Wall clock time and date at job start Wed Apr 1 2020 04:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30173 * 126.80346 * 2 1 4 4 O 1.20915 * 111.60321 * 180.25198 * 3 2 1 5 5 C 1.34043 * 111.57071 * 359.74673 * 4 3 2 6 6 C 1.50698 * 126.77976 * 179.97438 * 5 4 3 7 7 C 1.35449 * 106.44390 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00753 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47028 * 0.02562 * 8 7 5 10 10 C 1.53000 * 109.46754 * 120.00367 * 8 7 5 11 11 C 1.50699 * 109.47243 * 240.00380 * 8 7 5 12 12 O 1.21276 * 120.00236 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99894 * 180.02562 * 11 8 7 14 14 C 1.47670 * 134.45503 * 180.02562 * 13 11 8 15 15 C 1.53445 * 85.97550 * 155.70814 * 14 13 11 16 16 C 1.47674 * 134.45181 * 359.97438 * 13 11 8 17 17 C 1.52633 * 113.71483 * 268.85605 * 15 14 13 18 18 C 1.53183 * 109.35298 * 171.27226 * 17 15 14 19 19 C 1.52669 * 109.42857 * 58.92887 * 18 17 15 20 20 N 1.46902 * 109.34308 * 303.76841 * 19 18 17 21 21 C 1.36944 * 120.68830 * 235.31177 * 20 19 18 22 22 H 1.08001 * 119.99828 * 151.86347 * 21 20 19 23 23 C 1.38803 * 119.99932 * 331.86393 * 21 20 19 24 24 N 1.31619 * 120.00435 * 335.05172 * 23 21 20 25 25 Si 1.86799 * 120.00223 * 155.05291 * 23 21 20 26 26 H 1.48500 * 109.47410 * 89.99697 * 25 23 21 27 27 H 1.48495 * 109.47627 * 209.99922 * 25 23 21 28 28 H 1.48507 * 109.46931 * 329.99818 * 25 23 21 29 29 C 1.47119 * 118.62047 * 55.03887 * 20 19 18 30 30 H 1.09006 * 109.46768 * 270.16668 * 1 2 3 31 31 H 1.08991 * 109.46674 * 30.16325 * 1 2 3 32 32 H 1.08997 * 109.47039 * 150.16691 * 1 2 3 33 33 H 1.09001 * 109.46771 * 270.00202 * 6 5 4 34 34 H 1.09001 * 109.47157 * 29.99358 * 6 5 4 35 35 H 1.09000 * 109.47178 * 149.99751 * 6 5 4 36 36 H 1.09008 * 109.47122 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47111 * 299.99872 * 10 8 7 38 38 H 1.08998 * 109.47639 * 60.00387 * 10 8 7 39 39 H 1.09001 * 113.78847 * 41.44829 * 14 13 11 40 40 H 1.09000 * 113.90159 * 269.98839 * 14 13 11 41 41 H 1.09000 * 113.79087 * 90.02906 * 16 13 11 42 42 H 1.09000 * 113.79445 * 318.55302 * 16 13 11 43 43 H 1.09008 * 109.48858 * 291.23484 * 17 15 14 44 44 H 1.08998 * 109.49590 * 51.30343 * 17 15 14 45 45 H 1.08999 * 109.49054 * 179.01805 * 18 17 15 46 46 H 1.08997 * 109.49040 * 299.09174 * 18 17 15 47 47 H 1.08998 * 109.44336 * 183.78885 * 19 18 17 48 48 H 1.08998 * 109.37503 * 63.70665 * 19 18 17 49 49 H 0.97001 * 119.99673 * 354.26202 * 24 23 21 50 50 H 1.09000 * 109.63362 * 68.58036 * 29 20 19 51 51 H 1.09001 * 109.63332 * 189.19041 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6069 -0.0035 6 6 4.9022 -1.3697 -0.0088 7 6 2.3540 -1.1321 0.0038 8 6 1.9591 -2.5864 0.0078 9 1 2.8556 -3.2064 0.0042 10 6 1.1359 -2.8879 1.2617 11 6 1.1354 -2.8866 -1.2180 12 8 0.8933 -2.0065 -2.0165 13 7 0.6678 -4.1333 -1.4269 14 6 -0.1447 -4.7696 -2.4832 15 6 0.5143 -6.0850 -2.0471 16 6 0.7635 -5.4105 -0.6918 17 6 1.7937 -6.4136 -2.8120 18 6 2.4808 -7.6167 -2.1586 19 6 1.5311 -8.8120 -2.1701 20 7 0.2776 -8.4441 -1.4983 21 6 -0.1943 -9.1827 -0.4462 22 1 -0.8049 -8.7143 0.3116 23 6 0.1120 -10.5333 -0.3536 24 7 0.4052 -11.2176 -1.4390 25 14 0.1083 -11.3800 1.3115 26 1 -1.2461 -11.9226 1.5880 27 1 1.0944 -12.4902 1.3047 28 1 0.4736 -10.4000 2.3659 29 6 -0.4570 -7.2621 -1.9754 30 1 -0.3633 0.0030 1.0277 31 1 -0.3632 0.8885 -0.5163 32 1 -0.3633 -0.8915 -0.5112 33 1 5.2102 -1.5552 -1.0378 34 1 5.6687 -0.7851 0.5000 35 1 4.7677 -2.3202 0.5073 36 1 0.8506 -3.9400 1.2649 37 1 1.7317 -2.6708 2.1483 38 1 0.2394 -2.2680 1.2657 39 1 0.1233 -4.4570 -3.4924 40 1 -1.2181 -4.7327 -2.2971 41 1 -0.0390 -5.5637 0.0298 42 1 1.7528 -5.6068 -0.2783 43 1 1.5475 -6.6530 -3.8466 44 1 2.4636 -5.5542 -2.7867 45 1 3.3857 -7.8643 -2.7135 46 1 2.7408 -7.3720 -1.1287 47 1 1.9938 -9.6481 -1.6458 48 1 1.3219 -9.0976 -3.2010 49 1 0.3265 -10.8006 -2.3112 50 1 -0.8661 -7.4604 -2.9661 51 1 -1.2651 -7.0287 -1.2822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982069209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:13 Heat of formation + Delta-G solvation = 53.197765 kcal Electronic energy + Delta-G solvation = -32109.190180 eV Core-core repulsion = 28012.650228 eV Total energy + Delta-G solvation = -4096.539952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.95664 -41.94366 -39.92848 -37.69521 -36.63816 -34.81712 -34.51855 -33.12315 -32.31193 -31.07271 -29.75954 -28.51266 -27.42253 -27.28473 -27.01605 -25.57002 -23.98710 -23.12408 -22.10187 -21.15873 -20.19752 -19.30963 -19.20931 -18.73653 -18.09245 -17.76708 -16.96536 -16.73613 -16.22333 -15.87281 -15.80503 -15.38050 -15.23607 -14.92977 -14.89267 -14.66525 -14.35947 -14.18094 -13.97985 -13.91346 -13.89289 -13.72043 -13.55405 -13.31762 -13.28933 -13.14198 -12.86358 -12.80029 -12.69422 -12.52609 -12.36658 -11.94339 -11.86011 -11.84785 -11.72855 -11.58329 -11.30088 -11.00763 -10.90759 -10.72780 -10.36205 -10.11221 -9.70604 -8.82576 -8.14790 -5.30638 0.46139 1.13536 1.55204 1.65522 1.71979 1.85736 1.88562 2.19385 2.71762 3.13205 3.21084 3.32702 3.42217 3.50292 3.68952 3.75793 3.81532 3.88009 3.99825 4.11632 4.23989 4.31602 4.32165 4.37284 4.43020 4.50889 4.53536 4.60000 4.61241 4.62236 4.64362 4.67363 4.73678 4.78780 4.83389 4.87263 4.88361 4.92114 4.98924 5.05525 5.06649 5.09173 5.16424 5.25010 5.27257 5.29871 5.39625 5.54848 5.94145 6.48224 6.69007 7.09634 7.13907 7.29434 7.86419 8.31775 9.10210 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002652 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.218132 B =10556.287543 C =10733.661164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.037 3.963 3 N -0.403 5.403 4 O 0.083 5.917 5 C -0.020 4.020 6 C -0.076 4.076 7 C -0.198 4.198 8 C -0.018 4.018 9 H 0.128 0.872 10 C -0.142 4.142 11 C 0.537 3.463 12 O -0.577 6.577 13 N -0.633 5.633 14 C 0.118 3.882 15 C -0.098 4.098 16 C 0.129 3.871 17 C -0.076 4.076 18 C -0.122 4.122 19 C 0.153 3.847 20 N -0.610 5.610 21 C -0.343 4.343 22 H 0.057 0.943 23 C -0.077 4.077 24 N -0.948 5.948 25 Si 1.110 2.890 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.270 1.270 29 C 0.164 3.836 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.044 0.956 48 H -0.002 1.002 49 H 0.254 0.746 50 H 0.014 0.986 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 17.280 4.845 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 N -0.113 5.113 4 O 0.022 5.978 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.039 4.039 9 H 0.146 0.854 10 C -0.199 4.199 11 C 0.328 3.672 12 O -0.457 6.457 13 N -0.367 5.367 14 C -0.005 4.005 15 C -0.100 4.100 16 C 0.007 3.993 17 C -0.113 4.113 18 C -0.161 4.161 19 C 0.028 3.972 20 N -0.334 5.334 21 C -0.473 4.473 22 H 0.075 0.925 23 C -0.273 4.273 24 N -0.591 5.591 25 Si 0.936 3.064 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.195 1.195 29 C 0.038 3.962 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.064 0.936 50 H 0.032 0.968 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.703 17.847 5.271 19.780 hybrid contribution -0.877 0.448 -1.353 1.673 sum 5.826 18.295 3.918 19.596 Atomic orbital electron populations 1.20238 0.85658 1.03636 1.03515 1.23621 0.99550 0.88584 1.00445 1.73782 0.89865 1.24809 1.22847 1.84735 1.21268 1.23410 1.68381 1.24935 0.99312 0.83335 1.00759 1.20622 0.88361 0.99026 1.05289 1.20510 0.92099 0.96221 1.11386 1.19461 1.00299 0.90417 0.93773 0.85407 1.21843 0.99919 1.02909 0.95214 1.20509 0.79777 0.79869 0.87054 1.90689 1.60977 1.45555 1.48451 1.50088 1.52118 1.07896 1.26626 1.23206 0.96400 0.88137 0.92750 1.22397 0.97343 0.93771 0.96535 1.23239 1.03223 0.77640 0.95156 1.21051 0.94535 0.97532 0.98214 1.21820 0.97897 0.95515 1.00883 1.20703 0.86796 0.96064 0.93662 1.44300 1.21568 1.30116 1.37461 1.20193 1.33823 0.92398 1.00855 0.92509 1.27008 0.99954 0.94158 1.06171 1.70875 1.51564 1.38190 0.98442 0.82928 0.76374 0.74974 0.72142 1.21660 1.22285 1.19480 1.20850 0.92724 0.85883 0.96735 0.88703 0.91113 0.90575 0.88489 0.87813 0.87118 0.90451 0.89652 0.92409 0.90419 0.88754 0.88968 0.89000 0.92294 0.91281 0.91153 0.91934 0.93747 0.98411 0.93603 0.96834 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 8.93 71.24 0.64 -1.05 16 2 C 0.04 0.97 6.69 43.58 0.29 1.26 16 3 N -0.40 -11.61 12.07 -49.57 -0.60 -12.20 16 4 O 0.08 2.10 11.20 71.61 0.80 2.90 16 5 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 6 C -0.08 -0.76 10.17 71.24 0.72 -0.04 16 7 C -0.20 -4.51 4.47 -19.73 -0.09 -4.59 16 8 C -0.02 -0.35 2.85 -12.29 -0.04 -0.38 16 9 H 0.13 1.88 7.13 -2.39 -0.02 1.86 16 10 C -0.14 -2.27 8.98 71.98 0.65 -1.62 16 11 C 0.54 13.75 6.66 87.66 0.58 14.33 16 12 O -0.58 -19.19 14.69 -3.02 -0.04 -19.23 16 13 N -0.63 -15.01 3.41 -843.27 -2.88 -17.89 16 14 C 0.12 2.86 7.97 86.30 0.69 3.55 16 15 C -0.10 -2.64 0.87 -52.05 -0.05 -2.68 16 16 C 0.13 3.00 5.86 86.29 0.51 3.50 16 17 C -0.08 -2.04 5.02 30.53 0.15 -1.88 16 18 C -0.12 -3.80 5.99 30.55 0.18 -3.62 16 19 C 0.15 6.51 4.62 86.19 0.40 6.91 16 20 N -0.61 -26.89 2.86 -700.46 -2.00 -28.89 16 21 C -0.34 -17.24 9.50 84.03 0.80 -16.44 16 22 H 0.06 2.81 7.94 -2.91 -0.02 2.78 16 23 C -0.08 -4.07 4.69 84.86 0.40 -3.67 16 24 N -0.95 -55.10 12.38 21.65 0.27 -54.83 16 25 Si 1.11 47.63 29.99 68.60 2.06 49.69 16 26 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 29 C 0.16 5.75 5.71 86.19 0.49 6.24 16 30 H 0.09 1.73 8.12 -2.38 -0.02 1.71 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.92 5.79 -2.39 -0.01 1.90 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.71 7.39 -2.39 -0.02 0.69 16 36 H 0.08 1.18 6.12 -2.38 -0.01 1.17 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.00 6.76 -2.39 -0.02 0.98 16 39 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 40 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 41 H 0.09 2.13 7.79 -2.39 -0.02 2.11 16 42 H 0.09 1.97 7.36 -2.39 -0.02 1.96 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 1.91 7.36 -2.39 -0.02 1.89 16 47 H 0.04 2.20 6.23 -2.39 -0.01 2.18 16 48 H 0.00 -0.10 7.94 -2.39 -0.02 -0.11 16 49 H 0.25 15.07 6.77 -92.71 -0.63 14.45 16 50 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 51 H 0.06 2.08 7.78 -2.39 -0.02 2.07 16 Total: -1.00 -70.07 396.06 5.19 -64.87 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.07 Total: 16.00 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.52 Total: -0.41 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.21 Total: -113.81 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.76 Total: -16.34 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.06 Total: 49.69 kcal Total: -70.07 5.19 -64.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982069209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.072 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds