438 * 13 11 8 17 17 C 1.52633 * 113.71483 * 268.85605 * 15 14 13 18 18 C 1.53183 * 109.35298 * 171.27226 * 17 15 14 19 19 C 1.52669 * 109.42857 * 58.92887 * 18 17 15 20 20 N 1.46902 * 109.34308 * 303.76841 * 19 18 17 21 21 C 1.36944 * 120.68830 * 235.31177 * 20 19 18 22 22 H 1.08001 * 119.99828 * 151.86347 * 21 20 19 23 23 C 1.38803 * 119.99932 * 331.86393 * 21 20 19 24 24 N 1.31619 * 120.00435 * 335.05172 * 23 21 20 25 25 Si 1.86799 * 120.00223 * 155.05291 * 23 21 20 26 26 H 1.48500 * 109.47410 * 89.99697 * 25 23 21 27 27 H 1.48495 * 109.47627 * 209.99922 * 25 23 21 28 28 H 1.48507 * 109.46931 * 329.99818 * 25 23 21 29 29 C 1.47119 * 118.62047 * 55.03887 * 20 19 18 30 30 H 1.09006 * 109.46768 * 270.16668 * 1 2 3 31 31 H 1.08991 * 109.46674 * 30.16325 * 1 2 3 32 32 H 1.08997 * 109.47039 * 150.16691 * 1 2 3 33 33 H 1.09001 * 109.46771 * 270.00202 * 6 5 4 34 34 H 1.09001 * 109.47157 * 29.99358 * 6 5 4 35 35 H 1.09000 * 109.47178 * 149.99751 * 6 5 4 36 36 H 1.09008 * 109.47122 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47111 * 299.99872 * 10 8 7 38 38 H 1.08998 * 109.47639 * 60.00387 * 10 8 7 39 39 H 1.09001 * 113.78847 * 41.44829 * 14 13 11 40 40 H 1.09000 * 113.90159 * 269.98839 * 14 13 11 41 41 H 1.09000 * 113.79087 * 90.02906 * 16 13 11 42 42 H 1.09000 * 113.79445 * 318.55302 * 16 13 11 43 43 H 1.09008 * 109.48858 * 291.23484 * 17 15 14 44 44 H 1.08998 * 109.49590 * 51.30343 * 17 15 14 45 45 H 1.08999 * 109.49054 * 179.01805 * 18 17 15 46 46 H 1.08997 * 109.49040 * 299.09174 * 18 17 15 47 47 H 1.08998 * 109.44336 * 183.78885 * 19 18 17 48 48 H 1.08998 * 109.37503 * 63.70665 * 19 18 17 49 49 H 0.97001 * 119.99673 * 354.26202 * 24 23 21 50 50 H 1.09000 * 109.63362 * 68.58036 * 29 20 19 51 51 H 1.09001 * 109.63332 * 189.19041 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6069 -0.0035 6 6 4.9022 -1.3697 -0.0088 7 6 2.3540 -1.1321 0.0038 8 6 1.9591 -2.5864 0.0078 9 1 2.8556 -3.2064 0.0042 10 6 1.1359 -2.8879 1.2617 11 6 1.1354 -2.8866 -1.2180 12 8 0.8933 -2.0065 -2.0165 13 7 0.6678 -4.1333 -1.4269 14 6 -0.1447 -4.7696 -2.4832 15 6 0.5143 -6.0850 -2.0471 16 6 0.7635 -5.4105 -0.6918 17 6 1.7937 -6.4136 -2.8120 18 6 2.4808 -7.6167 -2.1586 19 6 1.5311 -8.8120 -2.1701 20 7 0.2776 -8.4441 -1.4983 21 6 -0.1943 -9.1827 -0.4462 22 1 -0.8049 -8.7143 0.3116 23 6 0.1120 -10.5333 -0.3536 24 7 0.4052 -11.2176 -1.4390 25 14 0.1083 -11.3800 1.3115 26 1 -1.2461 -11.9226 1.5880 27 1 1.0944 -12.4902 1.3047 28 1 0.4736 -10.4000 2.3659 29 6 -0.4570 -7.2621 -1.9754 30 1 -0.3633 0.0030 1.0277 31 1 -0.3632 0.8885 -0.5163 32 1 -0.3633 -0.8915 -0.5112 33 1 5.2102 -1.5552 -1.0378 34 1 5.6687 -0.7851 0.5000 35 1 4.7677 -2.3202 0.5073 36 1 0.8506 -3.9400 1.2649 37 1 1.7317 -2.6708 2.1483 38 1 0.2394 -2.2680 1.2657 39 1 0.1233 -4.4570 -3.4924 40 1 -1.2181 -4.7327 -2.2971 41 1 -0.0390 -5.5637 0.0298 42 1 1.7528 -5.6068 -0.2783 43 1 1.5475 -6.6530 -3.8466 44 1 2.4636 -5.5542 -2.7867 45 1 3.3857 -7.8643 -2.7135 46 1 2.7408 -7.3720 -1.1287 47 1 1.9938 -9.6481 -1.6458 48 1 1.3219 -9.0976 -3.2010 49 1 0.3265 -10.8006 -2.3112 50 1 -0.8661 -7.4604 -2.9661 51 1 -1.2651 -7.0287 -1.2822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982069209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:14 Heat of formation + Delta-G solvation = 70.629424 kcal Electronic energy + Delta-G solvation = -32108.434286 eV Core-core repulsion = 28012.650228 eV Total energy + Delta-G solvation = -4095.784058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.01723 -40.80401 -38.76097 -36.19945 -35.65553 -33.91868 -32.97209 -32.21142 -30.72877 -29.71429 -28.82812 -27.80953 -26.23921 -26.17767 -25.26481 -24.65971 -22.42074 -22.05444 -20.67209 -20.28519 -19.09136 -18.03221 -17.77449 -17.42954 -17.10450 -16.76946 -15.85527 -15.71280 -14.89833 -14.53671 -14.36479 -14.14963 -13.95420 -13.72344 -13.59792 -13.56832 -13.39225 -13.26403 -13.16566 -13.05367 -12.89109 -12.65003 -12.46477 -12.33216 -12.16640 -11.85752 -11.82001 -11.78318 -11.42486 -11.11051 -10.94935 -10.77546 -10.51409 -10.31026 -10.14035 -10.07569 -9.93515 -9.87881 -9.64852 -9.33908 -9.23494 -8.62029 -8.42566 -6.95578 -6.14156 -3.31488 1.32456 2.09006 2.59341 2.86892 3.00446 3.44601 3.47802 3.62781 4.03588 4.25735 4.30804 4.43995 4.59052 4.62004 4.67508 4.87482 4.97397 5.04337 5.10289 5.12758 5.15508 5.23455 5.28438 5.37796 5.40884 5.46668 5.46752 5.52723 5.54352 5.58684 5.62294 5.64883 5.69811 5.73710 5.80217 5.86437 5.86848 5.91025 6.07758 6.11869 6.22833 6.34649 6.40060 6.51341 6.59195 6.64112 6.99762 7.13215 7.74825 7.91187 8.15525 8.20517 8.50102 9.02665 9.76280 10.20781 11.14390 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002652 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.218132 B =10556.287543 C =10733.661164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.373 5.373 4 O 0.094 5.906 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.179 4.179 8 C -0.026 4.026 9 H 0.106 0.894 10 C -0.145 4.145 11 C 0.538 3.462 12 O -0.540 6.540 13 N -0.638 5.638 14 C 0.115 3.885 15 C -0.102 4.102 16 C 0.121 3.879 17 C -0.083 4.083 18 C -0.135 4.135 19 C 0.148 3.852 20 N -0.595 5.595 21 C -0.350 4.350 22 H 0.056 0.944 23 C -0.022 4.022 24 N -0.915 5.915 25 Si 1.064 2.936 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.292 1.292 29 C 0.164 3.836 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.016 0.984 49 H 0.270 0.730 50 H 0.022 0.978 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 16.331 3.361 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.081 5.081 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.132 4.132 7 C -0.183 4.183 8 C -0.047 4.047 9 H 0.123 0.877 10 C -0.202 4.202 11 C 0.327 3.673 12 O -0.417 6.417 13 N -0.373 5.373 14 C -0.008 4.008 15 C -0.105 4.105 16 C -0.001 4.001 17 C -0.121 4.121 18 C -0.175 4.175 19 C 0.022 3.978 20 N -0.319 5.319 21 C -0.479 4.479 22 H 0.074 0.926 23 C -0.224 4.224 24 N -0.554 5.554 25 Si 0.893 3.107 26 H -0.222 1.222 27 H -0.212 1.212 28 H -0.219 1.219 29 C 0.037 3.963 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.034 0.966 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.554 16.867 3.783 18.156 hybrid contribution -0.482 0.715 -0.818 1.189 sum 5.072 17.583 2.964 18.538 Atomic orbital electron populations 1.20245 0.86272 1.04417 1.02471 1.23235 0.98764 0.88001 1.00650 1.73799 0.89206 1.23864 1.21208 1.84779 1.21768 1.22156 1.68241 1.24163 0.97911 0.84096 1.03064 1.20357 0.90084 0.98553 1.04228 1.20303 0.91834 0.95901 1.10234 1.19432 0.99780 0.90818 0.94716 0.87654 1.21843 1.00091 1.02887 0.95410 1.20020 0.80103 0.80452 0.86723 1.90697 1.59570 1.44546 1.46934 1.50147 1.52423 1.07907 1.26848 1.23227 0.95771 0.89254 0.92509 1.22582 0.98092 0.94855 0.94929 1.23271 1.02395 0.78373 0.96050 1.21112 0.94460 0.97904 0.98575 1.21989 0.98435 0.97013 1.00026 1.20845 0.86300 0.95140 0.95501 1.44093 1.20627 1.29439 1.37706 1.19922 1.35226 0.92316 1.00431 0.92624 1.25809 0.99528 0.92871 1.04239 1.70754 1.48404 1.37734 0.98543 0.83561 0.76559 0.75662 0.74870 1.22191 1.21211 1.21865 1.20774 0.92014 0.86113 0.97439 0.90683 0.90774 0.89495 0.89355 0.89694 0.89060 0.90824 0.91233 0.91795 0.90459 0.89769 0.89353 0.90168 0.92093 0.93130 0.92872 0.92359 0.90139 0.96631 0.91913 0.96011 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 8.93 36.01 0.32 -0.58 16 2 C 0.05 0.72 6.69 -82.10 -0.55 0.17 16 3 N -0.37 -5.44 12.07 33.42 0.40 -5.03 16 4 O 0.09 1.22 11.20 17.17 0.19 1.42 16 5 C -0.03 -0.32 7.49 -35.30 -0.26 -0.58 16 6 C -0.07 -0.51 10.17 36.00 0.37 -0.14 16 7 C -0.18 -2.21 4.47 -104.42 -0.47 -2.67 16 8 C -0.03 -0.29 2.85 -92.92 -0.27 -0.55 16 9 H 0.11 1.00 7.13 -51.93 -0.37 0.63 16 10 C -0.14 -1.38 8.98 37.16 0.33 -1.05 16 11 C 0.54 7.49 6.66 -10.99 -0.07 7.42 16 12 O -0.54 -9.31 14.69 5.56 0.08 -9.23 16 13 N -0.64 -8.42 3.41 -180.47 -0.62 -9.04 16 14 C 0.11 1.52 7.97 -3.18 -0.03 1.49 16 15 C -0.10 -1.48 0.87 -154.45 -0.13 -1.62 16 16 C 0.12 1.59 5.86 -3.18 -0.02 1.57 16 17 C -0.08 -1.22 5.02 -26.82 -0.13 -1.35 16 18 C -0.14 -2.24 5.99 -26.81 -0.16 -2.40 16 19 C 0.15 3.12 4.62 -3.99 -0.02 3.10 16 20 N -0.60 -13.19 2.86 -172.75 -0.49 -13.68 16 21 C -0.35 -8.86 9.50 -15.06 -0.14 -9.00 16 22 H 0.06 1.41 7.94 -52.49 -0.42 0.99 16 23 C -0.02 -0.58 4.69 -17.43 -0.08 -0.67 16 24 N -0.91 -25.89 12.38 55.49 0.69 -25.20 16 25 Si 1.06 23.68 29.99 -169.99 -5.10 18.58 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 29 C 0.16 2.95 5.71 -3.81 -0.02 2.93 16 30 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.11 5.79 -51.93 -0.30 0.81 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.50 7.39 -51.93 -0.38 0.11 16 36 H 0.07 0.69 6.12 -51.92 -0.32 0.37 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 6.76 -51.93 -0.35 0.27 16 39 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 41 H 0.09 1.16 7.79 -51.93 -0.40 0.75 16 42 H 0.08 1.03 7.36 -51.93 -0.38 0.64 16 43 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.05 0.70 8.02 -51.93 -0.42 0.29 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.97 7.36 -51.93 -0.38 0.59 16 47 H 0.08 1.95 6.23 -51.93 -0.32 1.62 16 48 H 0.02 0.34 7.94 -51.93 -0.41 -0.07 16 49 H 0.27 7.69 6.77 -40.82 -0.28 7.42 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -31.53 396.06 -8.37 -39.89 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.16 Total: 0.25 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.34 Total: -3.93 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.02 Total: -52.95 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.27 Total: -7.82 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.10 Total: 18.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.53 -8.37 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982069209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.523 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds